# STOCKHOLM 1.0 #=GF ID 3.40.190.10/FF/204174 #=GF DE Virulence sensor protein BvgS #=GF AC 3.40.190.10/FF/204174 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 54.055 #=GS 3mpkA01/17-118_214-251 AC P16575 #=GS 3mpkA01/17-118_214-251 OS Bordetella pertussis Tohama I #=GS 3mpkA01/17-118_214-251 DE Virulence sensor protein BvgS #=GS 3mpkA01/17-118_214-251 DR CATH; 3mpk; A:292-393; A:489-526; #=GS 3mpkA01/17-118_214-251 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS 3mpkA01/17-118_214-251 DR EC; 2.7.13.3; #=GS 3mplA01/17-118_214-251 AC P16575 #=GS 3mplA01/17-118_214-251 OS Bordetella pertussis Tohama I #=GS 3mplA01/17-118_214-251 DE Virulence sensor protein BvgS #=GS 3mplA01/17-118_214-251 DR CATH; 3mpl; A:292-393; A:489-526; #=GS 3mplA01/17-118_214-251 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS 3mplA01/17-118_214-251 DR EC; 2.7.13.3; #=GS 4q0cA03/316-426_522-562 AC P16575 #=GS 4q0cA03/316-426_522-562 OS Bordetella pertussis Tohama I #=GS 4q0cA03/316-426_522-562 DE Virulence sensor protein BvgS #=GS 4q0cA03/316-426_522-562 DR CATH; 4q0c; A:283-393; A:489-529; #=GS 4q0cA03/316-426_522-562 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS 4q0cA03/316-426_522-562 DR EC; 2.7.13.3; #=GS 4q0cB03/316-426_522-562 AC P16575 #=GS 4q0cB03/316-426_522-562 OS Bordetella pertussis Tohama I #=GS 4q0cB03/316-426_522-562 DE Virulence sensor protein BvgS #=GS 4q0cB03/316-426_522-562 DR CATH; 4q0c; B:283-393; B:489-529; #=GS 4q0cB03/316-426_522-562 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS 4q0cB03/316-426_522-562 DR EC; 2.7.13.3; #=GS 4q0cC03/316-426_522-562 AC P16575 #=GS 4q0cC03/316-426_522-562 OS Bordetella pertussis Tohama I #=GS 4q0cC03/316-426_522-562 DE Virulence sensor protein BvgS #=GS 4q0cC03/316-426_522-562 DR CATH; 4q0c; C:283-393; C:489-529; #=GS 4q0cC03/316-426_522-562 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS 4q0cC03/316-426_522-562 DR EC; 2.7.13.3; #=GS 4q0cD03/316-426_522-562 AC P16575 #=GS 4q0cD03/316-426_522-562 OS Bordetella pertussis Tohama I #=GS 4q0cD03/316-426_522-562 DE Virulence sensor protein BvgS #=GS 4q0cD03/316-426_522-562 DR CATH; 4q0c; D:283-393; D:489-529; #=GS 4q0cD03/316-426_522-562 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS 4q0cD03/316-426_522-562 DR EC; 2.7.13.3; #=GS P16575/299-393_489-525 AC P16575 #=GS P16575/299-393_489-525 OS Bordetella pertussis Tohama I #=GS P16575/299-393_489-525 DE Virulence sensor protein BvgS #=GS P16575/299-393_489-525 DR GENE3D; 09c77612881e0040d13af8ccdae79867/299-393_489-525; #=GS P16575/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS P16575/299-393_489-525 DR EC; 2.7.13.3; #=GS A0A0C6P0E1/299-393_489-525 AC A0A0C6P0E1 #=GS A0A0C6P0E1/299-393_489-525 OS Bordetella bronchiseptica 253 #=GS A0A0C6P0E1/299-393_489-525 DE Histidine kinase #=GS A0A0C6P0E1/299-393_489-525 DR GENE3D; 04251d7cda161770e89d6f9e045277f3/299-393_489-525; #=GS A0A0C6P0E1/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella bronchiseptica; #=GS A0A0C6P0E1/299-393_489-525 DR EC; 2.7.13.3; #=GS P26762/299-393_489-525 AC P26762 #=GS P26762/299-393_489-525 OS Bordetella