# STOCKHOLM 1.0 #=GF ID 4.10.60.10/FF/10722 #=GF DE Retrovirus-related Gag polyprotein #=GF AC 4.10.60.10/FF/10722 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 94.071 #=GS O01836/199-240 AC O01836 #=GS O01836/199-240 OS Caenorhabditis elegans #=GS O01836/199-240 DE ATP-dependent RNA helicase glh-3 #=GS O01836/199-240 DR GENE3D; 20d3b37e71b773888628e3573e54ee9b/199-240; #=GS O01836/199-240 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS O01836/199-240 DR GO; GO:0005515; GO:0008432; GO:0017151; GO:0043186; GO:0043621; #=GS O01836/199-240 DR EC; 3.6.4.13; #=GS Q7TQ39/469-521 AC Q7TQ39 #=GS Q7TQ39/469-521 OS Mus musculus #=GS Q7TQ39/469-521 DE Gag protein #=GS Q7TQ39/469-521 DR GENE3D; 2d5f548c4f1ba8db8b9cbc105ee0e365/469-521; #=GS Q7TQ39/469-521 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS A0A1D5T0K1/98-141 AC A0A1D5T0K1 #=GS A0A1D5T0K1/98-141 OS Triticum aestivum #=GS A0A1D5T0K1/98-141 DE Uncharacterized protein #=GS A0A1D5T0K1/98-141 DR GENE3D; 00bf62078374a5abea3db2067bacfaea/98-141; #=GS A0A1D5T0K1/98-141 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS I1I5V4/98-140 AC I1I5V4 #=GS I1I5V4/98-140 OS Brachypodium distachyon #=GS I1I5V4/98-140 DE Uncharacterized protein #=GS I1I5V4/98-140 DR GENE3D; 13469f0b4a8389a05011b11b1de380fe/98-140; #=GS I1I5V4/98-140 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS W4ZT77/98-141 AC W4ZT77 #=GS W4ZT77/98-141 OS Triticum aestivum #=GS W4ZT77/98-141 DE Uncharacterized protein #=GS W4ZT77/98-141 DR GENE3D; 143a2314de64a27a0966dbadb5a2cf47/98-141; #=GS W4ZT77/98-141 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS A0A1D5RTU7/8-52 AC A0A1D5RTU7 #=GS A0A1D5RTU7/8-52 OS Triticum aestivum #=GS A0A1D5RTU7/8-52 DE Uncharacterized protein #=GS A0A1D5RTU7/8-52 DR GENE3D; 1a09b34b81421e3761b2051dc5fb1eef/8-52; #=GS A0A1D5RTU7/8-52 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS A0A1D5SH53/81-123 AC A0A1D5SH53 #=GS A0A1D5SH53/81-123 OS Triticum aestivum #=GS A0A1D5SH53/81-123 DE Uncharacterized protein #=GS A0A1D5SH53/81-123 DR GENE3D; 27f17b712def0e7752aa8da0a2d88f4f/81-123; #=GS A0A1D5SH53/81-123 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS I1I5V5/29-71 AC I1I5V5 #=GS I1I5V5/29-71 OS Brachypodium distachyon #=GS I1I5V5/29-71 DE Uncharacterized protein #=GS I1I5V5/29-71 DR GENE3D; 2a99bc7c519b9151b62445bf1953f0cc/29-71; #=GS I1I5V5/29-71 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS A0A1D5RTU5/81-123 AC A0A1D5RTU5 #=GS A0A1D5RTU5/81-123 OS Triticum aestivum #=GS A0A1D5RTU5/81-123 DE Uncharacterized protein #=GS A0A1D5RTU5/81-123 DR GENE3D; 3549bfb8061fcc4dbe9c49091be0c44d/81-123; #=GS A0A1D5RTU5/81-123 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS A0A1D5SH54/8-52 AC A0A1D5SH54 #=GS A0A1D5SH54/8-52 OS Triticum aestivum #=GS A0A1D5SH54/8-52 DE Uncharacterized protein #=GS A0A1D5SH54/8-52 DR GENE3D; 3d154bfd9d47569e32db6b6bcd3d0a3e/8-52; #=GS A0A1D5SH54/8-52 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS W5A7K8/99-141 AC W5A7K8 #=GS W5A7K8/99-141 OS Triticum aestivum #=GS W5A7K8/99-141 DE Uncharacterized protein #=GS W5A7K8/99-141 DR GENE3D; 79dbe35176b7364488f3c62200f4cac7/99-141; #=GS W5A7K8/99-141 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS M8C3C3/151-194 AC M8C3C3 #=GS M8C3C3/151-194 OS Aegilops tauschii #=GS M8C3C3/151-194 DE Zinc finger protein GIS2 #=GS M8C3C3/151-194 DR GENE3D; 8ef0ac09917c206488ddab187af03076/151-194; #=GS M8C3C3/151-194 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; #=GS A0A1D5T0K2/81-123 AC A0A1D5T0K2 #=GS A0A1D5T0K2/81-123 OS Triticum aestivum #=GS A0A1D5T0K2/81-123 DE Uncharacterized protein #=GS A0A1D5T0K2/81-123 DR GENE3D; 94b4fbbad210b7cdb718a6163fcb79a1/81-123; #=GS A0A1D5T0K2/81-123 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS Q64033/483-534 AC Q64033 #=GS Q64033/483-534 OS Mus sp. #=GS Q64033/483-534 DE Antigen LEC-A #=GS Q64033/483-534 DR GENE3D; a5a04f372f86d7a1c2aa650ab5d2b642/483-534; #=GS Q64033/483-534 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus sp.; #=GS A0A0P6CDF7/106-158 AC A0A0P6CDF7 #=GS A0A0P6CDF7/106-158 OS Daphnia magna #=GS A0A0P6CDF7/106-158 DE HERV-K 6q14.1 provirus ancestral Gag-Pol polyprotein #=GS A0A0P6CDF7/106-158 DR GENE3D; a7b7200d92b034be8c268890be6f2393/106-158; #=GS A0A0P6CDF7/106-158 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS J7S724/2-40 AC J7S724 #=GS J7S724/2-40 OS Kazachstania naganishii CBS 8797 #=GS J7S724/2-40 DE Uncharacterized