# STOCKHOLM 1.0 #=GF ID 3.40.50.1820/FF/85490 #=GF DE Retrotransposon protein Ty1-copia subclass #=GF AC 3.40.50.1820/FF/85490 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 70.408 #=GS Q0ITC0/49-264 AC Q0ITC0 #=GS Q0ITC0/49-264 OS Oryza sativa Japonica Group #=GS Q0ITC0/49-264 DE Endo-1,31,4-beta-D-glucanase, putative, expressed #=GS Q0ITC0/49-264 DR GENE3D; 1ea021eaceecd09a68cd033857cb6c07/49-264; #=GS Q0ITC0/49-264 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS Q0J722/48-261 AC Q0J722 #=GS Q0J722/48-261 OS Oryza sativa Japonica Group #=GS Q0J722/48-261 DE Os08g0239300 protein #=GS Q0J722/48-261 DR GENE3D; ce82ae05f612d126f9e60f96b9619cd4/48-261; #=GS Q0J722/48-261 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS Q9ZT66/55-240 AC Q9ZT66 #=GS Q9ZT66/55-240 OS Zea mays #=GS Q9ZT66/55-240 DE Endo-1,3;1,4-beta-D-glucanase #=GS Q9ZT66/55-240 DR GENE3D; 03d789deb0507750381702c39b1b9c76/55-240; #=GS Q9ZT66/55-240 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS B8BC72/48-261 AC B8BC72 #=GS B8BC72/48-261 OS Oryza sativa Indica Group #=GS B8BC72/48-261 DE Putative uncharacterized protein #=GS B8BC72/48-261 DR GENE3D; 0da3a9bade6121cfded5251860282512/48-261; #=GS B8BC72/48-261 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS C5YFW5/55-262 AC C5YFW5 #=GS C5YFW5/55-262 OS Sorghum bicolor #=GS C5YFW5/55-262 DE Uncharacterized protein #=GS C5YFW5/55-262 DR GENE3D; 26935f00eaecf4467e4136265e4d495a/55-262; #=GS C5YFW5/55-262 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS A0A0E0I8Y8/262-480 AC A0A0E0I8Y8 #=GS A0A0E0I8Y8/262-480 OS Oryza nivara #=GS A0A0E0I8Y8/262-480 DE Uncharacterized protein #=GS A0A0E0I8Y8/262-480 DR GENE3D; 3d5468ba2c77a071470143a4606cc561/262-480; #=GS A0A0E0I8Y8/262-480 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza nivara; #=GS A0A0E0I8Y6/311-528 AC A0A0E0I8Y6 #=GS A0A0E0I8Y6/311-528 OS Oryza nivara #=GS A0A0E0I8Y6/311-528 DE Uncharacterized protein #=GS A0A0E0I8Y6/311-528 DR GENE3D; 467a2c7fe5b8318b14b62c60be3dbd62/311-528; #=GS A0A0E0I8Y6/311-528 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza nivara; #=GS A0A1E5UZR9/51-252 AC A0A1E5UZR9 #=GS A0A1E5UZR9/51-252 OS Dichanthelium oligosanthes #=GS A0A1E5UZR9/51-252 DE Endo-1,3 1,4-beta-D-glucanase #=GS A0A1E5UZR9/51-252 DR GENE3D; 4e025d288f74ec1ef8b346b169794c63/51-252; #=GS A0A1E5UZR9/51-252 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Dichantheliinae; Dichanthelium; Dichanthelium oligosanthes; #=GS K3YJ76/52-259 AC K3YJ76 #=GS K3YJ76/52-259 OS Setaria italica #=GS K3YJ76/52-259 DE Uncharacterized protein #=GS K3YJ76/52-259 DR GENE3D; 506159fc4023715c91276a82ffef0417/52-259; #=GS K3YJ76/52-259 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GS A0A0E0EJG8/43-260 AC A0A0E0EJG8 #=GS A0A0E0EJG8/43-260 OS Oryza meridionalis #=GS A0A0E0EJG8/43-260 DE Uncharacterized protein #=GS A0A0E0EJG8/43-260 DR GENE3D; 5a27fa388575a0fa8a8d84d9b12dee47/43-260; #=GS A0A0E0EJG8/43-260 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; #=GS A0A0D3GXS6/470-684 AC A0A0D3GXS6 #=GS A0A0D3GXS6/470-684 OS Oryza barthii #=GS A0A0D3GXS6/470-684 DE Uncharacterized protein #=GS A0A0D3GXS6/470-684 DR GENE3D; 7da2b2407938a21c2337bd592ee358bc/470-684; #=GS A0A0D3GXS6/470-684 