# STOCKHOLM 1.0
#=GF ID 3.40.50.150/FF/135762
#=GF DE Ribosomal RNA small subunit methyltransferase A
#=GF AC 3.40.50.150/FF/135762
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 75.986
#=GS O83357/5-208       AC O83357
#=GS O83357/5-208       OS Treponema pallidum subsp. pallidum str. Nichols
#=GS O83357/5-208       DE Ribosomal RNA small subunit methyltransferase A
#=GS O83357/5-208       DR GENE3D; db711f2025c838e86232ca48c8a63bcf/5-208; 
#=GS O83357/5-208       DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS O83357/5-208       DR EC; 2.1.1.182; 
#=GS R9UVL3/5-208       AC R9UVL3
#=GS R9UVL3/5-208       OS Treponema pallidum subsp. pallidum str. Nichols
#=GS R9UVL3/5-208       DE Ribosomal RNA small subunit methyltransferase A
#=GS R9UVL3/5-208       DR GENE3D; db711f2025c838e86232ca48c8a63bcf/5-208; 
#=GS R9UVL3/5-208       DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS R9UVL3/5-208       DR EC; 2.1.1.182; 
#=GS M2CIB3/9-219       AC M2CIB3
#=GS M2CIB3/9-219       OS Treponema denticola ATCC 35404
#=GS M2CIB3/9-219       DE Ribosomal RNA small subunit methyltransferase A
#=GS M2CIB3/9-219       DR GENE3D; 00909c918d8c16d103951e111a2ad200/9-219; 
#=GS M2CIB3/9-219       DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS M2CIB3/9-219       DR EC; 2.1.1.182; 
#=GS Q73NS2/9-219       AC Q73NS2
#=GS Q73NS2/9-219       OS Treponema denticola ATCC 35405
#=GS Q73NS2/9-219       DE Ribosomal RNA small subunit methyltransferase A
#=GS Q73NS2/9-219       DR GENE3D; 00909c918d8c16d103951e111a2ad200/9-219; 
#=GS Q73NS2/9-219       DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS Q73NS2/9-219       DR EC; 2.1.1.182; 
#=GS S3L1Q0/11-218      AC S3L1Q0
#=GS S3L1Q0/11-218      OS Treponema denticola SP23
#=GS S3L1Q0/11-218      DE Ribosomal RNA small subunit methyltransferase A
#=GS S3L1Q0/11-218      DR GENE3D; 17197c1bc658bc02ac9e1e8b27c6ef1b/11-218; 
#=GS S3L1Q0/11-218      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS S3L1Q0/11-218      DR EC; 2.1.1.182; 
#=GS M2S3V5/11-218      AC M2S3V5
#=GS M2S3V5/11-218      OS Treponema denticola US-Trep
#=GS M2S3V5/11-218      DE Ribosomal RNA small subunit methyltransferase A
#=GS M2S3V5/11-218      DR GENE3D; 226ce4f579755d2d9fa98167b6b6eafc/11-218; 
#=GS M2S3V5/11-218      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS M2S3V5/11-218      DR EC; 2.1.1.182; 
#=GS A0A0E2EED7/11-218  AC A0A0E2EED7
#=GS A0A0E2EED7/11-218  OS Treponema denticola AL-2
#=GS A0A0E2EED7/11-218  DE Ribosomal RNA small subunit methyltransferase A
#=GS A0A0E2EED7/11-218  DR GENE3D; 2915270592dbecdceb96400bc43c3a19/11-218; 
#=GS A0A0E2EED7/11-218  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS A0A0E2EED7/11-218  DR EC; 2.1.1.182; 
#=GS A0A088REW1/11-217  AC A0A088REW1
#=GS A0A088REW1/11-217  OS Treponema putidum
#=GS A0A088REW1/11-217  DE Ribosomal RNA small subunit methyltransferase A
#=GS A0A088REW1/11-217  DR GENE3D; 3b4120b35502fe702d2e4d8b34fa35fa/11-217; 
#=GS A0A088REW1/11-217  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema putidum; 
#=GS A0A088REW1/11-217  DR EC; 2.1.1.182; 
#=GS E9S6Y1/11-218      AC E9S6Y1
#=GS E9S6Y1/11-218      OS Treponema denticola F0402
#=GS E9S6Y1/11-218      DE Ribosomal RNA small subunit methyltransferase A
