# STOCKHOLM 1.0
#=GF ID 3.90.1290.10/FF/1095
#=GF DE Short stop, isoform H
#=GF AC 3.90.1290.10/FF/1095
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 29.977
#=GS A0A0P9AH38/3716-3935  AC A0A0P9AH38
#=GS A0A0P9AH38/3716-3935  OS Drosophila ananassae
#=GS A0A0P9AH38/3716-3935  DE Uncharacterized protein, isoform S
#=GS A0A0P9AH38/3716-3935  DR GENE3D; 0461a4de85962d0a946858c8717f6446/3716-3935; 
#=GS A0A0P9AH38/3716-3935  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS A0A0J9U1D3/3675-3895  AC A0A0J9U1D3
#=GS A0A0J9U1D3/3675-3895  OS Drosophila simulans
#=GS A0A0J9U1D3/3675-3895  DE Uncharacterized protein, isoform AQ
#=GS A0A0J9U1D3/3675-3895  DR GENE3D; 0794867147f48d63eac39d9c15f168d3/3675-3895; 
#=GS A0A0J9U1D3/3675-3895  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS A0A0Q9WS80/3625-3815  AC A0A0Q9WS80
#=GS A0A0Q9WS80/3625-3815  OS Drosophila willistoni
#=GS A0A0Q9WS80/3625-3815  DE Uncharacterized protein, isoform G
#=GS A0A0Q9WS80/3625-3815  DR GENE3D; 1d1272c35db45bdf3bac46bccdbf2b68/3625-3815; 
#=GS A0A0Q9WS80/3625-3815  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; willistoni group; willistoni subgroup; Drosophila willistoni; 
#=GS A0A0N8P0H4/3716-3935  AC A0A0N8P0H4
#=GS A0A0N8P0H4/3716-3935  OS Drosophila ananassae
#=GS A0A0N8P0H4/3716-3935  DE Uncharacterized protein, isoform J
#=GS A0A0N8P0H4/3716-3935  DR GENE3D; 27c3b1f4d4fa12b002c97bf8623b8538/3716-3935; 
#=GS A0A0N8P0H4/3716-3935  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS A0A0P8ZRR2/3708-3927  AC A0A0P8ZRR2
#=GS A0A0P8ZRR2/3708-3927  OS Drosophila ananassae
#=GS A0A0P8ZRR2/3708-3927  DE Uncharacterized protein, isoform O
#=GS A0A0P8ZRR2/3708-3927  DR GENE3D; 2882fa7a4be01e39e74f37f9eb1c6728/3708-3927; 
#=GS A0A0P8ZRR2/3708-3927  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS A0A0M4EJ08/3718-3934  AC A0A0M4EJ08
#=GS A0A0M4EJ08/3718-3934  OS Drosophila busckii
#=GS A0A0M4EJ08/3718-3934  DE Shot
#=GS A0A0M4EJ08/3718-3934  DR GENE3D; 57e341c64e419a0e7093ce50e6d2ad96/3718-3934; 
#=GS A0A0M4EJ08/3718-3934  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Dorsilopha; Drosophila busckii; 
#=GS A0A0J9RCC8/3777-3995  AC A0A0J9RCC8
#=GS A0A0J9RCC8/3777-3995  OS Drosophila simulans
#=GS A0A0J9RCC8/3777-3995  DE Uncharacterized protein, isoform AM
#=GS A0A0J9RCC8/3777-3995  DR GENE3D; 78703f735e52c8f22cff920daf37e058/3777-3995; 
#=GS A0A0J9RCC8/3777-3995  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS A0A0P8XRE8/3680-3880  AC A0A0P8XRE8
#=GS A0A0P8XRE8/3680-3880  OS Drosophila ananassae
#=GS A0A0P8XRE8/3680-3880  DE Uncharacterized protein, isoform AU
#=GS A0A0P8XRE8/3680-3880  DR GENE3D; 9089773fbf34907e978f8ea56699318e/3680-3880; 
#=GS A0A0P8XRE8/3680-3880  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS B4P453/3677-3910      AC B4P453
#=GS B4P453/3677-3910      OS Drosophila yakuba
#=GS B4P453/3677-3910      DE Uncharacterized protein, isoform A
#=GS B4P453/3677-3910      DR GENE3D; 91c8a06092654f0773fc113fea9a2297/3677-3910; 
#=GS B4P453/3677-3910      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS A0A0R1DQK9/3722-3942  AC A0A0R1DQK9
#=GS A0A0R1DQK9/3722-3942  OS Drosophila yakuba
#=GS A0A0R1DQK9/3722-3942  DE Uncharacterized protein, isoform T
#=GS A0A0R1DQK9/3722-3942  DR GENE3D; cf4395d2c1511d909ac2c5dfa6e6b9e4/3722-3942; 
#=GS A0A0R1DQK9/3722-3942  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS A0A0P8YDY6/3716-3935  AC A0A0P8YDY6
#=GS A0A0P8YDY6/3716-3935  OS Drosophila ananassae
#=GS A0A0P8YDY6/3716-3935  DE Uncharacterized protein, isoform AE
#=GS A0A0P8YDY6/3716-3935  DR GENE3D; f622c60521c321af281d669dbfc16381/3716-3935; 
#=GS A0A0P8YDY6/3716-3935  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GF TC 0.0 0.0E+00
#=GF SQ 11
