# STOCKHOLM 1.0 #=GF ID 4.10.60.10/FF/10570 #=GF DE Gag polyprotein #=GF AC 4.10.60.10/FF/10570 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 49.739 #=GS P03363/349-408 AC P03363 #=GS P03363/349-408 OS Human T-lymphotropic virus 2 #=GS P03363/349-408 DE Gag-Pro-Pol polyprotein #=GS P03363/349-408 DR GENE3D; dd7420c7ae2a459672164cf5b55516a4/349-408; #=GS P03363/349-408 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 2; #=GS P03363/349-408 DR GO; GO:0005515; #=GS P03363/349-408 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P14078/343-399 AC P14078 #=GS P14078/343-399 OS Human T-cell lymphotrophic virus type 1 (Caribbean isolate) #=GS P14078/343-399 DE Gag-Pro-Pol polyprotein #=GS P14078/343-399 DR GENE3D; 094456b764f7d51f65afd6baae8dc0ee/343-399; #=GS P14078/343-399 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P14078/343-399 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q0R5R2/335-398 AC Q0R5R2 #=GS Q0R5R2/335-398 OS HTLV-3 strain 2026ND #=GS Q0R5R2/335-398 DE Gag-Pro-Pol polyprotein #=GS Q0R5R2/335-398 DR GENE3D; 5a1d5796697a4fab0b2d8e53531b065b/335-398; #=GS Q0R5R2/335-398 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; #=GS Q0R5R2/335-398 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P0C211/343-399 AC P0C211 #=GS P0C211/343-399 OS HTLV-1 isolate Mel 15 #=GS P0C211/343-399 DE Gag-Pro-Pol polyprotein #=GS P0C211/343-399 DR GENE3D; d2a6179b80f6e80858f6f4a29cec4036/343-399; #=GS P0C211/343-399 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P0C211/343-399 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P03362/343-399 AC P03362 #=GS P03362/343-399 OS Human T-cell lymphotrophic virus type 1 (strain ATK) #=GS P03362/343-399 DE Gag-Pro-Pol polyprotein #=GS P03362/343-399 DR GENE3D; e99dc1518b9af5c01c1243a5b3f3b4bc/343-399; #=GS P03362/343-399 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P03362/343-399 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q4U0X6/335-397 AC Q4U0X6 #=GS Q4U0X6/335-397 OS Human T-cell leukemia virus 3 (strain Pyl43) #=GS Q4U0X6/335-397 DE Gag-Pro-Pol polyprotein #=GS Q4U0X6/335-397 DR GENE3D; f9e70d43da42afe06aed9091ce37a79a/335-397; #=GS Q4U0X6/335-397 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; #=GS Q4U0X6/335-397 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q4QY53/353-411 AC Q4QY53 #=GS Q4QY53/353-411 OS Simian T-lymphotropic virus 1 #=GS Q4QY53/353-411 DE Gag polyprotein #=GS Q4QY53/353-411 DR GENE3D; 107c40952ed8171d132d1ff940b8eb60/353-411; #=GS Q4QY53/353-411 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P03353/348-408 AC P03353 #=GS P03353/348-408 OS Human T-lymphotropic virus 2 #=GS P03353/348-408 DE Gag-Pro polyprotein #=GS P03353/348-408 DR GENE3D; 123be7ea7038000fa2d33c72b09622fd/348-408; #=GS P03353/348-408 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 2; #=GS D5I144/334-394 AC D5I144 #=GS D5I144/334-394 OS Human T-lymphotropic virus 3 #=GS D5I144/334-394 DE Gag polyprotein #=GS D5I144/334-394 DR GENE3D; 17d421c0052e0450f04d7007a767e9fd/334-394; #=GS D5I144/334-394 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; #=GS D1MN99/334-394 AC D1MN99 #=GS