# STOCKHOLM 1.0 #=GF ID 3.40.190.10/FF/153449 #=GF DE LysR family transcriptional regulator #=GF AC 3.40.190.10/FF/153449 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 19.107 #=GS P77171/176-277 AC P77171 #=GS P77171/176-277 OS Escherichia coli K-12 #=GS P77171/176-277 DE Uncharacterized HTH-type transcriptional regulator YdcI #=GS P77171/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS P77171/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS P77171/176-277 DR GO; GO:0003677; GO:0006351; GO:0043565; GO:0045892; #=GS Q32FN0/223-318 AC Q32FN0 #=GS Q32FN0/223-318 OS Shigella dysenteriae Sd197 #=GS Q32FN0/223-318 DE Putative transcriptional regulator LYSR-type #=GS Q32FN0/223-318 DR GENE3D; aa33111889f1a1f861f4a9ae041bf923/223-318; #=GS Q32FN0/223-318 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; #=GS A0A077ZMF7/176-277 AC A0A077ZMF7 #=GS A0A077ZMF7/176-277 OS Trichuris trichiura #=GS A0A077ZMF7/176-277 DE LysR substrate and HTH 1 domain containing protei n #=GS A0A077ZMF7/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A077ZMF7/176-277 DR ORG; Eukaryota; Metazoa; Nematoda; Enoplea; Dorylaimia; Trichocephalida; Trichuridae; Trichuris; Trichuris trichiura; #=GS A0A0L0H483/176-277 AC A0A0L0H483 #=GS A0A0L0H483/176-277 OS Trabulsiella odontotermitis #=GS A0A0L0H483/176-277 DE LysR family transcriptional regulator #=GS A0A0L0H483/176-277 DR GENE3D; 4358777a8eef97f79536e4d74cf1c63e/176-277; #=GS A0A0L0H483/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Trabulsiella; Trabulsiella odontotermitis; #=GS H4J7R9/149-250 AC H4J7R9 #=GS H4J7R9/149-250 OS Escherichia coli DEC1D #=GS H4J7R9/149-250 DE Bacterial regulatory helix-turn-helix, lysR family protein #=GS H4J7R9/149-250 DR GENE3D; 43f307f402a073610345809580cc7a31/149-250; #=GS H4J7R9/149-250 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS H4KGF1/149-250 AC H4KGF1 #=GS H4KGF1/149-250 OS Escherichia coli DEC2C #=GS H4KGF1/149-250 DE Bacterial regulatory helix-turn-helix, lysR family protein #=GS H4KGF1/149-250 DR GENE3D; 43f307f402a073610345809580cc7a31/149-250; #=GS H4KGF1/149-250 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS D8AS91/176-277 AC D8AS91 #=GS D8AS91/176-277 OS Escherichia coli MS 116-1 #=GS D8AS91/176-277 DE LysR substrate binding domain protein #=GS D8AS91/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS D8AS91/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS D8AWR9/176-277 AC D8AWR9 #=GS D8AWR9/176-277 OS Escherichia coli MS 175-1 #=GS D8AWR9/176-277 DE LysR substrate binding domain protein #=GS D8AWR9/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS D8AWR9/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A069XEE1/176-277 AC A0A069XEE1 #=GS A0A069XEE1/176-277 OS Escherichia coli 3-373-03_S4_C2 #=GS A0A069XEE1/176-277 DE Bacterial regulatory helix-turn-helix, lysR family protein #=GS A0A069XEE1/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A069XEE1/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A0P8CTC8/176-277 AC A0A0P8CTC8 #=GS A0A0P8CTC8/176-277 OS Escherichia coli TW10598 #=GS A0A0P8CTC8/176-277 DE Putative HTH-type transcriptional regulator YdcI #=GS A0A0P8CTC8/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A0P8CTC8/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS E3PLS3/176-277 AC E3PLS3 #=GS E3PLS3/176-277 OS Escherichia coli ETEC H10407 #=GS E3PLS3/176-277 DE LysR-family transcriptional regulator #=GS E3PLS3/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS E3PLS3/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS E1HRB7/176-277 AC E1HRB7 #=GS E1HRB7/176-277 OS Escherichia coli MS 146-1 #=GS E1HRB7/176-277 DE LysR substrate binding domain protein #=GS E1HRB7/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS E1HRB7/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A0M7MUI2/176-277 AC A0A0M7MUI2 #=GS A0A0M7MUI2/176-277 OS Achromobacter sp. #=GS A0A0M7MUI2/176-277 DE Cat operon transcriptional regulator #=GS A0A0M7MUI2/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A0M7MUI2/176-277 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; Achromobacter sp.; #=GS M9FK33/176-277 AC M9FK33 #=GS M9FK33/176-277 OS Escherichia coli 174750 #=GS M9FK33/176-277 DE Bacterial regulatory helix-turn-helix, lysR family protein #=GS M9FK33/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS M9FK33/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS G0FF90/176-277 AC G0FF90 #=GS G0FF90/176-277 OS Escherichia coli UMNF18 #=GS G0FF90/176-277 DE Uncharacterized HTH-type transcriptional regulator ydcI #=GS G0FF90/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS G0FF90/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS T9DDC9/176-277 AC T9DDC9 #=GS T9DDC9/176-277 OS Escherichia coli UMEA 3212-1 #=GS T9DDC9/176-277 DE Transcriptional regulator #=GS T9DDC9/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS T9DDC9/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A024L3X5/176-277 AC A0A024L3X5 #=GS A0A024L3X5/176-277 OS Escherichia coli #=GS A0A024L3X5/176-277 DE LysR family transcriptional regulator #=GS A0A024L3X5/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A024L3X5/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A142UYD4/176-277 AC A0A142UYD4 #=GS A0A142UYD4/176-277 OS Escherichia coli str. Sanji #=GS A0A142UYD4/176-277 DE LysR family transcriptional regulator #=GS A0A142UYD4/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A142UYD4/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS V1A3S5/176-277 AC V1A3S5 #=GS V1A3S5/176-277 OS Escherichia coli 908658 #=GS V1A3S5/176-277 DE LysR substrate binding domain protein #=GS