A0A0P9AH38/3716-3935          ------------------------------------GKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECIERQWIIRADPEEQKPTGMENVTIDPQTGQVILDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIEDELVVPSTGQI------------
A0A0J9U1D3/3675-3895          -----------------------------------TGKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECVDRQWIIRANPEEQKPSGIENVTIDTQTGQVVLDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIEDDLVLPATGQI------------
A0A0Q9WS80/3625-3815          -------------------------------------KYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECIDRQWIIRANPEVQRPAAIENVVIDSQTGQVILDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISL----------------------------------------
A0A0N8P0H4/3716-3935          ------------------------------------GKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECIERQWIIRADPEEQKPTGMENVTIDPQTGQVILDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIEDELVVPSTGQI------------
A0A0P8ZRR2/3708-3927          ------------------------------------GKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECIERQWIIRADPEEQKPTGMENVTIDPQTGQVILDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIEDELVVPSTGQI------------
A0A0M4EJ08/3718-3934          -----------------------------------TGKYETLTVALERPLLDKHTGHMVDPKTGKKIPFFECIARQWIIRAQPEEQRP--IESVSIDSETGQVVLDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDAETGKLYDAETQNQVDVQRSIEIGLVDPKISLIVDTVSQQALKLDCAIEDELVLPATG--------------
A0A0J9RCC8/3777-3995          -----------------------------------TGKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECVDRQWIIRANPEEQKPSGIENVTIDTQTGQVVLDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIEDDLVLPATG--------------
A0A0P8XRE8/3680-3880          QYFIDPTTGQKISFQTLVFDMNIFNPETILVKNFSTGKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECIERQWIIRADPEEQKPTGMENVTIDPQTGQVILDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGK-------------------------------------------------------------------
B4P453/3677-3910              ----------------------------------STGKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECIDRQWIIRANPEEQKPSGIENVTIDTQTGQVVLDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIEDDLVLPATGQIKDNKNNTLVPFD
A0A0R1DQK9/3722-3942          -----------------------------------TGKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECIDRQWIIRANPEEQKPSGIENVTIDTQTGQVVLDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIEDDLVLPATGQI------------
A0A0P8YDY6/3716-3935          ------------------------------------GKYETLTAALERPLLDRHTGHMVDPKTGKKIPFFECIERQWIIRADPEEQKPTGMENVTIDPQTGQVILDDGRVCSIVEAINSGKLDIQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAAVRKGLYDPETGKLFDSESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIEDELVVPSTGQI------------
#=GC scorecons                0000000000000000000000000000000000036999999799999999899999999999999999998699999995997979456979699589999799999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999799994444444444444444444444444443333322222333333332332323311000000000000
#=GC scorecons_70             ____________________________________*************************************_*******_******__*******_*******************************************************************************************************___________________________________________________________________
#=GC scorecons_80             _____________________________________************************************_*******_**_***___***_**_*****_*************************************************************************************************___________________________________________________________________
#=GC scorecons_90             _____________________________________******_*****************************_*******_**_*_*___*_*_**__****_********************************************************************************************_****___________________________________________________________________
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