D1MN99/334-394 OS Simian T-cell lymphotropic virus 6 #=GS D1MN99/334-394 DE Gag polyprotein #=GS D1MN99/334-394 DR GENE3D; 17d421c0052e0450f04d7007a767e9fd/334-394; #=GS D1MN99/334-394 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Simian T-cell lymphotropic virus 6; #=GS P14077/345-396 AC P14077 #=GS P14077/345-396 OS Human T-cell lymphotrophic virus type 1 (isolate MT-2) #=GS P14077/345-396 DE Gag polyprotein #=GS P14077/345-396 DR GENE3D; 45570a9af3392934846b56a42d3b2c58/345-396; #=GS P14077/345-396 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS X5GZ27/265-315 AC X5GZ27 #=GS X5GZ27/265-315 OS Human T-lymphotropic virus 1 #=GS X5GZ27/265-315 DE Gag polyprotein #=GS X5GZ27/265-315 DR GENE3D; 55c2db5ade7865062d29bcd893412d0b/265-315; #=GS X5GZ27/265-315 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P14076/345-396 AC P14076 #=GS P14076/345-396 OS Human T-cell lymphotrophic virus type 1 (Caribbean isolate) #=GS P14076/345-396 DE Gag polyprotein #=GS P14076/345-396 DR GENE3D; 56b0b4b77e2de117c92c05d2c4183ae7/345-396; #=GS P14076/345-396 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P03346/348-408 AC P03346 #=GS P03346/348-408 OS Human T-lymphotropic virus 2 #=GS P03346/348-408 DE Gag polyprotein #=GS P03346/348-408 DR GENE3D; 7c3ddfedb8b8b191078055f54413dd8e/348-408; #=GS P03346/348-408 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 2; #=GS P10274/347-396 AC P10274 #=GS P10274/347-396 OS Human T-cell lymphotrophic virus type 1 (strain ATK) #=GS P10274/347-396 DE Gag-Pro polyprotein #=GS P10274/347-396 DR GENE3D; 7ef69d61ce344a46ffedf337b5745523/347-396; #=GS P10274/347-396 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P0C210/343-399 AC P0C210 #=GS P0C210/343-399 OS HTLV-1 isolate Mel 15 #=GS P0C210/343-399 DE Gag-Pro polyprotein #=GS P0C210/343-399 DR GENE3D; 801a555b2b9c479ed2b1a93fe85469e3/343-399; #=GS P0C210/343-399 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS Q0R5R3/335-398 AC Q0R5R3 #=GS Q0R5R3/335-398 OS HTLV-3 strain 2026ND #=GS Q0R5R3/335-398 DE Gag-Pro polyprotein #=GS Q0R5R3/335-398 DR GENE3D; 8815e4e1a12ffff23e1418ac0a25e89c/335-398; #=GS Q0R5R3/335-398 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; #=GS Q09SZ9/335-397 AC Q09SZ9 #=GS Q09SZ9/335-397 OS Human T-cell leukemia virus 3 (strain Pyl43) #=GS Q09SZ9/335-397 DE Gag-Pro polyprotein #=GS Q09SZ9/335-397 DR GENE3D; 94f72e51663baad540489b063abb2c98/335-397; #=GS Q09SZ9/335-397 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; #=GS Q0R5R4/335-398 AC Q0R5R4 #=GS Q0R5R4/335-398 OS HTLV-3 strain 2026ND #=GS Q0R5R4/335-398 DE Gag polyprotein #=GS Q0R5R4/335-398 DR GENE3D; 97cdda13c3b4605f73d2ef436a7f8a8c/335-398; #=GS Q0R5R4/335-398 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; #=GS P03345/345-396 AC P03345 #=GS P03345/345-396 OS Human T-cell lymphotrophic virus type 1 (strain ATK) #=GS P03345/345-396 DE Gag polyprotein #=GS P03345/345-396 DR GENE3D; b8876885ae8bef5a457cfb3b62e32ce2/345-396; #=GS P03345/345-396 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS O70641/352-401 AC O70641 #=GS O70641/352-401 OS Simian T-lymphotropic virus 2 #=GS O70641/352-401 DE