bronchiseptica RB50 #=GS P26762/299-393_489-525 DE Virulence sensor protein BvgS #=GS P26762/299-393_489-525 DR GENE3D; 04f91eabb00bacc684746e72ae16085d/299-393_489-525; #=GS P26762/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella bronchiseptica; #=GS P26762/299-393_489-525 DR EC; 2.7.13.3; #=GS A0A131HSS5/299-393_489-525 AC A0A131HSS5 #=GS A0A131HSS5/299-393_489-525 OS Bordetella pertussis #=GS A0A131HSS5/299-393_489-525 DE Histidine kinase #=GS A0A131HSS5/299-393_489-525 DR GENE3D; 09c77612881e0040d13af8ccdae79867/299-393_489-525; #=GS A0A131HSS5/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS A0A131HSS5/299-393_489-525 DR EC; 2.7.13.3; #=GS A0A058YBB1/299-393_489-525 AC A0A058YBB1 #=GS A0A058YBB1/299-393_489-525 OS Bordetella bronchiseptica 99-R-0433 #=GS A0A058YBB1/299-393_489-525 DE Histidine kinase #=GS A0A058YBB1/299-393_489-525 DR GENE3D; 168b36d8c432fbdbc085a553ef890d94/299-393_489-525; #=GS A0A058YBB1/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella bronchiseptica; #=GS A0A058YBB1/299-393_489-525 DR EC; 2.7.13.3; #=GS P40330/299-393_489-525 AC P40330 #=GS P40330/299-393_489-525 OS Bordetella parapertussis 12822 #=GS P40330/299-393_489-525 DE Virulence sensor protein BvgS #=GS P40330/299-393_489-525 DR GENE3D; 19195a843a638f406c494e14a40de15b/299-393_489-525; #=GS P40330/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella parapertussis; #=GS P40330/299-393_489-525 DR EC; 2.7.13.3; #=GS A0A0E7UFC3/299-393_489-525 AC A0A0E7UFC3 #=GS A0A0E7UFC3/299-393_489-525 OS Bordetella pertussis #=GS A0A0E7UFC3/299-393_489-525 DE Histidine kinase #=GS A0A0E7UFC3/299-393_489-525 DR GENE3D; 34362ed62da919eccebb9176e6340d2a/299-393_489-525; #=GS A0A0E7UFC3/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS A0A0E7UFC3/299-393_489-525 DR EC; 2.7.13.3; #=GS A0A0A0XHJ9/299-393_489-525 AC A0A0A0XHJ9 #=GS A0A0A0XHJ9/299-393_489-525 OS Bordetella pertussis B1920 #=GS A0A0A0XHJ9/299-393_489-525 DE Histidine kinase #=GS A0A0A0XHJ9/299-393_489-525 DR GENE3D; 34362ed62da919eccebb9176e6340d2a/299-393_489-525; #=GS A0A0A0XHJ9/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS A0A0A0XHJ9/299-393_489-525 DR EC; 2.7.13.3; #=GS A0A0T7R5K2/40-134_230-266 AC A0A0T7R5K2 #=GS A0A0T7R5K2/40-134_230-266 OS Bordetella pertussis #=GS A0A0T7R5K2/40-134_230-266 DE Histidine kinase #=GS A0A0T7R5K2/40-134_230-266 DR GENE3D; 7ebae0e00db631a4e1c7b8b8c19eeabf/40-134_230-266; #=GS A0A0T7R5K2/40-134_230-266 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS A0A0T7R5K2/40-134_230-266 DR EC; 2.7.13.3; #=GS A0A0T7CP21/299-393_489-525 AC A0A0T7CP21 #=GS A0A0T7CP21/299-393_489-525 OS Bordetella pertussis 18323 #=GS A0A0T7CP21/299-393_489-525 DE Histidine kinase #=GS A0A0T7CP21/299-393_489-525 DR GENE3D; 897369aeb95ae33a508d822490d8706e/299-393_489-525; #=GS A0A0T7CP21/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS A0A0T7CP21/299-393_489-525 DR EC; 2.7.13.3; #=GS K0MJS2/299-393_489-525 AC K0MJS2 #=GS K0MJS2/299-393_489-525 OS Bordetella parapertussis Bpp5 #=GS K0MJS2/299-393_489-525 DE Histidine kinase #=GS K0MJS2/299-393_489-525 DR GENE3D; 