# STOCKHOLM 1.0
#=GF ID 3.40.220.10/FF/2556
#=GF DE Putative replicase polyprotein 1a
#=GF AC 3.40.220.10/FF/2556
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 12.130
#=GS 3ejgA00/29-193        AC P0C6X1
#=GS 3ejgA00/29-193        OS Human coronavirus 229E
#=GS 3ejgA00/29-193        DE Replicase polyprotein 1ab
#=GS 3ejgA00/29-193        DR CATH; 3ejg; A:1-165; 
#=GS 3ejgA00/29-193        DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; 
#=GS 3ejgA00/29-193        DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS 3ewqA00/1-168         AC P0C6U2
#=GS 3ewqA00/1-168         OS Human coronavirus 229E
#=GS 3ewqA00/1-168         DE Replicase polyprotein 1a
#=GS 3ewqA00/1-168         DR CATH; 3ewq; A:1-167; 
#=GS 3ewqA00/1-168         DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; 
#=GS 3ewqA00/1-168         DR EC; 3.4.19.12; 
#=GS 3ewrA00/1-168         AC P0C6U2
#=GS 3ewrA00/1-168         OS Human coronavirus 229E
#=GS 3ewrA00/1-168         DE Replicase polyprotein 1a
#=GS 3ewrA00/1-168         DR CATH; 3ewr; A:1-167; 
#=GS 3ewrA00/1-168         DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; 
#=GS 3ewrA00/1-168         DR EC; 3.4.19.12; 
#=GS P0C6X1/1270-1434      AC P0C6X1
#=GS P0C6X1/1270-1434      OS Human coronavirus 229E
#=GS P0C6X1/1270-1434      DE Replicase polyprotein 1ab
#=GS P0C6X1/1270-1434      DR GENE3D; 62efc71e5958c1930fbb3a2122d83e3e/1270-1434; 
#=GS P0C6X1/1270-1434      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; 
#=GS P0C6X1/1270-1434      DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS P0C6U2/1270-1434      AC P0C6U2
#=GS P0C6U2/1270-1434      OS Human coronavirus 229E
#=GS P0C6U2/1270-1434      DE Replicase polyprotein 1a
#=GS P0C6U2/1270-1434      DR GENE3D; f62d9a0850962d0d4a3c6bcb13a88ad4/1270-1434; 
#=GS P0C6U2/1270-1434      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; 
#=GS P0C6U2/1270-1434      DR EC; 3.4.19.12; 
#=GS S5YGT4/1268-1432      AC S5YGT4
#=GS S5YGT4/1268-1432      OS Human coronavirus 229E
#=GS S5YGT4/1268-1432      DE Putative replicase polyprotein 1a
#=GS S5YGT4/1268-1432      DR GENE3D; 3b1f0d4932194119fb9a3e91f96ad407/1268-1432; 
#=GS S5YGT4/1268-1432      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; 
#=GS A0A0U2GN93/1277-1441  AC A0A0U2GN93
#=GS A0A0U2GN93/1277-1441  OS Camel alphacoronavirus
#=GS A0A0U2GN93/1277-1441  DE Polyprotein ORF1a
#=GS A0A0U2GN93/1277-1441  DR GENE3D; b6f2e6a3698a8f388a9903390abbe245/1277-1441; 
#=GS A0A0U2GN93/1277-1441  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; 
#=GF TC 377.0 1.7E-117
#=GF SQ 7
3ejgA00/29-193                -EKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSG--
3ewqA00/1-168                 KEKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLV
3ewrA00/1-168                 KEKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLV
P0C6X1/1270-1434              -EKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSG--
P0C6U2/1270-1434              -EKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSG--
S5YGT4/1268-1432              -EKLNAFLVHDNVAFYQGDVDTVVNGVEFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVRVGTGVMVECDSLRIFNVVGPRKGKHERDLLVKAYNTINNEQGTPLTPILSCGIFGVKLETSLEVLLDVCNTKEFKVFVYTDTEVCKVKDFVSG--
A0A0U2GN93/1277-1441          -VKLNSFLTCNNVSFYQGDIDAVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGAGVMVECDGLRIFNVVGPRKGKHERDLLIKAYNTINNEQGIPLTPILSCGIFGVKLETSLEVLLAVCNTKEVKVFVYTDTEVCKVKDFVSG--
#=GC scorecons                059996995569969999979699999799999999999999999999999999999999999999999999799699999996999999999999999999979999999999969999999999996999999999959999997999999999999999999900
#=GC scorecons_70             __***_**__***_*********************************************************************_*******************************_***********************_**************************__
#=GC scorecons_80             __***_**___**_*****_*_*****************************************************_*******_*******************************_************_**********_******_*******************__
#=GC scorecons_90             __***_**___**_*****_*_*****_********************************************_**_*******_*******************_***********_************_**********_******_*******************__
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