# STOCKHOLM 1.0
#=GF ID 3.40.50.2300/FF/151692
#=GF DE Hydrogenase transcriptional regulatory protein hupR1
#=GF AC 3.40.50.2300/FF/151692
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 68.080
#=GS Q9KT18/2-148       AC Q9KT18
#=GS Q9KT18/2-148       OS Vibrio cholerae O1 biovar El Tor str. N16961
#=GS Q9KT18/2-148       DE Response regulator
#=GS Q9KT18/2-148       DR GENE3D; a1335008830796fc1fc55a87615008d8/2-148; 
#=GS Q9KT18/2-148       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS Q9KT18/2-148       DR GO; GO:0000156; GO:0000160; 
#=GS A0A0W8JFZ0/11-155  AC A0A0W8JFZ0
#=GS A0A0W8JFZ0/11-155  OS Vibrio sp. MEBiC08052
#=GS A0A0W8JFZ0/11-155  DE Response regulator
#=GS A0A0W8JFZ0/11-155  DR GENE3D; 046d24f1204a9682949a1e14494bb1ef/11-155; 
#=GS A0A0W8JFZ0/11-155  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. MEBiC08052; 
#=GS A0A1N6M670/11-157  AC A0A1N6M670
#=GS A0A1N6M670/11-157  OS Vibrio sp. CECT 9026
#=GS A0A1N6M670/11-157  DE Hydrogenase transcriptional regulatory protein hupR1
#=GS A0A1N6M670/11-157  DR GENE3D; 34d00565183bd2f134cb1a59a8f46287/11-157; 
#=GS A0A1N6M670/11-157  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. CECT 9026; 
#=GS A0A0H7EYA9/2-146   AC A0A0H7EYA9
#=GS A0A0H7EYA9/2-146   OS Vibrio cholerae
#=GS A0A0H7EYA9/2-146   DE Response regulator
#=GS A0A0H7EYA9/2-146   DR GENE3D; 36f9e851da800e1470cfb38c380dafd0/2-146; 
#=GS A0A0H7EYA9/2-146   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H4JN30/2-148   AC A0A0H4JN30
#=GS A0A0H4JN30/2-148   OS Vibrio cholerae
#=GS A0A0H4JN30/2-148   DE Chemotaxis protein CheY
#=GS A0A0H4JN30/2-148   DR GENE3D; a1335008830796fc1fc55a87615008d8/2-148; 
#=GS A0A0H4JN30/2-148   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS C3LTY4/2-148       AC C3LTY4
#=GS C3LTY4/2-148       OS Vibrio cholerae M66-2
#=GS C3LTY4/2-148       DE Response regulator
#=GS C3LTY4/2-148       DR GENE3D; a1335008830796fc1fc55a87615008d8/2-148; 
#=GS C3LTY4/2-148       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0K9UT06/2-148   AC A0A0K9UT06
#=GS A0A0K9UT06/2-148   OS Vibrio cholerae 2740-80
#=GS A0A0K9UT06/2-148   DE Response regulator
#=GS A0A0K9UT06/2-148   DR GENE3D; a1335008830796fc1fc55a87615008d8/2-148; 
#=GS A0A0K9UT06/2-148   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H3Q0X9/2-148   AC A0A0H3Q0X9
#=GS A0A0H3Q0X9/2-148   OS Vibrio cholerae B33
#=GS A0A0H3Q0X9/2-148   DE Response regulator
#=GS A0A0H3Q0X9/2-148   DR GENE3D; a1335008830796fc1fc55a87615008d8/2-148; 
#=GS A0A0H3Q0X9/2-148   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0X1KVF4/2-148   AC A0A0X1KVF4
#=GS A0A0X1KVF4/2-148   OS Vibrio cholerae MO10
#=GS A0A0X1KVF4/2-148   DE Response regulator
#=GS A0A0X1KVF4/2-148   DR GENE3D; a1335008830796fc1fc55a87615008d8/2-148; 
#=GS A0A0X1KVF4/2-148   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H6VQG6/7-150   AC A0A0H6VQG6
#=GS A0A0H6VQG6/7-150   OS Vibrio cholerae
#=GS A0A0H6VQG6/7-150   DE Response regulator
#=GS A0A0H6VQG6/7-150   DR GENE3D; ab1fc5e8699f7c1ab227cd60880a978f/7-150; 
#=GS A0A0H6VQG6/7-150   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A085TMI2/2-148   AC A0A085TMI2
#=GS A0A085TMI2/2-148   OS Vibrio cholerae
#=GS A0A085TMI2/2-148   DE Response regulator
#=GS A0A085TMI2/2-148   DR GENE3D; e8e23c456b67cc768b0dc346928bc32e/2-148; 
#=GS A0A085TMI2/2-148   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS D2YPY8/2-148       AC D2YPY8
#=GS D2YPY8/2-148       OS Vibrio mimicus VM573
#=GS D2YPY8/2-148       DE Uncharacterized protein
#=GS D2YPY8/2-148       DR GENE3D; e8e23c456b67cc768b0dc346928bc32e/2-148; 
#=GS D2YPY8/2-148       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio mimicus; 
#=GS A0A0E2PHQ4/5-143   AC A0A0E2PHQ4
#=GS A0A0E2PHQ4/5-143   OS Rhodobacter capsulatus Y262
#=GS A0A0E2PHQ4/5-143   DE Chemotaxis protein CheY
#=GS A0A0E2PHQ4/5-143   DR GENE3D; e5653f2b2e6aace9c5d5128759b77838/5-143; 
#=GS A0A0E2PHQ4/5-143   DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter; Rhodobacter capsulatus; 
#=GS D5APH1/5-143       AC D5APH1
#=GS D5APH1/5-143       OS Rhodobacter capsulatus SB 1003
#=GS D5APH1/5-143       DE Hydrogenase transcriptional regulator HupR
