# STOCKHOLM 1.0 #=GF ID 4.10.60.10/FF/10684 #=GF DE Cellular nucleic acid-binding protein #=GF AC 4.10.60.10/FF/10684 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 86.168 #=GS P27973/394-437 AC P27973 #=GS P27973/394-437 OS Simian immunodeficiency virus (AGM155 ISOLATE) #=GS P27973/394-437 DE Gag-Pol polyprotein #=GS P27973/394-437 DR GENE3D; 717b575c898555fffdf7c6fd7d24f897/394-437; #=GS P27973/394-437 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS P27973/394-437 DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; #=GS P05895/401-442 AC P05895 #=GS P05895/401-442 OS Simian immunodeficiency virus (TYO-1 ISOLATE) #=GS P05895/401-442 DE Gag-Pol polyprotein #=GS P05895/401-442 DR GENE3D; e14a3e7381e7f17baf7d399f22cfe58b/401-442; #=GS P05895/401-442 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS P05895/401-442 DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; #=GS P27980/401-442 AC P27980 #=GS P27980/401-442 OS Simian immunodeficiency virus (AGM3 ISOLATE) #=GS P27980/401-442 DE Gag-Pol polyprotein #=GS P27980/401-442 DR GENE3D; ed8916fd166220fb9a5537b30f208926/401-442; #=GS P27980/401-442 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS P27980/401-442 DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; #=GS Q02836/390-432 AC Q02836 #=GS Q02836/390-432 OS Simian immunodeficiency virus (isolate AGM / clone GRI-1) #=GS Q02836/390-432 DE Gag-Pol polyprotein #=GS Q02836/390-432 DR GENE3D; f21e5c22b6856377c72c4854a8567355/390-432; #=GS Q02836/390-432 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q02836/390-432 DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; #=GS H2M789/124-163 AC H2M789 #=GS H2M789/124-163 OS Oryzias latipes #=GS H2M789/124-163 DE Uncharacterized protein #=GS H2M789/124-163 DR GENE3D; 03088155c1793426e3b317f48b33632d/124-163; #=GS H2M789/124-163 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Atherinomorphae; Beloniformes; Adrianichthyoidei; Adrianichthyidae; Oryziinae; Oryzias; Oryzias latipes; #=GS H2M791/122-161 AC H2M791 #=GS H2M791/122-161 OS Oryzias latipes #=GS H2M791/122-161 DE Uncharacterized protein #=GS H2M791/122-161 DR GENE3D; 03b1d64f1363689dad4a3bb24520543d/122-161; #=GS H2M791/122-161 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Atherinomorphae; Beloniformes; Adrianichthyoidei; Adrianichthyidae; Oryziinae; Oryzias; Oryzias latipes; #=GS W5KDA1/119-158 AC W5KDA1 #=GS W5KDA1/119-158 OS Astyanax mexicanus #=GS W5KDA1/119-158 DE Uncharacterized protein #=GS W5KDA1/119-158 DR GENE3D; 2f5ce438ee0ff2f472adc89d2388d5ef/119-158; #=GS W5KDA1/119-158 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Characiphysae; Characiformes; Characoidei; Characidae; Astyanax; Astyanax mexicanus; #=GS Q4RJS7/125-164 AC Q4RJS7 #=GS Q4RJS7/125-164 OS Tetraodon nigroviridis #=GS Q4RJS7/125-164 DE Chromosome 9 SCAF15033, whole genome shotgun sequence #=GS Q4RJS7/125-164 DR GENE3D; 323b13b6359e039ecddaa439063bd481/125-164; #=GS Q4RJS7/125-164 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Tetraodontiformes; Tetraodontoidei; Tetradontoidea; Tetraodontidae; Tetraodon; Tetraodon nigroviridis; #=GS A0A060Z6Z3/45-84 AC A0A060Z6Z3 #=GS A0A060Z6Z3/45-84 OS Oncorhynchus mykiss #=GS A0A060Z6Z3/45-84 DE Uncharacterized protein #=GS A0A060Z6Z3/45-84 DR GENE3D; 3c9f2c7ffbcb5534895575f53c398212/45-84; #=GS