Gag-pro-pol polyprotein #=GS O70641/352-401 DR GENE3D; b90bfad8c07d1507a61c21367ae4d2c2/352-401; #=GS O70641/352-401 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 2; #=GS P14074/347-396 AC P14074 #=GS P14074/347-396 OS Human T-cell lymphotrophic virus type 1 (Caribbean isolate) #=GS P14074/347-396 DE Gag-Pro polyprotein #=GS P14074/347-396 DR GENE3D; c917f0e784626ae51e5fc6f60450c8d2/347-396; #=GS P14074/347-396 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS Q09T00/335-397 AC Q09T00 #=GS Q09T00/335-397 OS Human T-cell leukemia virus 3 (strain Pyl43) #=GS Q09T00/335-397 DE Gag polyprotein #=GS Q09T00/335-397 DR GENE3D; e35904f491aa8bd784f9e91517c5a045/335-397; #=GS Q09T00/335-397 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; #=GF TC 108.4 2.3E-34 #=GF SQ 23 P03363/349-408 --VLVVQPRR-PPPTQPCFRCGKVGHWSRDCTQPRPPPGPCPLCQDPSHWKRDCPQLKPPQEE-- P14078/343-399 --VLVVQPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRLKPT----- Q0R5R2/335-398 -KILMVQPKKTPPPNQPCFRCGQVGHWSRDCKQPRPPPGPCPVCQDPTHWKRDCPQLKTDTRDSE P0C211/343-399 --VLVVQPKK-PPPNQPCFRCGKAGHWSRDCAQPRPPPGPCPLCQDPTHWKRDCPRLKPA----- P03362/343-399 --VLVVQPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRLKPT----- Q4U0X6/335-397 -KILMIQPKKTPPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPAHWKQDCPQLKADTKGS- Q4QY53/353-411 --VLVVQPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRLKPATA--- P03353/348-408 -KVLVVQPRR-PPPTQPCFRCGKVGHWSRDCTQPRPPPGPCPLCQDPSHWKRDCPQLKPPQEE-- D5I144/334-394 NKVLMVQPKKTPPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPTHWKRDCPQLKPDP---- D1MN99/334-394 NKVLMVQPKKTPPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPTHWKRDCPQLKPDP---- P14077/345-396 ----VVQPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRL-------- X5GZ27/265-315 -----VQPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRL-------- P14076/345-396 ----VVQPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRL-------- P03346/348-408 -KVLVVQPRR-PPPTQPCFRCGKVGHWSRDCTQPRPPPGPCPLCQDPSHWKRDCPQLKPPQEE-- P10274/347-396 ------QPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRL-------- P0C210/343-399 --VLVVQPKK-PPPNQPCFRCGKAGHWSRDCAQPRPPPGPCPLCQDPTHWKRDCPRLKPA----- Q0R5R3/335-398 -KILMVQPKKTPPPNQPCFRCGQVGHWSRDCKQPRPPPGPCPVCQDPTHWKRDCPQLKTDTRDSE Q09SZ9/335-397 -KILMIQPKKTPPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPAHWKQDCPQLKADTKGS- Q0R5R4/335-398 -KILMVQPKKTPPPNQPCFRCGQVGHWSRDCKQPRPPPGPCPVCQDPTHWKRDCPQLKTDTRDSE P03345/345-396 ----VVQPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRL-------- O70641/352-401 ------QPRK-PPPTQPCFRCGKTGHWSRDCTLPRPPPGPCPLCKDPSHWKRDCPQF-------- P14074/347-396 ------QPKK-PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRL-------- Q09T00/335-397 -KILMIQPKKTPPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPAHWKQDCPQLKADTKGS- #=GC scorecons 01344599781999799999996699999995899999999979899699979996842210000 #=GC scorecons_70 ______****_************_*******_***************_*********________ #=GC scorecons_80 ______****_***********__*******_***************_*******_*________ #=GC scorecons_90 ______**_*_***_*******__*******_**********_****_***_***_*________ //