# STOCKHOLM 1.0
#=GF ID 3.40.5.10/FF/1544
#=GF DE 50S ribosomal protein L9
#=GF AC 3.40.5.10/FF/1544
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 46.831
#=GS R9UUW1/1-59      AC R9UUW1
#=GS R9UUW1/1-59      OS Treponema pallidum subsp. pallidum str. Nichols
#=GS R9UUW1/1-59      DE 50S ribosomal protein L9
#=GS R9UUW1/1-59      DR GENE3D; 458a1b688cf93bd96f0e86b2497bfa03/1-59; 
#=GS R9UUW1/1-59      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS O83099/1-59      AC O83099
#=GS O83099/1-59      OS Treponema pallidum subsp. pallidum str. Nichols
#=GS O83099/1-59      DE 50S ribosomal protein L9
#=GS O83099/1-59      DR GENE3D; 458a1b688cf93bd96f0e86b2497bfa03/1-59; 
#=GS O83099/1-59      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS S6A8J5/1-52      AC S6A8J5
#=GS S6A8J5/1-52      OS Treponema pedis str. T A4
#=GS S6A8J5/1-52      DE 50S ribosomal protein L9
#=GS S6A8J5/1-52      DR GENE3D; 33be5161ff15d252009b966164cc9d36/1-52; 
#=GS S6A8J5/1-52      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pedis; 
#=GS C8PSG0/1-60      AC C8PSG0
#=GS C8PSG0/1-60      OS Treponema vincentii ATCC 35580
#=GS C8PSG0/1-60      DE 50S ribosomal protein L9
#=GS C8PSG0/1-60      DR GENE3D; 728c4f57b2fc0a0398f965bd09f442a7/1-60; 
#=GS C8PSG0/1-60      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema vincentii; 
#=GS A0A088RHS7/1-60  AC A0A088RHS7
#=GS A0A088RHS7/1-60  OS Treponema putidum
#=GS A0A088RHS7/1-60  DE 50S ribosomal protein L9
#=GS A0A088RHS7/1-60  DR GENE3D; 9b032e5bd1d57917d2c59674fac101e2/1-60; 
#=GS A0A088RHS7/1-60  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema putidum; 
#=GS A0A0A0X701/1-62  AC A0A0A0X701
#=GS A0A0A0X701/1-62  OS Treponema sp. OMZ 838
#=GS A0A0A0X701/1-62  DE 50S ribosomal protein L9
#=GS A0A0A0X701/1-62  DR GENE3D; a991098646f6f0082762227a586c36e0/1-62; 
#=GS A0A0A0X701/1-62  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema sp. OMZ 838; 
#=GS Q73M35/1-61      AC Q73M35
#=GS Q73M35/1-61      OS Treponema denticola ATCC 35405
#=GS Q73M35/1-61      DE 50S ribosomal protein L9
#=GS Q73M35/1-61      DR GENE3D; f9eedc535dec3d407981d6aee9cf1eeb/1-61; 
#=GS Q73M35/1-61      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS M2D3N3/1-61      AC M2D3N3
#=GS M2D3N3/1-61      OS Treponema denticola ATCC 35404
#=GS M2D3N3/1-61      DE 50S ribosomal protein L9
#=GS M2D3N3/1-61      DR GENE3D; f9eedc535dec3d407981d6aee9cf1eeb/1-61; 
#=GS M2D3N3/1-61      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema denticola; 
#=GS A0A0A7X1L5/1-59  AC A0A0A7X1L5
#=GS A0A0A7X1L5/1-59  OS Treponema pallidum subsp. endemicum str. Bosnia A
#=GS A0A0A7X1L5/1-59  DE 50S ribosomal protein L9
#=GS A0A0A7X1L5/1-59  DR GENE3D; 458a1b688cf93bd96f0e86b2497bfa03/1-59; 
#=GS A0A0A7X1L5/1-59  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. endemicum; 