#=GS E9S6Y1/11-218      DR GENE3D; 46283da16166ec034129ca47384b8a33/11-218; 
#=GS E9S6Y1/11-218      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS E9S6Y1/11-218      DR EC; 2.1.1.182; 
#=GS F7XSE9/5-208       AC F7XSE9
#=GS F7XSE9/5-208       OS Treponema paraluiscuniculi Cuniculi A
#=GS F7XSE9/5-208       DE Ribosomal RNA small subunit methyltransferase A
#=GS F7XSE9/5-208       DR GENE3D; 63b3667129b74b5b4941e84b00bb3dec/5-208; 
#=GS F7XSE9/5-208       DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema paraluiscuniculi; 
#=GS F7XSE9/5-208       DR EC; 2.1.1.182; 
#=GS M2BUL6/11-218      AC M2BUL6
#=GS M2BUL6/11-218      OS Treponema denticola H1-T
#=GS M2BUL6/11-218      DE Ribosomal RNA small subunit methyltransferase A
#=GS M2BUL6/11-218      DR GENE3D; 99f7e2deb4325ae5cb3638fb9c465b1e/11-218; 
#=GS M2BUL6/11-218      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS M2BUL6/11-218      DR EC; 2.1.1.182; 
#=GS A0A0F6MN35/11-218  AC A0A0F6MN35
#=GS A0A0F6MN35/11-218  OS Treponema denticola OTK
#=GS A0A0F6MN35/11-218  DE Ribosomal RNA small subunit methyltransferase A
#=GS A0A0F6MN35/11-218  DR GENE3D; d5df8a32756ed71b215a05e7c42ebdd3/11-218; 
#=GS A0A0F6MN35/11-218  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS A0A0F6MN35/11-218  DR EC; 2.1.1.182; 
#=GS A0A0E2E3S2/11-218  AC A0A0E2E3S2
#=GS A0A0E2E3S2/11-218  OS Treponema denticola H-22
#=GS A0A0E2E3S2/11-218  DE Ribosomal RNA small subunit methyltransferase A
#=GS A0A0E2E3S2/11-218  DR GENE3D; d9ba2354ed5c2a842a9cffe17ed75769/11-218; 
#=GS A0A0E2E3S2/11-218  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS A0A0E2E3S2/11-218  DR EC; 2.1.1.182; 
#=GS B2S2T4/5-208       AC B2S2T4
#=GS B2S2T4/5-208       OS Treponema pallidum subsp. pallidum SS14
#=GS B2S2T4/5-208       DE Ribosomal RNA small subunit methyltransferase A
#=GS B2S2T4/5-208       DR GENE3D; db711f2025c838e86232ca48c8a63bcf/5-208; 
#=GS B2S2T4/5-208       DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS B2S2T4/5-208       DR EC; 2.1.1.182; 
#=GS H6KV49/5-208       AC H6KV49
#=GS H6KV49/5-208       OS Treponema pallidum subsp. pertenue str. CDC2
#=GS H6KV49/5-208       DE Ribosomal RNA small subunit methyltransferase A
#=GS H6KV49/5-208       DR GENE3D; db711f2025c838e86232ca48c8a63bcf/5-208; 
#=GS H6KV49/5-208       DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pertenue; 
#=GS H6KV49/5-208       DR EC; 2.1.1.182; 
#=GS A0A1L7DEB8/5-208   AC A0A1L7DEB8
#=GS A0A1L7DEB8/5-208   OS Treponema pallidum subsp. pallidum
#=GS A0A1L7DEB8/5-208   DE 16S rRNA methyltransferase
#=GS A0A1L7DEB8/5-208   DR GENE3D; db711f2025c838e86232ca48c8a63bcf/5-208; 
#=GS A0A1L7DEB8/5-208   DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS A0A1L7DEB8/5-208   DR EC; 2.1.1.182; 
#=GS A0A0A7X2D6/5-208   AC A0A0A7X2D6
#=GS A0A0A7X2D6/5-208   OS Treponema pallidum subsp. endemicum str. Bosnia A
#=GS A0A0A7X2D6/5-208   DE Ribosomal RNA small subunit methyltransferase A
#=GS A0A0A7X2D6/5-208   DR GENE3D; db711f2025c838e86232ca48c8a63bcf/5-208; 
#=GS A0A0A7X2D6/5-208   DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. endemicum; 
#=GS A0A0A7X2D6/5-208   DR EC; 2.1.1.182; 
#=GS B1ZW80/3-208       AC B1ZW80
