# STOCKHOLM 1.0 #=GF ID 3.40.1370.10/FF/4066 #=GF DE 50S ribosomal protein L4 #=GF AC 3.40.1370.10/FF/4066 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 89.981 #=GS A0A0H4TAD0/1-76 AC A0A0H4TAD0 #=GS A0A0H4TAD0/1-76 OS uncultured gamma proteobacterium Rifle_16ft_4_minimus_8572 #=GS A0A0H4TAD0/1-76 DE 50S ribosomal protein L4, large subunit ribosomal protein L4 #=GS A0A0H4TAD0/1-76 DR GENE3D; 02ff8ad2e385bdfd9972719cb29cba48/1-76; #=GS A0A0H4TAD0/1-76 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; uncultured gamma proteobacterium Rifle_16ft_4_minimus_8572; #=GS B8KWG3/6-85 AC B8KWG3 #=GS B8KWG3/6-85 OS Luminiphilus syltensis NOR5-1B #=GS B8KWG3/6-85 DE Ribosomal protein L4/L1e #=GS B8KWG3/6-85 DR GENE3D; 1225e363f001acc2ef955bfbfad6745b/6-85; #=GS B8KWG3/6-85 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Luminiphilus; Luminiphilus syltensis; #=GS A0A1M3QNP4/7-201 AC A0A1M3QNP4 #=GS A0A1M3QNP4/7-201 OS Xanthomonadales bacterium 66-474 #=GS A0A1M3QNP4/7-201 DE 50S ribosomal protein L4 #=GS A0A1M3QNP4/7-201 DR GENE3D; 1b96fc0dcfcac515a52e2fdf4ab8ae71/7-201; #=GS A0A1M3QNP4/7-201 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadales bacterium 66-474; #=GS A0A1E4NNZ5/7-201 AC A0A1E4NNZ5 #=GS A0A1E4NNZ5/7-201 OS Rhodanobacter sp. SCN 66-43 #=GS A0A1E4NNZ5/7-201 DE 50S ribosomal protein L4 #=GS A0A1E4NNZ5/7-201 DR GENE3D; 1b96fc0dcfcac515a52e2fdf4ab8ae71/7-201; #=GS A0A1E4NNZ5/7-201 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Rhodanobacter; Rhodanobacter sp. SCN 66-43; #=GS A0A0F3K5R6/7-200 AC A0A0F3K5R6 #=GS A0A0F3K5R6/7-200 OS Luteibacter yeojuensis #=GS A0A0F3K5R6/7-200 DE 50S ribosomal protein L4 #=GS A0A0F3K5R6/7-200 DR GENE3D; 1f0457313ffbcef8b2d0c276a74aaeb4/7-200; #=GS A0A0F3K5R6/7-200 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Luteibacter; Luteibacter yeojuensis; #=GS A0A090TD00/1-53 AC A0A090TD00 #=GS A0A090TD00/1-53 OS Vibrio maritimus #=GS A0A090TD00/1-53 DE LSU ribosomal protein L4p #=GS A0A090TD00/1-53 DR GENE3D; 2d1ab0cdd28460449958ef7f556b1d84/1-53; #=GS A0A090TD00/1-53 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio maritimus; #=GS A0A0G9HZJ8/7-200 AC A0A0G9HZJ8 #=GS A0A0G9HZJ8/7-200 OS Xanthomonas hyacinthi DSM 19077 #=GS A0A0G9HZJ8/7-200 DE 50S ribosomal protein L4 #=GS A0A0G9HZJ8/7-200 DR GENE3D; 337c438bd1bd43b37cbb3a5d08fb1878/7-200; #=GS A0A0G9HZJ8/7-200 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas hyacinthi; #=GS A0A0G9HD50/7-200 AC A0A0G9HD50 #=GS A0A0G9HD50/7-200 OS Luteibacter rhizovicinus DSM 16549 #=GS A0A0G9HD50/7-200 DE 50S ribosomal protein L4 #=GS A0A0G9HD50/7-200 DR GENE3D; 337c438bd1bd43b37cbb3a5d08fb1878/7-200; #=GS A0A0G9HD50/7-200 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Luteibacter; Luteibacter rhizovicinus; #=GS