# STOCKHOLM 1.0 #=GF ID 3.90.940.10/FF/1653 #=GF DE DNA-directed RNA polymerase subunit omega #=GF AC 3.90.940.10/FF/1653 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 78.269 #=GS Q1D2S6/1-76 AC Q1D2S6 #=GS Q1D2S6/1-76 OS Myxococcus xanthus DK 1622 #=GS Q1D2S6/1-76 DE DNA-directed RNA polymerase subunit omega #=GS Q1D2S6/1-76 DR GENE3D; 4f3c7b2864e9a8395216467a83671ea3/1-76; #=GS Q1D2S6/1-76 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus xanthus; #=GS Q1D2S6/1-76 DR EC; 2.7.7.6; #=GS A0A0F7BNE3/1-78 AC A0A0F7BNE3 #=GS A0A0F7BNE3/1-78 OS Myxococcus fulvus 124B02 #=GS A0A0F7BNE3/1-78 DE DNA-directed RNA polymerase subunit omega #=GS A0A0F7BNE3/1-78 DR GENE3D; 1145974fb97a1960dd8b35a8c172646b/1-78; #=GS A0A0F7BNE3/1-78 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus fulvus; #=GS A0A0F7BNE3/1-78 DR EC; 2.7.7.6; #=GS Q08XT1/1-82 AC Q08XT1 #=GS Q08XT1/1-82 OS Stigmatella aurantiaca DW4/3-1 #=GS Q08XT1/1-82 DE DNA-directed RNA polymerase subunit omega #=GS Q08XT1/1-82 DR GENE3D; 274ace8c327bdf04506a61a1820fa2af/1-82; #=GS Q08XT1/1-82 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Archangiaceae; Stigmatella; Stigmatella aurantiaca; #=GS Q08XT1/1-82 DR EC; 2.7.7.6; #=GS A0A0H4WUU5/1-77 AC A0A0H4WUU5 #=GS A0A0H4WUU5/1-77 OS Myxococcus hansupus #=GS A0A0H4WUU5/1-77 DE DNA-directed RNA polymerase subunit omega #=GS A0A0H4WUU5/1-77 DR GENE3D; 2944e96d866342de85de5005cdcdb5fe/1-77; #=GS A0A0H4WUU5/1-77 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus hansupus; #=GS A0A0H4WUU5/1-77 DR EC; 2.7.7.6; #=GS Q2LQ83/1-82 AC Q2LQ83 #=GS Q2LQ83/1-82 OS Syntrophus aciditrophicus SB #=GS Q2LQ83/1-82 DE DNA-directed RNA polymerase subunit omega #=GS Q2LQ83/1-82 DR GENE3D; 2952a15a1324c04e1616aaf0ff00568c/1-82; #=GS Q2LQ83/1-82 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus; Syntrophus aciditrophicus; #=GS Q2LQ83/1-82 DR EC; 2.7.7.6; #=GS A0A1F3BPF7/1-84 AC A0A1F3BPF7 #=GS A0A1F3BPF7/1-84 OS Anaeromyxobacter sp. RBG_16_69_14 #=GS A0A1F3BPF7/1-84 DE DNA-directed RNA polymerase subunit omega #=GS A0A1F3BPF7/1-84 DR GENE3D; 32a3d341081f6c59ae401e602904d402/1-84; #=GS A0A1F3BPF7/1-84 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter; Anaeromyxobacter sp. RBG_16_69_14; #=GS A0A1F3BPF7/1-84 DR EC; 2.7.7.6; #=GS L7UF32/1-78 AC L7UF32 #=GS L7UF32/1-78 OS Myxococcus stipitatus DSM 14675 #=GS L7UF32/1-78 DE DNA-directed RNA polymerase subunit omega #=GS L7UF32/1-78 DR GENE3D; 442a424b184d5218061c76584991db37/1-78; #=GS L7UF32/1-78 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus stipitatus; #=GS L7UF32/1-78 