# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/2703
#=GF DE Ubiquitin carboxyl-terminal hydrolase 3
#=GF AC 3.90.70.10/FF/2703
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 15.523
#=GS Q01477/449-523_559-605_674-912      AC Q01477
#=GS Q01477/449-523_559-605_674-912      OS Saccharomyces cerevisiae S288C
#=GS Q01477/449-523_559-605_674-912      DE Ubiquitin carboxyl-terminal hydrolase 3
#=GS Q01477/449-523_559-605_674-912      DR GENE3D; b3ca98b7b081046c594191054128bd8e/449-523_559-605_674-912; 
#=GS Q01477/449-523_559-605_674-912      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS Q01477/449-523_559-605_674-912      DR GO; GO:0003729; GO:0004843; GO:0005515; GO:0005737; GO:0016579; GO:0034517; GO:0047484; GO:0060628; GO:1990861; 
#=GS Q01477/449-523_559-605_674-912      DR EC; 3.4.19.12; 
#=GS A0A0L8RKS4/443-518_553-601_670-906  AC A0A0L8RKS4
#=GS A0A0L8RKS4/443-518_553-601_670-906  OS Saccharomyces eubayanus
#=GS A0A0L8RKS4/443-518_553-601_670-906  DE UBP3-like protein
#=GS A0A0L8RKS4/443-518_553-601_670-906  DR GENE3D; 14cbda0909861727d428a834c96fe231/443-518_553-601_670-906; 
#=GS A0A0L8RKS4/443-518_553-601_670-906  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; 
#=GS G2WD38/449-523_559-605_674-912      AC G2WD38
#=GS G2WD38/449-523_559-605_674-912      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WD38/449-523_559-605_674-912      DE K7_Ubp3p
#=GS G2WD38/449-523_559-605_674-912      DR GENE3D; 184b8b0d3a13184b21f140c928485c3a/449-523_559-605_674-912; 
#=GS G2WD38/449-523_559-605_674-912      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1P774/449-523_559-605_674-912      AC N1P774
#=GS N1P774/449-523_559-605_674-912      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P774/449-523_559-605_674-912      DE Ubp3p
#=GS N1P774/449-523_559-605_674-912      DR GENE3D; 1aa7ca3ae15df6cc2aa95d6de9d47e6f/449-523_559-605_674-912; 
#=GS N1P774/449-523_559-605_674-912      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A0A0L8VRH7/449-523_559-605_674-912  AC A0A0L8VRH7
#=GS A0A0L8VRH7/449-523_559-605_674-912  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VRH7/449-523_559-605_674-912  DE UBP3p Ubiquitin-specific protease involved in transport and osmotic response
#=GS A0A0L8VRH7/449-523_559-605_674-912  DR GENE3D; b02c140de7382599cac7b32691b57bad/449-523_559-605_674-912; 
#=GS A0A0L8VRH7/449-523_559-605_674-912  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS B3LRR4/449-523_559-605_674-912      AC B3LRR4
#=GS B3LRR4/449-523_559-605_674-912      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LRR4/449-523_559-605_674-912      DE Ubiquitin carboxyl-terminal hydrolase 3
#=GS B3LRR4/449-523_559-605_674-912      DR GENE3D; b02c140de7382599cac7b32691b57bad/449-523_559-605_674-912; 
#=GS B3LRR4/449-523_559-605_674-912      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZRA8/449-523_559-605_674-912      AC A6ZRA8
#=GS A6ZRA8/449-523_559-605_674-912      OS Saccharomyces cerevisiae YJM789
#=GS A6ZRA8/449-523_559-605_674-912      DE Ubiquitin-specific protease
#=GS A6ZRA8/449-523_559-605_674-912      DR GENE3D; b02c140de7382599cac7b32691b57bad/449-523_559-605_674-912; 
#=GS A6ZRA8/449-523_559-605_674-912      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS E7Q344/78-152_188-234_303-491       AC E7Q344
#=GS E7Q344/78-152_188-234_303-491       OS Saccharomyces cerevisiae FostersB
#=GS E7Q344/78-152_188-234_303-491       DE Ubp3p
#=GS E7Q344/78-152_188-234_303-491       DR GENE3D; e21facf2b9a0dd987a696eedfa4d4489/78-152_188-234_303-491; 
#=GS E7Q344/78-152_188-234_303-491       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF TC 723.6 1.6E-221
#=GF SQ 8
Q01477/449-523_559-605_674-912              -ENKIPVHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLTMYKQFDKETYAVKPDEFYKTLSTIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIGSSKRGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLPFKSSSGNDVEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQKRN
A0A0L8RKS4/443-518_553-601_670-906          TENKIPLHSIIPRGIINRANICFMSSVLQVLLYCQPFIDVLNVLSTRNTNSRIGTSSCRLLDACLTMYKQFDMETYAVKPDDFYKTLSTIPKFKDLQWGHQEDAEEFLTHLLDQLHEELIFAIDGSKRGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDSSVNDLETAFKKFSEYELLXFKSSSGNDVEAKKQTFIDKLPQVLLIQFKRFSFINNVDKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKSHASGIADRNYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNIIELEDDDVLKGGEEASDSRTAYILMYQKKN
G2WD38/449-523_559-605_674-912              -ENKIPVHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLTMYKQFDKETYAVKPDEFYKTLSTIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIGSSKRGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLPFKSSSGNDVEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYDHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQKRN
N1P774/449-523_559-605_674-912              -ENKIPVHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLTMYKQFDKETYAVKPDEFYKTLSTIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIGSSKKGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLPFKSSSGNDVEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQKRN
A0A0L8VRH7/449-523_559-605_674-912          -ENKIPVHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLTMYKQFDKETYAVKPDEFYKTLSTIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIGSSKRGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLPFKSSSGNDVEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQKRN
B3LRR4/449-523_559-605_674-912              -ENKIPVHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLTMYKQFDKETYAVKPDEFYKTLSTIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIGSSKRGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLPFKSSSGNDVEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQKRN
A6ZRA8/449-523_559-605_674-912              -ENKIPVHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLTMYKQFDKETYAVKPDEFYKTLSTIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIGSSKRGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLPFKSSSGNDVEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQKRN
E7Q344/78-152_188-234_303-491               -ENKIPVHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLTMYKQFDKETYAVKPDEFYKTLSTIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIGSSKRGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLPFKSSSGNDVEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYXHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHQ-----WGKF----------RWRSL-----------------------------------
#=GC scorecons                              09999979999999999999999999999999997999997999999999997999997999999999999969999999979999999999999999999999999999999999999969977998999999999999999999999999999999999999999999999999999999997799999999999999999599999999999999999999999999999999999997999999999999999999999999299999999999999997779996996999999999633333495733333333336944633333233333333333333333333333333323
#=GC scorecons_70                           _**********************************************************************************************************************************************************************************************************_**************************************************************_************************************______*_*__________**______________________________________
#=GC scorecons_80                           _***********************************************************************_***********************************************_**********************************************************************************_**************************************************************_**********************_**_*********_______*_____________*______________________________________
#=GC scorecons_90                           _*****_***************************_*****_***********_*****_*************_********_**************************************_**__***********************************************************__*****************_*************************************_************************_****************___***_**_*********_______*_____________*______________________________________
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