#=GS B1ZW80/3-208       OS Opitutus terrae PB90-1
#=GS B1ZW80/3-208       DE Ribosomal RNA small subunit methyltransferase A
#=GS B1ZW80/3-208       DR GENE3D; e859bb09db85b97b379a40ba531d0f54/3-208; 
#=GS B1ZW80/3-208       DR ORG; Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus; Opitutus terrae; 
#=GS B1ZW80/3-208       DR EC; 2.1.1.182; 
#=GS M2BKD4/11-218      AC M2BKD4
#=GS M2BKD4/11-218      OS Treponema denticola SP33
#=GS M2BKD4/11-218      DE Ribosomal RNA small subunit methyltransferase A
#=GS M2BKD4/11-218      DR GENE3D; ebc81e599eaedb6221e9a2c0b3bdd5bc/11-218; 
#=GS M2BKD4/11-218      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS M2BKD4/11-218      DR EC; 2.1.1.182; 
#=GF TC 360.6 1.2E-111
#=GF SQ 19
O83357/5-208               --NYNSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTALLVQNSDFLTVFEIDRGFVQTLRKLF----DAHVRVIEGDVLQQWHAAA-AQE-QPACVLGNLPYNIAARFIGNTIESGYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEVRVIRNVAPVCFWPRPHVVSQALVLTKRNAV
R9UVL3/5-208               --NYNSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTALLVQNSDFLTVFEIDRGFVQTLRKLF----DAHVRVIEGDVLQQWHAAA-AQE-QPACVLGNLPYNIAARFIGNTIESGYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEVRVIRNVAPVCFWPRPHVVSQALVLTKRNAV
M2CIB3/9-219               PPNYDSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLTLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKIFLENSKQNFTLIEGDVQKNWLPYL-IEHGKPNVFFGNLPYNIASDLIASTVEAGVVFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKAKKEF
Q73NS2/9-219               PPNYDSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLTLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKIFLENSKQNFTLIEGDVQKNWLPYL-IEHGKPNVFFGNLPYNIASDLIASTVEAGVVFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKAKKEF
S3L1Q0/11-218              --NYDSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLNLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYL-REHGKPDVFFGNLPYNIASELIASTVEAGVVFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKTKKE-
M2S3V5/11-218              --NYDSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLNLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYL-REHGKPDVFFGNLPYNIASDLIASTVEAGVVFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKAKKE-
A0A0E2EED7/11-218          --NYDSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLNLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKFFLENSKQNFTLIEGDVQKNWLPYL-REHGKPDVFFGNLPYNIASDLIASTVEAGVVFDTMLFTVQKEAAERITARPDNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKAKKE-
A0A088REW1/11-217          --NYDSPAELKALLETLGFSMQKKFGQNFLVDKKTRESLISLLELKEETRIWEVGPGLGAMTCLLLEKGVNLTAFEIDKGFISLLKKFFLDKG-QNFTLVEGDVKKNWLPYL-KEHGKPDIFFGNLPYNIASELIASTIEAGAVFDTMLFTVQKEAAERITARPDNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKAKKE-
E9S6Y1/11-218              --NYDSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLTLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYL-REHGKPDVFFGNLPYNIASDLIASTVEAGVVFDTMLFTVQKEAAERITARPGNKNYTAFSVLCALFYECKIVKTIPASAFWPQPNVESAAVLFKAKKE-
F7XSE9/5-208               --NYNSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTALLVQNSDFLTVFEIDRGFVQTLRKLF----DAHIRVIEGDVLQQWHAAA-AQE-QPACVLGNLPYNIAARFIGNTIESGYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEVRVIRNVAPVCFWPRPHVVSQALVLTKRNAV