8bc29fb28f726710fc1601b59ef13ede/299-393_489-525; #=GS K0MJS2/299-393_489-525 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella parapertussis; #=GS K0MJS2/299-393_489-525 DR EC; 2.7.13.3; #=GS A0A063USW0/276-370_466-502 AC A0A063USW0 #=GS A0A063USW0/276-370_466-502 OS Bordetella bronchiseptica OSU553 #=GS A0A063USW0/276-370_466-502 DE Histidine kinase #=GS A0A063USW0/276-370_466-502 DR GENE3D; 9e3095416bd1f6ba0f9c80734538b42d/276-370_466-502; #=GS A0A063USW0/276-370_466-502 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella bronchiseptica; #=GS A0A063USW0/276-370_466-502 DR EC; 2.7.13.3; #=GS A0A1M9K4I0/299-393_489-525 AC A0A1M9K4I0 #=GS A0A1M9K4I0/299-393_489-525 OS Mycobacterium abscessus subsp. abscessus #=GS A0A1M9K4I0/299-393_489-525 DE His Kinase A (Phosphoacceptor) domain protein #=GS A0A1M9K4I0/299-393_489-525 DR GENE3D; b694475c19ba8cb35182889c7b287306/299-393_489-525; #=GS A0A1M9K4I0/299-393_489-525 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium chelonae group; Mycobacterium abscessus subgroup; Mycobacterium abscessus; Mycobacterium abscessus subsp. abscessus; #=GS A0A1M9K4I0/299-393_489-525 DR EC; 2.7.13.3; #=GS A0A0N2ILN3/276-370_466-502 AC A0A0N2ILN3 #=GS A0A0N2ILN3/276-370_466-502 OS Bordetella pertussis H921 #=GS A0A0N2ILN3/276-370_466-502 DE Histidine kinase #=GS A0A0N2ILN3/276-370_466-502 DR GENE3D; ff5144323ae7de7df75c47e3b08aa24d/276-370_466-502; #=GS A0A0N2ILN3/276-370_466-502 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS A0A0N2ILN3/276-370_466-502 DR EC; 2.7.13.3; #=GS A1B6D3/23-108_233-258 AC A1B6D3 #=GS A1B6D3/23-108_233-258 OS Paracoccus denitrificans PD1222 #=GS A1B6D3/23-108_233-258 DE Amino acid ABC transporter substrate-binding protein, PAAT family #=GS A1B6D3/23-108_233-258 DR GENE3D; e63d6985100ee2837e64f24e5bf778ab/23-108_233-258; #=GS A1B6D3/23-108_233-258 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus; Paracoccus denitrificans; #=GS A0A171K2S0/280-374_470-506 AC A0A171K2S0 #=GS A0A171K2S0/280-374_470-506 OS Bordetella pertussis 2356847 #=GS A0A171K2S0/280-374_470-506 DE Putative virulence sensor protein BvgS #=GS A0A171K2S0/280-374_470-506 DR GENE3D; ff8d20e7fac97f76a05d0734c2f3c6f4/280-374_470-506; #=GS A0A171K2S0/280-374_470-506 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis; #=GS P29900/23-108_233-258 AC P29900 #=GS P29900/23-108_233-258 OS Paracoccus denitrificans #=GS P29900/23-108_233-258 DE Protein MoxJ #=GS P29900/23-108_233-258 DR GENE3D; e63d6985100ee2837e64f24e5bf778ab/23-108_233-258; #=GS P29900/23-108_233-258 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus; Paracoccus denitrificans; #=GF TC 254.4 5.4E-81 #=GF SQ 23 3mpkA01/17-118_214-251 ---------HPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRWR--- 3mplA01/17-118_214-251 ---------HPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALEVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRWR--- 4q0cA03/316-426_522-562 GSSISLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRWRGSD 4q0cB03/316-426_522-562 GSSISLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRWRGSD 4q0cC03/316-426_522-562 GSSISLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRWRGSD 4q0cD03/316-426_522-562 GSSISLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRWRGSD P16575/299-393_489-525 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- A0A0C6P0E1/299-393_489-525 ----------------EQQWMANHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFQIIGVDTVEELIAKLRSG-EADMAGALFVNAARESVLSFSRPYVRNAEIALATARGQTELISILNKALYSISNDELASIVSRW---- P26762/299-393_489-525 ----------------EQQWMANHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFQIIGVDTVEELIAKLRSG-EADMAGALFVNAARESVLSFSRPYVRNAEIALATARGQTELISILNKALYSISNDELASIVSRW---- A0A131HSS5/299-393_489-525 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- A0A058YBB1/299-393_489-525 ----------------EQQWMERHPVVKVAVLNLFAPFTLFRADEQFGGISAAVLQLLQLRTGLEFEIIGVDTVEELMAKLRSG-EADMAGALFVNTARESFLSFSRPYVRNAEIALATARGQTELMSILNKALYSISNDELASIVSRW---- P40330/299-393_489-525 ----------------EQQWMANHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFQIIGVDTVEELIAKLRSG-EADMAGALFVNAARESVLSFSRPYVRNAEIALATARGQTELISILNKALYSISNDELASIVSRW---- A0A0E7UFC3/299-393_489-525 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- A0A0A0XHJ9/299-393_489-525 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- A0A0T7R5K2/40-134_230-266 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- A0A0T7CP21/299-393_489-525 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- K0MJS2/299-393_489-525 ----------------EQQWMTNHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFQIIGVDTVEELIAKLRSG-EADMAGALFVNAARESVLSFSRPYVRNAEIALATARGQTELISILNKALYSISNDELASIVSRW---- A0A063USW0/276-370_466-502 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- A0A1M9K4I0/299-393_489-525 ----------------EQQWMANHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFQIIGVDTVEELIAKLRSG-EADMAGALFVNAARESVLSFSRPYVRNAEIALATARGQTELISILNKALYSISNDELASIVSRW---- A0A0N2ILN3/276-370_466-502 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- A1B6D3/23-108_233-258 --------------------LADTTNLRVCASTKDAPF----SDAQGAGFENKIAQVLADEMGATLDLVMLE--KDAIYLVRDGIEKDLCDVLVGVDAGDERLLTTRPYYRSYSQSVGVSKTHPELLGPIEQALQSGK--------------- A0A171K2S0/280-374_470-506 ----------------EQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSG-EADMAGALFVNSARESFLSFSRPYVRNAEIALATTRGQTELMSILNKALYSISNDELASIISRW---- P29900/23-108_233-258 --------------------LADTTNLRVCASTKDAPF----SDAQGAGFENKIAQVLADEMGATLDLVMLE--KDAIYLVRDGIEKDLCDVLVGVDAGDERLLTTRPYYRSYSQSVGVSKTHPELLGPIEQALQSGK--------------- #=GC scorecons 000000000000000044447875656795656549994444695946965657596955669556667567446758556969095975669555496754955699959655566665767699665666995955444444434440000 #=GC scorecons_70 ____________________***_*_***_*_*__***_____*_*_**____*_***____*__*_**_**__**_*__**_*_*_**_***____*_*__*__****_**___***__*_****_*_*****_*_________________ #=GC scorecons_80 _____________________**____**______***_____*_*__*____*_*_*____*_____*__*___*_*___*_*_*_*____*____*_*__*___***_*_________*___**______**_*_________________ #=GC scorecons_90 _____________________*______*______***_____*_*__*______*_*____*______________*___*_*_*_*____*____*____*___***_*_____________**______**_*_________________ //