A0A060Z6Z3/45-84 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus; Oncorhynchus mykiss; #=GS G1U0R9/128-168 AC G1U0R9 #=GS G1U0R9/128-168 OS Oryctolagus cuniculus #=GS G1U0R9/128-168 DE Uncharacterized protein #=GS G1U0R9/128-168 DR GENE3D; 491d1b12f84f33976d322d5213a8e5cb/128-168; #=GS G1U0R9/128-168 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Lagomorpha; Leporidae; Oryctolagus; Oryctolagus cuniculus; #=GS H2SZR4/134-173 AC H2SZR4 #=GS H2SZR4/134-173 OS Takifugu rubripes #=GS H2SZR4/134-173 DE Uncharacterized protein #=GS H2SZR4/134-173 DR GENE3D; 54e62e7153fe6c176765f03683ee64a9/134-173; #=GS H2SZR4/134-173 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Tetraodontiformes; Tetraodontoidei; Tetradontoidea; Tetraodontidae; Takifugu; Takifugu rubripes; #=GS E7FCQ0/119-158 AC E7FCQ0 #=GS E7FCQ0/119-158 OS Danio rerio #=GS E7FCQ0/119-158 DE CCHC-type zinc finger, nucleic acid-binding protein b #=GS E7FCQ0/119-158 DR GENE3D; 68f13b82e944b0cd0371f876bbda0e22/119-158; #=GS E7FCQ0/119-158 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Cypriniphysae; Cypriniformes; Cyprinoidea; Cyprinidae; Danio; Danio rerio; #=GS C3KHR0/128-167 AC C3KHR0 #=GS C3KHR0/128-167 OS Anoplopoma fimbria #=GS C3KHR0/128-167 DE Cellular nucleic acid-binding protein #=GS C3KHR0/128-167 DR GENE3D; 7da46bc35b9820e29db7efb8f74735dd/128-167; #=GS C3KHR0/128-167 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma; Anoplopoma fimbria; #=GS A0A1A6H0Q0/154-193 AC A0A1A6H0Q0 #=GS A0A1A6H0Q0/154-193 OS Neotoma lepida #=GS A0A1A6H0Q0/154-193 DE Uncharacterized protein #=GS A0A1A6H0Q0/154-193 DR GENE3D; 944ef4331354beb8c3a500e1e241283c/154-193; #=GS A0A1A6H0Q0/154-193 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Neotominae; Neotoma; Neotoma lepida; #=GS G3N461/128-168 AC G3N461 #=GS G3N461/128-168 OS Gasterosteus aculeatus #=GS G3N461/128-168 DE Uncharacterized protein #=GS G3N461/128-168 DR GENE3D; b1d822b9d7fec899658e291aeabe314f/128-168; #=GS G3N461/128-168 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus; Gasterosteus aculeatus; #=GS I3IUQ3/133-172 AC I3IUQ3 #=GS I3IUQ3/133-172 OS Oreochromis niloticus #=GS I3IUQ3/133-172 DE Uncharacterized protein #=GS I3IUQ3/133-172 DR GENE3D; c25488bf180484e2e017669f87348d99/133-172; #=GS I3IUQ3/133-172 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Cichlomorphae; Cichliformes; Cichlidae; Pseudocrenilabrinae; Oreochromini; Oreochromis; Oreochromis niloticus; #=GS G3MZ41/133-172 AC G3MZ41 #=GS G3MZ41/133-172 OS Bos taurus #=GS G3MZ41/133-172 DE Uncharacterized protein #=GS G3MZ41/133-172 DR GENE3D; c34ebdb9bda634500040a1ff67f3e0ad/133-172; #=GS G3MZ41/133-172 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; #=GS M4ATD1/124-163 AC M4ATD1 #=GS M4ATD1/124-163 OS Xiphophorus maculatus #=GS M4ATD1/124-163 DE Uncharacterized protein #=GS M4ATD1/124-163 DR GENE3D; db7de31aa5a7ad2b1db2496a4bf75e4b/124-163; #=GS M4ATD1/124-163 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Atherinomorphae; Cyprinodontiformes; Cyprinodontoidei; Poeciliidae; Poeciliinae; Xiphophorus; Xiphophorus maculatus; #=GS A0A0S7LJM9/124-163 AC A0A0S7LJM9 #=GS A0A0S7LJM9/124-163 OS Poeciliopsis prolifica #=GS A0A0S7LJM9/124-163 DE CNBP #=GS A0A0S7LJM9/124-163 DR GENE3D; db7de31aa5a7ad2b1db2496a4bf75e4b/124-163; #=GS A0A0S7LJM9/124-163 