A0A074TNG5/1-52 AC A0A074TNG5 #=GS A0A074TNG5/1-52 OS Microbacterium sp. SUBG005 #=GS A0A074TNG5/1-52 DE 50S ribosomal protein L4 #=GS A0A074TNG5/1-52 DR GENE3D; 3f3d0cbe84749212e19329618c63f55c/1-52; #=GS A0A074TNG5/1-52 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium; Microbacterium sp. SUBG005; #=GS A0A1E4Q4W8/8-200 AC A0A1E4Q4W8 #=GS A0A1E4Q4W8/8-200 OS Rhodanobacter sp. SCN 68-63 #=GS A0A1E4Q4W8/8-200 DE 50S ribosomal protein L4 #=GS A0A1E4Q4W8/8-200 DR GENE3D; 578d5db1485d7075447bf1baf8737e7a/8-200; #=GS A0A1E4Q4W8/8-200 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Rhodanobacter; Rhodanobacter sp. SCN 68-63; #=GS A0A1G0E4M4/1-49 AC A0A1G0E4M4 #=GS A0A1G0E4M4/1-49 OS Gammaproteobacteria bacterium RBG_16_37_9 #=GS A0A1G0E4M4/1-49 DE 50S ribosomal protein L4 #=GS A0A1G0E4M4/1-49 DR GENE3D; cfee8f98b2542cbbf176aa683b7e4ee3/1-49; #=GS A0A1G0E4M4/1-49 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria bacterium RBG_16_37_9; #=GS A0A090AL83/1-165 AC A0A090AL83 #=GS A0A090AL83/1-165 OS Candidatus Tachikawaea gelatinosa #=GS A0A090AL83/1-165 DE 50S ribosomal protein L4 #=GS A0A090AL83/1-165 DR GENE3D; d2a44578f60496ee36ec80c5516c5ba6/1-165; #=GS A0A090AL83/1-165 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Candidatus Tachikawaea; Candidatus Tachikawaea gelatinosa; #=GS A0A176S2L4/1-67 AC A0A176S2L4 #=GS A0A176S2L4/1-67 OS Candidatus Thiomargarita nelsonii #=GS A0A176S2L4/1-67 DE 50S ribosomal protein L4 #=GS A0A176S2L4/1-67 DR GENE3D; d690fa91283708e2629766072e68c78a/1-67; #=GS A0A176S2L4/1-67 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita; Candidatus Thiomargarita nelsonii; #=GS K2BHG2/1-154 AC K2BHG2 #=GS K2BHG2/1-154 OS groundwater metagenome #=GS K2BHG2/1-154 DE 50S ribosomal protein L4 #=GS K2BHG2/1-154 DR GENE3D; db2f8de73480be23e2fca5e42c8437f4/1-154; #=GS K2BHG2/1-154 DR ORG; groundwater metagenome; #=GS A0A0H4TRH8/1-135 AC A0A0H4TRH8 #=GS A0A0H4TRH8/1-135 OS uncultured beta proteobacterium Rifle_16ft_4_minimus_37916 #=GS A0A0H4TRH8/1-135 DE 50S ribosomal protein L4, large subunit ribosomal protein L4 #=GS A0A0H4TRH8/1-135 DR GENE3D; e78aaed3f3f76007285d003780cc8ce2/1-135; #=GS A0A0H4TRH8/1-135 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; uncultured beta proteobacterium Rifle_16ft_4_minimus_37916; #=GS A0A0H4T668/1-53 AC A0A0H4T668 #=GS A0A0H4T668/1-53 OS uncultured proteobacterium Rifle_16ft_4_minimus_30456 #=GS A0A0H4T668/1-53 DE 50S ribosomal protein L4, large subunit ribosomal protein L4 #=GS A0A0H4T668/1-53 DR GENE3D; ed76f980d28171ba76423f946d236e31/1-53; #=GS A0A0H4T668/1-53 DR ORG; Bacteria; Proteobacteria; uncultured proteobacterium Rifle_16ft_4_minimus_30456; #=GS A0A1J5P4D2/1-103 AC A0A1J5P4D2 #=GS A0A1J5P4D2/1-103 OS mine drainage metagenome #=GS A0A1J5P4D2/1-103 DE 50S