#=GS F7XRQ2/1-59      AC F7XRQ2
#=GS F7XRQ2/1-59      OS Treponema paraluiscuniculi Cuniculi A
#=GS F7XRQ2/1-59      DE 50S ribosomal protein L9
#=GS F7XRQ2/1-59      DR GENE3D; 458a1b688cf93bd96f0e86b2497bfa03/1-59; 
#=GS F7XRQ2/1-59      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema paraluiscuniculi; 
#=GS A0A1L7DDR1/1-59  AC A0A1L7DDR1
#=GS A0A1L7DDR1/1-59  OS Treponema pallidum subsp. pallidum
#=GS A0A1L7DDR1/1-59  DE 50S ribosomal protein L9
#=GS A0A1L7DDR1/1-59  DR GENE3D; 458a1b688cf93bd96f0e86b2497bfa03/1-59; 
#=GS A0A1L7DDR1/1-59  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS B2S208/1-59      AC B2S208
#=GS B2S208/1-59      OS Treponema pallidum subsp. pallidum SS14
#=GS B2S208/1-59      DE 50S ribosomal protein L9
#=GS B2S208/1-59      DR GENE3D; 458a1b688cf93bd96f0e86b2497bfa03/1-59; 
#=GS B2S208/1-59      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS H6KUA5/1-59      AC H6KUA5
#=GS H6KUA5/1-59      OS Treponema pallidum subsp. pertenue str. CDC2
#=GS H6KUA5/1-59      DE 50S ribosomal protein L9
#=GS H6KUA5/1-59      DR GENE3D; 458a1b688cf93bd96f0e86b2497bfa03/1-59; 
#=GS H6KUA5/1-59      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pertenue; 
#=GF TC 138.8 6.1E-45
#=GF SQ 13
R9UUW1/1-59              MKIILNQDVKILGEEGDVKEVAAGYFRNYLYPRNLAVPHNRFTVARFKQRQQDIEMRKS---
O83099/1-59              MKIILNQDVKILGEEGDVKEVAAGYFRNYLYPRNLAVPHNRFTVARFKQRQQDIEMRKS---
S6A8J5/1-52              MKVILNEDVKHLGEEGDIKNVAKGYARNYLFPRNLAVPCNDITVAHFESRKE----------
C8PSG0/1-60              MKVILNEDVKHLGEEGDIKDVAKGYARNYLFPRNLAVPCNSFTLAHFESRKEEIEQRKAV--
A0A088RHS7/1-60          MKVILNEDVKYLGEEGDIKNVAKGYARNYLFPRNLAVPCNEFTLAHFESRKEEIEAKKAA--
A0A0A0X701/1-62          MKVILNEDVKHLGEEGDIKDVAKGYARNYLFPRNLAVPCNSFTLAHFESRKEEIEQRKAVKR
Q73M35/1-61              MKVILNEDVKYLGEEGDIKNVAKGYARNYLFPRNLAVPCNEFTLAHFESRKEEIEAKKAAK-
M2D3N3/1-61              MKVILNEDVKYLGEEGDIKNVAKGYARNYLFPRNLAVPCNEFTLAHFESRKEEIEAKKAAK-
A0A0A7X1L5/1-59          MKIILNQDVKILGEEGDVKEVAAGYFRNYLYPRNLAVPHNRFTVARFKQRQQDIEMRKS---
F7XRQ2/1-59              MKIILNQDVKILGEEGDVKEVAAGYFRNYLYPRNLAVPHNRFTVARFKQRQQDIEMRKS---
A0A1L7DDR1/1-59          MKIILNQDVKILGEEGDVKEVAAGYFRNYLYPRNLAVPHNRFTVARFKQRQQDIEMRKS---
B2S208/1-59              MKIILNQDVKILGEEGDVKEVAAGYFRNYLYPRNLAVPHNRFTVARFKQRQQDIEMRKS---
H6KUA5/1-59              MKIILNQDVKILGEEGDVKEVAAGYFRNYLYPRNLAVPHNRFTVARFKQRQQDIEMRKS---
#=GC scorecons           99799969994999999795995994999979999999594796969659665663564000
#=GC scorecons_70        **********_********_**_**_************_*_******__***_**__*____
#=GC scorecons_80        **_***_***_******_*_**_**_************_*_**_*_*__*____________
#=GC scorecons_90        **_***_***_******_*_**_**_****_*******_*__*_*_*__*____________
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