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Atherinomorphae; Cyprinodontiformes; Cyprinodontoidei; Poeciliidae; Poeciliinae; Poeciliopsis; Poeciliopsis prolifica; #=GS A0A087YDB1/124-163 AC A0A087YDB1 #=GS A0A087YDB1/124-163 OS Poecilia formosa #=GS A0A087YDB1/124-163 DE Uncharacterized protein #=GS A0A087YDB1/124-163 DR GENE3D; db7de31aa5a7ad2b1db2496a4bf75e4b/124-163; #=GS A0A087YDB1/124-163 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Atherinomorphae; Cyprinodontiformes; Cyprinodontoidei; Poeciliidae; Poeciliinae; Poecilia; Poecilia formosa; #=GS A0A146W641/124-163 AC A0A146W641 #=GS A0A146W641/124-163 OS Fundulus heteroclitus #=GS A0A146W641/124-163 DE Cellular nucleic acid-binding protein #=GS A0A146W641/124-163 DR GENE3D; db7de31aa5a7ad2b1db2496a4bf75e4b/124-163; #=GS A0A146W641/124-163 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Atherinomorphae; Cyprinodontiformes; Cyprinodontoidei; Fundulidae; Fundulus; Fundulus heteroclitus; #=GS P27978/401-442 AC P27978 #=GS P27978/401-442 OS Simian immunodeficiency virus (AGM3 ISOLATE) #=GS P27978/401-442 DE Gag polyprotein #=GS P27978/401-442 DR GENE3D; 1c46c518696db58901dfb5b179f7ba96/401-442; #=GS P27978/401-442 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS A0A159D7Y2/400-442 AC A0A159D7Y2 #=GS A0A159D7Y2/400-442 OS Simian immunodeficiency virus #=GS A0A159D7Y2/400-442 DE Gag polyprotein #=GS A0A159D7Y2/400-442 DR GENE3D; 24cbb3fe6af8bc6c9bb69d0084c3b690/400-442; #=GS A0A159D7Y2/400-442 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS A0A161CZT2/398-443 AC A0A161CZT2 #=GS A0A161CZT2/398-443 OS Simian immunodeficiency virus #=GS A0A161CZT2/398-443 DE Gag polyprotein #=GS A0A161CZT2/398-443 DR GENE3D; 5e719e8fa150c0e15290e942173a8c2b/398-443; #=GS A0A161CZT2/398-443 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS A0A1B4WRK1/395-438 AC A0A1B4WRK1 #=GS A0A1B4WRK1/395-438 OS Simian immunodeficiency virus - agm #=GS A0A1B4WRK1/395-438 DE Gag polyprotein #=GS A0A1B4WRK1/395-438 DR GENE3D; 6f187048fded2780cb7e4b180eceea17/395-438; #=GS A0A1B4WRK1/395-438 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q88098/394-439 AC Q88098 #=GS Q88098/394-439 OS Simian immunodeficiency virus #=GS Q88098/394-439 DE Gag polyprotein #=GS Q88098/394-439 DR GENE3D; c20c799d746ada4c21d9c17598ae4cf7/394-439; #=GS Q88098/394-439 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS A0A159D7Z7/396-441 AC A0A159D7Z7 #=GS A0A159D7Z7/396-441 OS Simian immunodeficiency virus #=GS A0A159D7Z7/396-441 DE Gag polyprotein #=GS A0A159D7Z7/396-441 DR GENE3D; c9eb75cab2414a7b3175f9a633ff47de/396-441; #=GS A0A159D7Z7/396-441 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS A0A159D7K5/395-439 AC A0A159D7K5 #=GS A0A159D7K5/395-439 OS Simian immunodeficiency virus #=GS A0A159D7K5/395-439 DE Gag polyprotein #=GS A0A159D7K5/395-439 DR GENE3D; d5f36357241936db6998b3b9f768a729/395-439; #=GS A0A159D7K5/395-439 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q8JAI1/393-436 AC Q8JAI1 #=GS Q8JAI1/393-436 OS Simian immunodeficiency virus #=GS Q8JAI1/393-436 DE Gag polyprotein #=GS Q8JAI1/393-436 DR GENE3D; e5318b563de55b47d423a273e5908ab2/393-436; #=GS Q8JAI1/393-436 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS P27972/394-437 AC P27972 #=GS P27972/394-437 OS Simian immunodeficiency virus (AGM155 ISOLATE) #=GS