V1A3S5/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS V1A3S5/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A142H2N4/176-277 AC A0A142H2N4 #=GS A0A142H2N4/176-277 OS Shigella sp. PAMC 28760 #=GS A0A142H2N4/176-277 DE LysR family transcriptional regulator #=GS A0A142H2N4/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A142H2N4/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sp. PAMC 28760; #=GS A0A125X3Y4/176-277 AC A0A125X3Y4 #=GS A0A125X3Y4/176-277 OS Escherichia coli 1-110-08_S3_C1 #=GS A0A125X3Y4/176-277 DE Bacterial regulatory helix-turn-helix, lysR family protein #=GS A0A125X3Y4/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A125X3Y4/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A0E1M1J6/176-277 AC A0A0E1M1J6 #=GS A0A0E1M1J6/176-277 OS Escherichia coli 1303 #=GS A0A0E1M1J6/176-277 DE Putative DNA-binding transcriptional regulator #=GS A0A0E1M1J6/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A0E1M1J6/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A140N9D7/176-277 AC A0A140N9D7 #=GS A0A140N9D7/176-277 OS Escherichia coli BL21(DE3) #=GS A0A140N9D7/176-277 DE Transcriptional regulator, LysR family #=GS A0A140N9D7/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A140N9D7/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS H9USR6/176-277 AC H9USR6 #=GS H9USR6/176-277 OS Escherichia coli P12b #=GS H9USR6/176-277 DE Putative transcriptional regulator LYSR-type #=GS H9USR6/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS H9USR6/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A0E0TXV5/176-277 AC A0A0E0TXV5 #=GS A0A0E0TXV5/176-277 OS Escherichia coli UMNK88 #=GS A0A0E0TXV5/176-277 DE Uncharacterized protein #=GS A0A0E0TXV5/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A0E0TXV5/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A1J0HAW2/176-277 AC A0A1J0HAW2 #=GS A0A1J0HAW2/176-277 OS Escherichia coli str. K-12 substr. W3110 #=GS A0A1J0HAW2/176-277 DE LysR family transcriptional regulator #=GS A0A1J0HAW2/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A1J0HAW2/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A070SV75/176-277 AC A0A070SV75 #=GS A0A070SV75/176-277 OS Escherichia coli 2-210-07_S3_C3 #=GS A0A070SV75/176-277 DE Bacterial regulatory helix-turn-helix, lysR family protein #=GS A0A070SV75/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS A0A070SV75/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS L3KS84/176-277 AC L3KS84 #=GS L3KS84/176-277 OS Escherichia coli KTE51 #=GS L3KS84/176-277 DE Transcriptional regulator #=GS L3KS84/176-277 DR GENE3D; fc2a7101356ddd3241030d783952b9ba/176-277; #=GS L3KS84/176-277 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A090NM75/223-318 AC A0A090NM75 #=GS A0A090NM75/223-318 OS Shigella dysenteriae WRSd3 #=GS A0A090NM75/223-318 DE Transcriptional regulator, LysR family protein #=GS A0A090NM75/223-318 DR GENE3D; aa33111889f1a1f861f4a9ae041bf923/223-318; #=GS A0A090NM75/223-318 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; #=GF TC 210.2 5.3E-67 #=GF SQ 29 P77171/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG Q32FN0/223-318 SLKLVVCPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQ------GCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A077ZMF7/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A0L0H483/176-277 SLKLVVRPHHPLLQENVTLSRVLEWPVVVSPKGTTPRQNAEAMLQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHGTLTALPVPTYGVG H4J7R9/149-250 SLKLVVRPNHPLLQENVTLNRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG H4KGF1/149-250 SLKLVVRPNHPLLQENVTLNRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG D8AS91/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG D8AWR9/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A069XEE1/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A0P8CTC8/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG E3PLS3/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG E1HRB7/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A0M7MUI2/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG M9FK33/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG G0FF90/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG T9DDC9/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A024L3X5/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A142UYD4/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG V1A3S5/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A142H2N4/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A125X3Y4/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A0E1M1J6/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A140N9D7/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG H9USR6/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A0E0TXV5/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A1J0HAW2/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A070SV75/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG L3KS84/176-277 SLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG A0A090NM75/223-318 SLKLVVCPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQ------GCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAG #=GC scorecons 999999597999999999989999999999979979997779779994444449999999999999999999999999999999999979979999977979 #=GC scorecons_70 ******_****************************************______************************************************* #=GC scorecons_80 ******_****************************************______**************************************_*****_**** #=GC scorecons_90 ******_*_**********************_**_***___*__***______***********************************_**_*****__*_* //