DR EC; 2.7.7.6; #=GS A0A1F3BUZ8/1-81 AC A0A1F3BUZ8 #=GS A0A1F3BUZ8/1-81 OS Anaeromyxobacter sp. RBG_16_69_14 #=GS A0A1F3BUZ8/1-81 DE DNA-directed RNA polymerase subunit omega #=GS A0A1F3BUZ8/1-81 DR GENE3D; 5b84d91e46083fe24613bcc6f5504e82/1-81; #=GS A0A1F3BUZ8/1-81 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter; Anaeromyxobacter sp. RBG_16_69_14; #=GS A0A1F3BUZ8/1-81 DR EC; 2.7.7.6; #=GS A7HGP4/1-84 AC A7HGP4 #=GS A7HGP4/1-84 OS Anaeromyxobacter sp. Fw109-5 #=GS A7HGP4/1-84 DE DNA-directed RNA polymerase subunit omega #=GS A7HGP4/1-84 DR GENE3D; 6075b9d230e383e02b1261e858b49723/1-84; #=GS A7HGP4/1-84 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter; Anaeromyxobacter sp. Fw109-5; #=GS A7HGP4/1-84 DR EC; 2.7.7.6; #=GS A0A0D6QHA6/1-83 AC A0A0D6QHA6 #=GS A0A0D6QHA6/1-83 OS Anaeromyxobacter sp. PSR-1 #=GS A0A0D6QHA6/1-83 DE DNA-directed RNA polymerase subunit omega #=GS A0A0D6QHA6/1-83 DR GENE3D; 649d14bd9b012504c19fb2028f9e0dc5/1-83; #=GS A0A0D6QHA6/1-83 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter; Anaeromyxobacter sp. PSR-1; #=GS A0A0D6QHA6/1-83 DR EC; 2.7.7.6; #=GS B4UD71/1-83 AC B4UD71 #=GS B4UD71/1-83 OS Anaeromyxobacter sp. K #=GS B4UD71/1-83 DE DNA-directed RNA polymerase subunit omega #=GS B4UD71/1-83 DR GENE3D; 649d14bd9b012504c19fb2028f9e0dc5/1-83; #=GS B4UD71/1-83 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter; Anaeromyxobacter sp. K; #=GS B4UD71/1-83 DR EC; 2.7.7.6; #=GS Q2IFJ5/1-83 AC Q2IFJ5 #=GS Q2IFJ5/1-83 OS Anaeromyxobacter dehalogenans 2CP-C #=GS Q2IFJ5/1-83 DE DNA-directed RNA polymerase subunit omega #=GS Q2IFJ5/1-83 DR GENE3D; 649d14bd9b012504c19fb2028f9e0dc5/1-83; #=GS Q2IFJ5/1-83 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter; Anaeromyxobacter dehalogenans; #=GS Q2IFJ5/1-83 DR EC; 2.7.7.6; #=GS B8J6T5/1-83 AC B8J6T5 #=GS B8J6T5/1-83 OS Anaeromyxobacter dehalogenans 2CP-1 #=GS B8J6T5/1-83 DE DNA-directed RNA polymerase subunit omega #=GS B8J6T5/1-83 DR GENE3D; 649d14bd9b012504c19fb2028f9e0dc5/1-83; #=GS B8J6T5/1-83 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter; Anaeromyxobacter dehalogenans; #=GS B8J6T5/1-83 DR EC; 2.7.7.6; #=GS A0A1F9F416/1-85 AC A0A1F9F416 #=GS A0A1F9F416/1-85 OS Deltaproteobacteria bacterium RBG_16_71_12 #=GS A0A1F9F416/1-85 DE DNA-directed RNA polymerase subunit omega #=GS A0A1F9F416/1-85 DR GENE3D; 9b4452ead34607a5f1b2b9284187bf6c/1-85; #=GS A0A1F9F416/1-85 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Deltaproteobacteria bacterium RBG_16_71_12; #=GS A0A1F9F416/1-85 DR EC; 2.7.7.6; #=GS H8MQY8/1-79 AC H8MQY8 #=GS H8MQY8/1-79 