P27972/394-437 DE Gag polyprotein #=GS P27972/394-437 DR GENE3D; f3d112be08990009f9327230f77f637e/394-437; #=GS P27972/394-437 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q6LDM5/390-432 AC Q6LDM5 #=GS Q6LDM5/390-432 OS Simian immunodeficiency virus #=GS Q6LDM5/390-432 DE Gag polyprotein #=GS Q6LDM5/390-432 DR GENE3D; fdc7c967627d09903c08ad045c102142/390-432; #=GS Q6LDM5/390-432 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q02843/390-432 AC Q02843 #=GS Q02843/390-432 OS Simian immunodeficiency virus (isolate AGM / clone GRI-1) #=GS Q02843/390-432 DE Gag polyprotein #=GS Q02843/390-432 DR GENE3D; fdc7c967627d09903c08ad045c102142/390-432; #=GS Q02843/390-432 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GF TC 81.2 3.9E-26 #=GF SQ 32 P27973/394-437 --PRPPPKCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDCR-GQ-- P05895/401-442 -----PVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCR-GQV- P27980/401-442 -----PVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCR-GQV- Q02836/390-432 ------LKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQAN H2M789/124-163 ------VKCYRCGEIGHVAVHCSKASETNCYNCGKAGHLAKECT-IE-- H2M791/122-161 ------VKCYRCGEIGHVAVHCSKASETNCYNCGKAGHLAKECT-IE-- W5KDA1/119-158 ------VKCYRCGEIGHVAVQCSKASEVNCYNCGKSGHLAKECT-IE-- Q4RJS7/125-164 ------VKCYRCGGIGHVALQCSKASETTCYNCGKAGHVAKDCT-IE-- A0A060Z6Z3/45-84 ------VKCYRCGEIGHVAVQCSKASEVNCYNCGKSGHLAKECT-IE-- G1U0R9/128-168 ------VKCYRCGETGHVAINCKKAKQVNCYRCGEFGHLARECD-NEM- H2SZR4/134-173 ------VKCYRCGEIGHVAVQCSKASETNCYNCGKAGHVARDCT-IE-- E7FCQ0/119-158 ------VKCYRCGEIGHVAVQCSKASEVNCYNCGKSGHVAKECT-IE-- C3KHR0/128-167 ------VKCYRCGDIGHVAVHCAKTSETNCYNCGTAGHLARDCT-NE-- A0A1A6H0Q0/154-193 ------IKCYRCGENGHMAVNCSKASEISCYRCGESGHLARECT-IE-- G3N461/128-168 ------VKCYRCGDIGHVALHCAKTSETNCYNCGNAGHLAKDCT-NEG- I3IUQ3/133-172 ------VKCYRCGEIGHVAVHCSKASELNCYNYGKSGHLAKECT-IE-- G3MZ41/133-172 ------VKCYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECP-IE-- M4ATD1/124-163 ------VKCYRCGEIGHVAVHCSKASETNCYNCGKAGHLAKECT-IE-- A0A0S7LJM9/124-163 ------VKCYRCGEIGHVAVHCSKASETNCYNCGKAGHLAKECT-IE-- A0A087YDB1/124-163 ------VKCYRCGEIGHVAVHCSKASETNCYNCGKAGHLAKECT-IE-- A0A146W641/124-163 ------VKCYRCGEIGHVAVHCSKASETNCYNCGKAGHLAKECT-IE-- P27978/401-442 -----PVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCR-GQV- A0A159D7Y2/400-442 ----KPIRCFNCGKFGHIQKNCTEPRKLRCLKCGKPGHMAKDCR-GQV- A0A161CZT2/398-443 -GPKGPPKCFNCGKFGHMQRNCPEPRKSKCFKCGKAGHMAKDCR-GQV- A0A1B4WRK1/395-438 ---RGNPRCFNCGKFGHLQRNCAEPRKMKCFKCGKIGHMAKDCK-GQV- Q88098/394-439 RRQRPPLKCYNCGKFGHMQRQCTEPRKIKCLKCGKLGHLAKDCR-GQ-- A0A159D7Z7/396-441 -PPRPSAKCFNCGRFGHLQRNCPEPRKIKCLKCGKPGHMAKDCR-GQV- A0A159D7K5/395-439 -RGRNPPRCYNCGKFGHLQRQCPEPRKMKCLKCGKPGHLAKDCR-GQ-- Q8JAI1/393-436 --QGKTPKCYNCGKFGHIARDCPKPKERKCFKCGKAGHLARQCKTG--- P27972/394-437 --PRPPPKCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDCR-GQ-- Q6LDM5/390-432 ------LKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQAN Q02843/390-432 ------LKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQAN #=GC scorecons 0000015897599559955459455554595589749968769404600 #=GC scorecons_70 _______***_**__**____*_______*__***_*******______ #=GC scorecons_80 _______***_**__**____*_______*__***_**_**_*______ #=GC scorecons_90 _______**__**__**____*_______*__**__**_*__*______ //