#=GS D5APH1/5-143       DR GENE3D; e5653f2b2e6aace9c5d5128759b77838/5-143; 
#=GS D5APH1/5-143       DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter; Rhodobacter capsulatus; 
#=GS P26408/5-143       AC P26408
#=GS P26408/5-143       OS Rhodobacter capsulatus
#=GS P26408/5-143       DE Hydrogenase transcriptional regulatory protein hupR1
#=GS P26408/5-143       DR GENE3D; e5653f2b2e6aace9c5d5128759b77838/5-143; 
#=GS P26408/5-143       DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter; Rhodobacter capsulatus; 
#=GS F7YS21/16-155      AC F7YS21
#=GS F7YS21/16-155      OS Vibrio anguillarum 775
#=GS F7YS21/16-155      DE Hydrogenase transcriptional regulatory protein hupR1
#=GS F7YS21/16-155      DR GENE3D; 2ec2c24953b0b6a8c4cc7512a3430119/16-155; 
#=GS F7YS21/16-155      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio anguillarum; 
#=GF TC 232.0 4.6E-73
#=GF SQ 16
Q9KT18/2-148               QMDNMHDEKLNVLLLDDENDILKALNRVLRMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRLSRDKERLTIELEERNKE---------
A0A0W8JFZ0/11-155          ---------LTLLLLDDENDILKALNRVLRLDYDVVSFSDGREALAYLKESEVSIIISDMRMPEMDGAEFLSQAKEIAPDAIRILLTGYSDIQSTVRAVNAGGIHTYISKPWDNENLKLIIAKSAEFFRLTKEKERLSQELEERNQQLETMNQA--
A0A1N6M670/11-157          ---------LTLLLLDDENDILKALNRVLRLDYDVVSFSDGREALAYLKENEVSIIISDMRMPEMDGAEFLSQAKEIAPDAIRILLTGYSDIQSTVRAVNTGGIHTYISKPWDNENLKLIIAKSAEFFRLTKEKERLSEELEERNQQLETMNQALE
A0A0H7EYA9/2-146           --DNMHDEKLNVLLLDDENDILKALNRVLRMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRLSRDKERLTIELEERNKE---------
A0A0H4JN30/2-148           QMDNMHDEKLNVLLLDDENDILKALNRVLRMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRLSRDKERLTIELEERNKE---------
C3LTY4/2-148               QMDNMHDEKLNVLLLDDENDILKALNRVLRMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRLSRDKERLTIELEERNKE---------
A0A0K9UT06/2-148           QMDNMHDEKLNVLLLDDENDILKALNRVLRMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRLSRDKERLTIELEERNKE---------
A0A0H3Q0X9/2-148           QMDNMHDEKLNVLLLDDENDILKALNRVLRMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRLSRDKERLTIELEERNKE---------
A0A0X1KVF4/2-148           QMDNMHDEKLNVLLLDDENDILKALNRVLRMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRLSRDKERLTIELEERNKE---------
A0A0H6VQG6/7-150           -------EKLNVLLLDDENDILKALNRVLRMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRLSRDKERLTIELEERNKELEVA-----
A0A085TMI2/2-148           QMDNTHDDKLNILLLDDENDILKALNRVLRMDYNVVTFDNGADALQHLQENPVHIIISDMRMPEMDGADFLAKAREMQPQTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVAKAAEFYRLSRDKERLTIALAERNKE---------
D2YPY8/2-148               QMDNTHDDKLNILLLDDENDILKALNRVLRMDYNVVTFDNGADALQHLQENPVHIIISDMRMPEMDGADFLAKAREMQPQTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVAKAAEFYRLSRDKERLTIALAERNKE---------
A0A0E2PHQ4/5-143           --------APAILLVDDEPHSLAAMKLALEDDFDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTLARENERLSLEMRLLNST---------
D5APH1/5-143               --------APAILLVDDEPHSLAAMKLALEDDFDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTLARENERLSLEMRLLNST---------
P26408/5-143               --------APAILLVDDEPHSLAAMKLALEDDFDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTLARENERLSLEMRLLNST---------
F7YS21/16-155              ----------SLLLLDDESEILKSLTRVLRTDYDIVSFNSGKEALEYLEQHEVSIIISDMRMPEMDGADFLAKSKELYPETIRILLTGYSDIQSTVRAVNSGGIHTYIGKPWDNENLKLIVSKAAEFYRLTKEREHLAIELEKRNSELEV------
#=GC scorecons             111101113546996999555958755696497686654464596559585375799695999655967995557943967796669995955966597946999576599965969555546796675957769895577545945000000000
#=GC scorecons_70          ____________******___*_**__**__******___*__**__*_*__*_*****_****__*****___**__***********_*__*_*_***_****_**_***__*_*_____***__*_*_**_***__**___*___________
#=GC scorecons_80          ____________**_***___*_*____*__**_*________*___*_*__*_***_*_***___*_***___**__*_***___***_*__*___***__***_*__***__*_*______**__*_*_*__***__*____*___________
#=GC scorecons_90          ____________**_***___*_*____*__*__*________*___*_*_____**_*_***___*__**____*__*___*___***_*__*___*_*__***____***__*_*_______*____*____***_______*___________
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