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS A0A0A9MG25/71-277 AC A0A0A9MG25 #=GS A0A0A9MG25/71-277 OS Arundo donax #=GS A0A0A9MG25/71-277 DE Uncharacterized protein #=GS A0A0A9MG25/71-277 DR GENE3D; 86c84ed47e2983f68bfa1b874f4616c5/71-277; #=GS A0A0A9MG25/71-277 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Arundinoideae; Arundineae; Arundo; Arundo donax; #=GS A0A0E0I8Y7/293-510 AC A0A0E0I8Y7 #=GS A0A0E0I8Y7/293-510 OS Oryza nivara #=GS A0A0E0I8Y7/293-510 DE Uncharacterized protein #=GS A0A0E0I8Y7/293-510 DR GENE3D; 9fdd10cd37e5da32246692106a60c4fa/293-510; #=GS A0A0E0I8Y7/293-510 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza nivara; #=GS B4FY74/55-262 AC B4FY74 #=GS B4FY74/55-262 OS Zea mays #=GS B4FY74/55-262 DE Retrotransposon protein Ty1-copia subclass #=GS B4FY74/55-262 DR GENE3D; a9cdd061cac878adcf9ba2d075a9ffa4/55-262; #=GS B4FY74/55-262 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A0E0ASL8/516-731 AC A0A0E0ASL8 #=GS A0A0E0ASL8/516-731 OS Oryza glumipatula #=GS A0A0E0ASL8/516-731 DE Uncharacterized protein #=GS A0A0E0ASL8/516-731 DR GENE3D; da583b06967062e36847d4ee873f2e1d/516-731; #=GS A0A0E0ASL8/516-731 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; #=GS I1QGS1/50-264 AC I1QGS1 #=GS I1QGS1/50-264 OS Oryza glaberrima #=GS I1QGS1/50-264 DE Uncharacterized protein #=GS I1QGS1/50-264 DR GENE3D; ecd024fdbd0279812728253acb051ed4/50-264; #=GS I1QGS1/50-264 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; #=GS K3YJ20/68-275 AC K3YJ20 #=GS K3YJ20/68-275 OS Setaria italica #=GS K3YJ20/68-275 DE Uncharacterized protein #=GS K3YJ20/68-275 DR GENE3D; f25d5d72d37a22e505db61f2bd45a50e/68-275; #=GS K3YJ20/68-275 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GF TC 338.7 6.2E-105 #=GF SQ 17 Q0ITC0/49-264 --GVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVGVGGYCWGGKFAVEVAKTN-EVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQRND-IDFYAKIFPGVSHGFAGRYNTSDPFAL--ETGKQALALMLDWFQKH-- Q0J722/48-261 -----VHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGKFAVEVAKTN-EVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEV--KKAEQALALMLDWFHKH-- Q9ZT66/55-240 ---------GGLRAYVSGAASSSRAVVLASDVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGDYLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEGKS-VAVGGYCWGGKLSVEVGKTS-DVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHE-VPFR-------------RQDRRDGPRLHGQLVQQA------------- B8BC72/48-261 -----VHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGKFAVEVAKTN-EVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRSVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEV--KKAEQALALMLDWFHKH-- C5YFW5/55-262 ---------GGFKAYVTGPSESSRAVVLASDVFGFEAPILRTIADKVAEAGYFVVVPDFFNGDPYDTSKNITVWIKFHSPVKAAKDTKPLFAALKKEGKS-IAVGGYCWGGKFGAEIAKTN-DIKVVCLSHPSTVTAEDMKEIKCPIEILGAQNDTSTPPKLVYQFVSALRQRNE-IPYFAKIFPGVAHGFACRYNTTDPLAV--RTAEEALAYMLDWFKKY-- A0A0E0I8Y8/262-480 EAGVVVHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGKFSVEVAKTN-EVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEV--KKAEQALALMLDWFHKH-- A0A0E0I8Y6/311-528 -AGVVVHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGKFSVEVAKTN-EVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEV--KKAEQALALMLDWFHKH-- A0A1E5UZR9/51-252 ---------GGFRAYVTGAASSSHAIVLASDVFGFEAPLLRKIADNVSEAGYFVVVPDFFNGDYLDSSKNLTEWLMLHSPVKAAQDAKPLFAALKKEGKS-IGVGGYCWGGKFSVEVAKTNDDVKVICISHPYSVTADDMKDVKCPIEILGGQYDSSTPPKLMYQFVH--------IPYYAKIFPGVAHGFACRYNTTDPFAV--KTAKQALDLMIDWFDKY-- K3YJ76/52-259 ---------GGFRAYVTGKAKSRHAVVLASDVFGFEAPILRKIADKVGEAGYFVMVPDFFNGDFYDTSKNISEWIKFHSPVKAAEDAKPLFAALKKEGKS-IAVGGYCWGGKFGAKVAKTD-DIKVVCLSHPSTVTADDMKEVKCPIEILGAQNDTSTPPKLVYQFVEVLRQRTQ-IPYFAKIFPGVAHGFACRYNTTDPFAV--RTAEEALAYMLDWFNKY-- A0A0E0EJG8/43-260 EAGVVVHDLAGYEAYVTGAAHSGRAVVLASDVYGSQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLNSHSPVKEAEKAKSIFAFLRNEGKSVVGVGGYCWGGKFAVEVAKTN-EVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQRND-IDFYAKIFPGVSHGFAGRYNTSDPFAL--ETGKQALALMLDWFQKH-- A0A0D3GXS6/470-684 ---VVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVGVGGYCWGGKFAVEVAKTN-EVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQRND-IYFYAKIFPGVSHGFAGRYNTSDPFAL--ETGKQALALMLDWFQKH-- A0A0A9MG25/71-277 ---------GGFKAYVTGAAGSSRAVVLASDVFGFEAPILRKIADKVGEAGYFVVVPDLLHGDVYDASKNFSEWLNSHSPVKAAADAKPLIAALRQEGKS-IGVGGYCWGGKVGAEMAKTD-DIEVVCLSHPALLTTDDIKEVKCPIEILGAQNDTTTPPKQVYRFVHTLRQRTG-IHYFAKIFPGVAHGFACRYNTIDPFAV--KTAEQALAYMLDWFHR--- A0A0E0I8Y7/293-510 -AGVVVHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKSIVGVGGYCWGGKFSVEVAKTN-EVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEV--KKAEQALALMLDWFHKH-- B4FY74/55-262 ---------GGLRAYVSGAASSSRAVVLASDVFGYEAPLLRQIADKVAKAGYFVVVPDFLKGDYLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEGKS-VAVGGYCWGGKLSVEVGKTS-DVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHE-VPYYAKIFQGVEHGFACRYNTTDPFAV--KTAETALAYMVSWFNKH-- A0A0E0ASL8/516-731 ----VVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVGVGGYCWGGKFAVEVAKTN-EVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQRND-IDFYAKIFPGVSHGFAGRYNTSDPFAL--ETGKQALALMLDWFQKHLN I1QGS1/50-264 ---VVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVGVGGYCWGGKFAVEVAKTN-EVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQRND-IYFYAKIFPGVSHGFAGRYNTSDPFAL--ETGKQALALMLDWFQKH-- K3YJ20/68-275 ---------GGFKGYVTGAASSSRAIVLASDVFGFEAPLLRQIADKVSEAGYFVVVPDFFNGDYLDSSKNISEWIKLHSPVKAAKDAKPLFAALKKEGKS-IGLGGYCWGGKFSVEMGKTS-DVKVVSISHPYIVTTDDMKEVKCPIEILGAQYDEVAPPKLVYQYVSVLRHRTE-IPYYAKVFPGVAHGFACRYNTTHPFAV--KTAEQALGLMIDWFDKY-- #=GC scorecons 00011222269658997976494777799697797799799597989539997989996759644534494789744999996966896689595699991768999999996578769960776674699945897898988969999996979758997589779657767450747677574773777749786567756005555797547567736500 #=GC scorecons_70 _________***_******__*_******************_*****__***********_**______*_****__***************_*_*****_************_******__**_**_****__**********************_****_******_**_*___*_*_**_*_**_****_***__***_*______***__*_***_*___ #=GC scorecons_80 __________*__******__*_*___**_*****_*****_*****__*********___*_______*_****__*****_*__**__**_*__****_*_*********__***_**___*__*__***__**********_******_****_***__**_**__**_*___*_*_**_*_**_****_***___*__________**__*__**_____ #=GC scorecons_90 __________*__***_*___*_____**_*__*__**_**_*_***__***_*****___*_______*___*___*****_*__**__**_*__****___*********___*__**_________***__**_*******_******_*_*__***__**__*__________________________*________________*_____________ //