# STOCKHOLM 1.0
#=GF ID 4.10.60.10/FF/1046
#=GF DE Gag-pol fusion polyprotein
#=GF AC 4.10.60.10/FF/1046
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 45.956
#=GS Q77373/394-434      AC Q77373
#=GS Q77373/394-434      OS HIV-1 O_ANT70
#=GS Q77373/394-434      DE Gag-Pol polyprotein
#=GS Q77373/394-434      DR GENE3D; 2abc24da9de1f0dc361a26741be9766e/394-434; 
#=GS Q77373/394-434      DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS Q77373/394-434      DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; 
#=GS Q79666/394-434      AC Q79666
#=GS Q79666/394-434      OS HIV-1 O_MVP5180
#=GS Q79666/394-434      DE Gag-Pol polyprotein
#=GS Q79666/394-434      DR GENE3D; 5abf96a232b9ba7c6001613d44b6122b/394-434; 
#=GS Q79666/394-434      DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS Q79666/394-434      DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; 
#=GS Q77372/394-434      AC Q77372
#=GS Q77372/394-434      OS HIV-1 O_ANT70
#=GS Q77372/394-434      DE Gag polyprotein
#=GS Q77372/394-434      DR GENE3D; 1ade10dda2ff18bbdabf64db9e6a37fa/394-434; 
#=GS Q77372/394-434      DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS Q6Y930/394-434      AC Q6Y930
#=GS Q6Y930/394-434      OS Human immunodeficiency virus 1
#=GS Q6Y930/394-434      DE Gag polyprotein
#=GS Q6Y930/394-434      DR GENE3D; 22658eb12b28212298c80ad006ff0ad4/394-434; 
#=GS Q6Y930/394-434      DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS A0A0D4CHT9/394-434  AC A0A0D4CHT9
#=GS A0A0D4CHT9/394-434  OS Simian immunodeficiency virus
#=GS A0A0D4CHT9/394-434  DE Gag polyprotein
#=GS A0A0D4CHT9/394-434  DR GENE3D; 2f772120ed98c9425e86cb839ce3392f/394-434; 
#=GS A0A0D4CHT9/394-434  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; 
#=GS Q6Y912/389-431      AC Q6Y912
#=GS Q6Y912/389-431      OS Human immunodeficiency virus 1
#=GS Q6Y912/389-431      DE Gag polyprotein
#=GS Q6Y912/389-431      DR GENE3D; 3d432f331cc80a7df67e93401ae06cdb/389-431; 
#=GS Q6Y912/389-431      DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS A0A068F0U0/393-433  AC A0A068F0U0
#=GS A0A068F0U0/393-433  OS Human immunodeficiency virus 1
#=GS A0A068F0U0/393-433  DE Gag polyprotein
#=GS A0A068F0U0/393-433  DR GENE3D; 3e502aab9abde89303da594684d4a44c/393-433; 
#=GS A0A068F0U0/393-433  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS B9V2S4/384-428      AC B9V2S4
#=GS B9V2S4/384-428      OS Simian immunodeficiency virus
#=GS B9V2S4/384-428      DE Gag polyprotein
#=GS B9V2S4/384-428      DR GENE3D; 5257a4efe2ad87299e85b6774644ed20/384-428; 
#=GS B9V2S4/384-428      DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; 
#=GS A0A0U4DM25/388-435  AC A0A0U4DM25
#=GS A0A0U4DM25/388-435  OS Human immunodeficiency virus 1
#=GS A0A0U4DM25/388-435  DE Gag polyprotein
#=GS A0A0U4DM25/388-435  DR GENE3D; 820e7d7ea5f1056cb76a2dba821da882/388-435; 
#=GS A0A0U4DM25/388-435  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS Q79665/394-434      AC Q79665
#=GS Q79665/394-434      OS HIV-1 O_MVP5180
#=GS Q79665/394-434      DE Gag polyprotein
#=GS Q79665/394-434      DR GENE3D; c4a433e60cdad052869f10dd36dbef81/394-434; 
#=GS Q79665/394-434      DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS A0A068F0T2/394-434  AC A0A068F0T2
#=GS A0A068F0T2/394-434  OS Human immunodeficiency virus 1
#=GS A0A068F0T2/394-434  DE Gag polyprotein
#=GS A0A068F0T2/394-434  DR GENE3D; c84a8b4d3a2a447f63906cedda8b7dbd/394-434; 
#=GS A0A068F0T2/394-434  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GS A0A140ECN7/382-424  AC A0A140ECN7
#=GS A0A140ECN7/382-424  OS Human immunodeficiency virus 1
#=GS A0A140ECN7/382-424  DE Gag polyprotein
#=GS A0A140ECN7/382-424  DR GENE3D; f6aac5fbace432016a960e8775e30e0a/382-424; 
#=GS A0A140ECN7/382-424  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; 
#=GF TC 100.4 1.1E-31
#=GF SQ 12
Q77373/394-434              -------IKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNGK
Q79666/394-434              -------IKCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGR
Q77372/394-434              -------IKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNGK
Q6Y930/394-434              -------IKCFNCGKEGHVAKNCRAPRKRGCWKCGQEGHQMKDCNNGR
A0A0D4CHT9/394-434          -------IKCFNCGKEGHLAKNCRAPRRKGCWKCGQEGHQMKDCKNGR
Q6Y912/389-431              -----RPIKCFNCGKEGHVARNCRAPRKKGCWKCGQEGHQMKDCKHQA
A0A068F0U0/393-433          -------VKCFNCGKEGHVARNCRAPRKKGCWKCGQEGHHMKDCRNGR
B9V2S4/384-428              --IKKGPVKCFNCGKVGHIAKNCRAPRRKGCWKCGQDGHQMKDCRSG-
A0A0U4DM25/388-435          KPIRKGPIKCFNCGKEGHLARNCRAPRKKGCWKCGQEGHQMKDCRNGR
Q79665/394-434              -------IKCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGR
A0A068F0T2/394-434          -------IKCFNCGKEGHLARNCRAPRKKGCWKCGQEGHQMKDCKNGR
A0A140ECN7/382-424          -----ETIKCFNCGKEGHLARNCRAPRKKGCWKCGQEGHQMKDCERQA
#=GC scorecons              000000179999999699597999999779999999799899995563
#=GC scorecons_70           _______***********_*************************__*_
#=GC scorecons_80           _______********_**_*_***********************____
#=GC scorecons_90           ________*******_**_*_******__*******_*******____
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