M2BUL6/11-218              --NYDSPAELKSLLETLGFAMQKKFGQNFLIDKRIRENLISFLTLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYL-REHGKPDVFFGNLPYNIASELIASTVEAGVVFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKAKKE-
A0A0F6MN35/11-218          --NYDSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLNLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYL-REHGKPDVFFGNLPYNIASDLIASTVEAGVVFDTMLFTVQKEAAERITARPDNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKAKKE-
A0A0E2E3S2/11-218          --NYDSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLTLDKGTRVWEVGPGLGAMTYLLLEKGVHLTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYL-REHGKPDVFFGNLPYNIASDLIASTVEAGVVFDTMLFTVQKEAAERITARPDNKNYTAFSVLCSLFYECKIVKTIPASAFWPQPNVESAAVLFKAKKE-
B2S2T4/5-208               --NYNSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTALLVQNSDFLTVFEIDRGFVQTLRKLF----DAHVRVIEGDVLQQWHAAA-AQE-QPACVLGNLPYNIAARFIGNTIESGYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEVRVIRNVAPVCFWPRPHVVSQALVLTKRNAV
H6KV49/5-208               --NYNSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTALLVQNSDFLTVFEIDRGFVQTLRKLF----DAHVRVIEGDVLQQWHAAA-AQE-QPACVLGNLPYNIAARFIGNTIESGYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEVRVIRNVAPVCFWPRPHVVSQALVLTKRNAV
A0A1L7DEB8/5-208           --NYNSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTALLVQNSDFLTVFEIDRGFVQTLRKLF----DAHVRVIEGDVLQQWHAAA-AQE-QPACVLGNLPYNIAARFIGNTIESGYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEVRVIRNVAPVCFWPRPHVVSQALVLTKRNAV
A0A0A7X2D6/5-208           --NYNSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTALLVQNSDFLTVFEIDRGFVQTLRKLF----DAHVRVIEGDVLQQWHAAA-AQE-QPACVLGNLPYNIAARFIGNTIESGYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEVRVIRNVAPVCFWPRPHVVSQALVLTKRNAV
B1ZW80/3-208               ----LTPTATRELLAQLGHQPKRFLGQNFLVDGNIVRKSLELAQVRRGDAVVEIGPGLGTLTGALLEAGAEVWAVEKDRTLHAHLSSTLQPRHPDTFHLLEADAVEHPLADLPAAHAAAFKIVANLPYAIATPWL-DAVLGGPLPERMVLMLQQEAAQRYVAMPGSKSFGAISVFLQSAYEVAPGHRVEASCFFPRPDVDSYLLHLVRRAE-
M2BKD4/11-218              --NYDSPAELKALLETLGFAMQKKFGQNFLIDKKTRDSLISFLNLDKGTRVWEVGPGLGAMTYLLLEKGVKLTAFEIDKGFISLLKKFFLENSKQSFTLVEGDVQKNWLPYL-NEHGKPDVFFGNLPYNIASELIASTVEAGIVFDTMLFTVQKEAAERITARPDNKNYTAFSVLCSLFYECRIVKTIPASAFWPQPNVESAAVLFKAKKE-
#=GC scorecons             00775765575469554954768759999969445744764574556857879796969889479665644876797977855496758222144555669797455756450455257445579999799545845877593675596578989564957949559485479987543995665657565597969594947656447551
#=GC scorecons_70          __**_*___*__**___*__*_**_*****_*___*__**__*___**_******_******_****____**_*******___*_*_*_________******___*__________*____********___*__***_*_**__**_*****___*_**_*__*_*__*****___**____*_*____*****_*_*_**_*__*___
#=GC scorecons_80          _____*___*___*___*__*_*__*****_*___*__*___*____*_****_*_*_****_**______**_****_**___*_*_*___________****______________*____********___*__*_*_*__*__*__*****___*_**_*__*_*__*****___**___________***_*_*_*_*_________
#=GC scorecons_90          _____________*___*____*__*****_*_______________*__*_*_*_*_*_**__*__________*_*______*_______________*_*_____________________****_**__________*_____*____*_*___*__*_*__*_*___**_____**___________*_*_*_*_*___________
//