protein #=GS J7S724/2-40 DR GENE3D; a9d1d69975066e09d0a40f7afe6c6400/2-40; #=GS J7S724/2-40 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kazachstania; Kazachstania naganishii; #=GS Q60505/456-503 AC Q60505 #=GS Q60505/456-503 OS Cricetulus sp. #=GS Q60505/456-503 DE Chinese hamster provirus #=GS Q60505/456-503 DR GENE3D; ce657f9d33545c43e8f93ded64d50007/456-503; #=GS Q60505/456-503 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetulus; Cricetulus sp.; #=GS I1I5V6/97-139 AC I1I5V6 #=GS I1I5V6/97-139 OS Brachypodium distachyon #=GS I1I5V6/97-139 DE Uncharacterized protein #=GS I1I5V6/97-139 DR GENE3D; d58144f91ac53228491094b7e7708533/97-139; #=GS I1I5V6/97-139 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS F2DSG1/98-141 AC F2DSG1 #=GS F2DSG1/98-141 OS Hordeum vulgare subsp. vulgare #=GS F2DSG1/98-141 DE Predicted protein #=GS F2DSG1/98-141 DR GENE3D; de9f04d51dc5012d399fc9b30be57430/98-141; #=GS F2DSG1/98-141 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Hordeinae; Hordeum; Hordeum vulgare; Hordeum vulgare subsp. vulgare; #=GS M7YYQ9/585-627 AC M7YYQ9 #=GS M7YYQ9/585-627 OS Triticum urartu #=GS M7YYQ9/585-627 DE Zinc finger protein GIS2 #=GS M7YYQ9/585-627 DR GENE3D; f4f4ca9ed1e417b9666fa5b391d8e28e/585-627; #=GS M7YYQ9/585-627 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum urartu; #=GS P04023/439-472 AC P04023 #=GS P04023/439-472 OS Golden hamster intracisternal A-particle H18 #=GS P04023/439-472 DE Retrovirus-related Gag polyprotein #=GS P04023/439-472 DR GENE3D; c5f403733946d95a02551ab424d8331b/439-472; #=GS P04023/439-472 DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Golden hamster intracisternal A-particle H18; #=GS A0A0E9DC36/170-221 AC A0A0E9DC36 #=GS A0A0E9DC36/170-221 OS Chlamydia trachomatis #=GS A0A0E9DC36/170-221 DE Gag gene protein p24 (Core nucleocapsid protein) #=GS A0A0E9DC36/170-221 DR GENE3D; d676330ee71378f53ecdbff64ba81fc5/170-221; #=GS A0A0E9DC36/170-221 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; #=GS P11365/451-502 AC P11365 #=GS P11365/451-502 OS Mouse intracisternal A-particle MIA14 #=GS P11365/451-502 DE Retrovirus-related Gag polyprotein #=GS P11365/451-502 DR GENE3D; fa0fd9cff711695a04a62be6ba9987e5/451-502; #=GS P11365/451-502 DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Mouse Intracisternal A-particle; #=GF TC 103.0 1.3E-33 #=GF SQ 23 O01836/199-240 -----GISNTCFNCKKYGHRATECSAPQ------RECANCGDPNHRANECASW Q7TQ39/469-521 RSMGRNDQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCRSV A0A1D5T0K1/98-141 --------GICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- I1I5V4/98-140 ---------ICRNCGKSGHIAKDCSAPPMLPGEVKLCNNCYKPGHIAVECTN- W4ZT77/98-141 --------GICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- A0A1D5RTU7/8-52 -------EGICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- A0A1D5SH53/81-123 ---------ICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- I1I5V5/29-71 ---------ICRNCGKSGHIAKDCSAPPMLPGEVKLCNNCYKPGHIAVECTN- A0A1D5RTU5/81-123 ---------ICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- A0A1D5SH54/8-52 -------EGICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- W5A7K8/99-141 ---------ICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- M8C3C3/151-194 --------GICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- A0A1D5T0K2/81-123 ---------ICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- Q64033/483-534 -SMSRNDQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCRSV A0A0P6CDF7/106-158 RSMGRNNQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCRSV J7S724/2-40 ------SSKACFVCGKIGHLAEECDSD-------KLCYNCGQPGHVQSECTL- Q60505/456-503 ----RRNTSACFNCGKTRHLKKDCRVPERI-REVELCRRCGKGYHRASECKSV I1I5V6/97-139 ---------ICRNCGKSGHIAKDCSAPPMLPGEVKLCNNCYKPGHIAVECTN- F2DSG1/98-141 --------GICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- M7YYQ9/585-627 ---------ICRNCGKSGHIAKDCTAPPMLPGEVKLCNNCYKPGHIAVECTN- P04023/439-472 RYRDLSNRKACFNCGRMGHLKKDCQAPERT-RESK------------------ A0A0E9DC36/170-221 -SMSRNDQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCRSV P11365/451-502 -SMSRNDQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCRSV #=GC scorecons 00001111259489884894578947833325445674573643736357440 #=GC scorecons_70 __________*_****_**__***_**________**__*____*_*__*___ #=GC scorecons_80 __________*_****_**__***_**_________*__*____*____*___ #=GC scorecons_90 __________*__*_*_**____*_____________________________ //