OS Corallococcus coralloides DSM 2259 #=GS H8MQY8/1-79 DE DNA-directed RNA polymerase subunit omega #=GS H8MQY8/1-79 DR GENE3D; ab4aed4b4522f3c8f6be22eba3f4d7a2/1-79; #=GS H8MQY8/1-79 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; Corallococcus coralloides; #=GS H8MQY8/1-79 DR EC; 2.7.7.6; #=GS S9P884/1-77 AC S9P884 #=GS S9P884/1-77 OS Cystobacter fuscus DSM 2262 #=GS S9P884/1-77 DE DNA-directed RNA polymerase subunit omega #=GS S9P884/1-77 DR GENE3D; bade9e09bcdaad07faf3559f4eefff98/1-77; #=GS S9P884/1-77 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Archangiaceae; Cystobacter; Cystobacter fuscus; #=GS S9P884/1-77 DR EC; 2.7.7.6; #=GS A0A085WHF3/1-86 AC A0A085WHF3 #=GS A0A085WHF3/1-86 OS Hyalangium minutum #=GS A0A085WHF3/1-86 DE DNA-directed RNA polymerase subunit omega #=GS A0A085WHF3/1-86 DR GENE3D; d3ba06435428cec6c03da20de5721da7/1-86; #=GS A0A085WHF3/1-86 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Archangiaceae; Hyalangium; Hyalangium minutum; #=GS A0A085WHF3/1-86 DR EC; 2.7.7.6; #=GS A0A0G2ZQH2/1-80 AC A0A0G2ZQH2 #=GS A0A0G2ZQH2/1-80 OS Archangium gephyra #=GS A0A0G2ZQH2/1-80 DE DNA-directed RNA polymerase subunit omega #=GS A0A0G2ZQH2/1-80 DR GENE3D; eabb43f368cc50161ec1e13a365ce980/1-80; #=GS A0A0G2ZQH2/1-80 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Archangiaceae; Archangium; Archangium gephyra; #=GS A0A0G2ZQH2/1-80 DR EC; 2.7.7.6; #=GS A0A084SUJ4/1-80 AC A0A084SUJ4 #=GS A0A084SUJ4/1-80 OS Archangium violaceum Cb vi76 #=GS A0A084SUJ4/1-80 DE DNA-directed RNA polymerase subunit omega #=GS A0A084SUJ4/1-80 DR GENE3D; eabb43f368cc50161ec1e13a365ce980/1-80; #=GS A0A084SUJ4/1-80 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Archangiaceae; Archangium; Archangium violaceum; #=GS A0A084SUJ4/1-80 DR EC; 2.7.7.6; #=GS F8CAY4/1-77 AC F8CAY4 #=GS F8CAY4/1-77 OS Myxococcus fulvus HW-1 #=GS F8CAY4/1-77 DE DNA-directed RNA polymerase subunit omega #=GS F8CAY4/1-77 DR GENE3D; f989590f5872fb3902bf12ccf0ec2215/1-77; #=GS F8CAY4/1-77 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus fulvus; #=GS F8CAY4/1-77 DR EC; 2.7.7.6; #=GS A0A0K1PCZ7/1-79 AC A0A0K1PCZ7 #=GS A0A0K1PCZ7/1-79 OS Vulgatibacter incomptus #=GS A0A0K1PCZ7/1-79 DE DNA-directed RNA polymerase subunit omega #=GS A0A0K1PCZ7/1-79 DR GENE3D; ff3fdf83a2b4419dafc94e8e9782d8eb/1-79; #=GS A0A0K1PCZ7/1-79 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Vulgatibacteraceae; Vulgatibacter; Vulgatibacter incomptus; #=GS A0A0K1PCZ7/1-79 DR EC; 2.7.7.6; #=GF TC 193.8 1.5E-62 #=GF SQ 21 Q1D2S6/1-76 MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPILEQSKNKPPVLSLREVATGRVKFDRDVREALSGKYTGDE---------- A0A0F7BNE3/1-78 MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPIIESSKNKPPVLSLREVATGRVKFDRDVREALSGKYTADTAK-------- Q08XT1/1-82 MARITVEDCLPLVDNRFALVLLGAKRARQLMAGARPIIEISKNKPPVLSLREIATGRVKFDRDVREALSGKYAGEEGAKAPA---- A0A0H4WUU5/1-77 MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPIIEQSKNKPPVLSLREVATGRVKFDRDVREALSGKYTGDEA--------- Q2LQ83/1-82 MARITVEDALKVAGNRFALVLLAVQRSKQLLRGARPLTNVRNNREIVAALREIADNKVYFSHPEYLMGAKEDFKLIADDTTE---- A0A1F3BPF7/1-84 MARVTVEDCLPLVDNRFALVLLATKRARQLMAGARPLLPQSKNKPNVLALREISTGKIHFDRSVRDALSGKFDKEKVNIGAGQT-- L7UF32/1-78 MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPIIEQSKNKPPVLSLREVATGRVKFDRDVREALSGKYAGEEPR-------- A0A1F3BUZ8/1-81 MARVTVEDCLPLVDNRFALVLLATKRTRQLMAGARPLIPNSKNKPSVMSLREIATGKIHFDRSVRDALAGKFDKERVNIGS----- A7HGP4/1-84 MARVTVEDCLPLVDNRFALVLLATKRTRQLMAGARPLQGHAKNKAPVVALREIATGKVRFDRSVRDALSGKFDKEKSTIPAGQT-- A0A0D6QHA6/1-83 MARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRFDRSVRDALSGKFDKEKVNIPAGQ--- B4UD71/1-83 MARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRFDRSVRDALSGKFDKEKVNIPAGQ--- Q2IFJ5/1-83 MARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRFDRSVRDALSGKFDKEKVNIPAGQ--- B8J6T5/1-83 MARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRFDRSVRDALSGKFDKEKVNIPAGQ--- A0A1F9F416/1-85 MARVTVEDCLVELDNRFALVLLATGRTRQLMKGSRSLVDNQKNKEPVVSLREIAAGKVKFDRPVRAVLAKRLSELQAEYEAAHGM- H8MQY8/1-79 MARVTVEDCLPYVDNRFALVLLGAKRARQLMAGARPIIETSKNKPPVLALREVATQRVKFDRDVREALSGKYVGEEAKK------- S9P884/1-77 MARVTVEDCLPLVDNRFALVLLAAKRARQLMAGARPIIDISKNKPPVLSLREVATGRVKFDRDVREALTGKYSKEPK--------- A0A085WHF3/1-86 MARITVEDCLPLVDNRFALVLLGAKRARQLMAGARPIIEISKNKPPVLSLREVATGRVKFDRDVREALSGKYSADEAKAAAAPAAP A0A0G2ZQH2/1-80 MARVTVEDCLPLVDNRFALVLLAAKRARQLMAGARPIIDTSKNKPPVLSLREVATGHVKFDRDVREALTGKYAASEKANG------ A0A084SUJ4/1-80 MARVTVEDCLPLVDNRFALVLLAAKRARQLMAGARPIIDTSKNKPPVLSLREVATGHVKFDRDVREALTGKYAASEKANG------ F8CAY4/1-77 MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPILEQSKNKPPVLSLREVATGRVKFDRDVREALSGKYQGEEP--------- A0A0K1PCZ7/1-79 MARVTIEDCLPLVENRFALVILATKRTRQLMAGARPLLDPGRNKPSVLSLREIATGKVKFDRDVDAALAGKFDKEPVAP------- #=GC scorecons 99979899796577999999896579589986989864436798669669997877685978476477567534443211110000 #=GC scorecons_70 ***********_***********_**_**********____****_**_*********_***_**_**_**_______________ #=GC scorecons_80 **********__**********___*_****_****_____***__*__***_*_*_*_***_*___*__*_______________ #=GC scorecons_90 ***_****_*____********___*_****_****______**__*__***_*___*_*__________________________ //