ribosomal protein L4 #=GS A0A1J5P4D2/1-103 DR GENE3D; f3717d151047d090998dac1ad7a0342a/1-103; #=GS A0A1J5P4D2/1-103 DR ORG; mine drainage metagenome; #=GS C8N6G3/1-103 AC C8N6G3 #=GS C8N6G3/1-103 OS Cardiobacterium hominis ATCC 15826 #=GS C8N6G3/1-103 DE 50S ribosomal protein L4 family protein #=GS C8N6G3/1-103 DR GENE3D; f72f9fdd2dc5d93e1d1b13c7314ccc90/1-103; #=GS C8N6G3/1-103 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium; Cardiobacterium hominis; #=GS G9ZCS6/1-162 AC G9ZCS6 #=GS G9ZCS6/1-162 OS Cardiobacterium valvarum F0432 #=GS G9ZCS6/1-162 DE 50S ribosomal protein L4 #=GS G9ZCS6/1-162 DR GENE3D; fb0ca8e0ff62a853ec9a7128684fd405/1-162; #=GS G9ZCS6/1-162 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium; Cardiobacterium valvarum; #=GF TC 90.3 2.2E-29 #=GF SQ 19 A0A0H4TAD0/1-76 ----------------------------------------------------------------------------------------------------------------------TVTSPKTKDLLAQLQGLNATR----ALIVTDSLDENLYLAARNLPH-VEVIDTQAIDPVSLISYEKVIMSVQAAKKLEVEL-- B8KWG3/6-85 ------------------------------------------------------------------------------------------------------------------XXXXDLEQPKTKLLAEQLKGFGLEN----VLIISSEVDKNLYLASRNLHR-VDVSDVEGVNPVSLVAFDKVLVTVDAVKKFEEAL-- A0A1M3QNP4/7-201 GAKPVQVSEAIFGAAFRQDLVHQVVVAYRNAGRAGTKAQLNHTRMSGTTKKFKKQKGGG-ARHGDYRAPIFVGGARAFA-AQPRDFAQKVNRKMYRGALCSMLAELNRQGRLKVVPEFAVDAAKTKSLIGKLGEIEAVG---RTLIVTPAVDEKLYLAARNNPNIIDVIDVDGINPVALAAADHVVITVDAVKKVEEWLA- A0A1E4NNZ5/7-201 GAKPVQVSEAIFGAAFRQDLVHQVVVAYRNAGRAGTKAQLNHTRMSGTTKKFKKQKGGG-ARHGDYRAPIFVGGARAFA-AQPRDFAQKVNRKMYRGALCSMLAELNRQGRLKVVPEFAVDAAKTKSLIGKLGEIEAVG---RTLIVTPAVDEKLYLAARNNPNIIDVIDVDGINPVALAAADHVVITVDAVKKVEEWLA- A0A0F3K5R6/7-200 GAKSLTVSDEVFGGEYKKALVHQVVTAYQAGGRAGTKAQLSRGELSGTTKKFKKQKGGG-ARHGDYRAPIFVGGGVTFA-AKPRSFEQKVNRKAYRVAIRSIIAELNRQDRLKVVSELSIEKASTKAMIAKLAELEVKG---RVLLVSEDATEALYLSARNIPY-IHVVDVLALNPVSLVGSDFVVMTVDAVKKVEEWLA- A0A090TD00/1-53 --------------------------------------------------------------------------------------------------------------------------------------------------MTSEVDENLFLAARNLYK-VDARDVAGIDPVSLIAFDKVVITAAAVKQVEEMLA- A0A0G9HZJ8/7-200 GAKALTVSDEVFGGEYKKALVHQVVTAYQAAGRAGTKAQLSRGQMSGTTKKFKKQKGGG-ARHGDYRAPIFVGGGVTFA-AKPRSFEQKVNRKAYRVAIRSIVAELTRQGRLKVVTELSIDAPSTKGMIAKLAELEVKG---RVLLVSEDATEALYLSARNIPY-IHVVDVLALNPVSLVGSDFVVMTVDAVKKVEEWLA- A0A0G9HD50/7-200 GAKALTVSDEVFGGEYKKALVHQVVTAYQAAGRAGTKAQLSRGQMSGTTKKFKKQKGGG-ARHGDYRAPIFVGGGVTFA-AKPRSFEQKVNRKAYRVAIRSIVAELTRQGRLKVVTELSIDAPSTKGMIAKLAELEVKG---RVLLVSEDATEALYLSARNIPY-IHVVDVLALNPVSLVGSDFVVMTVDAVKKVEEWLA- A0A074TNG5/1-52 ---------------------------------------------------------------------------------------------------------------------------------------------------TGELDENLFLAARNLHK-VDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA- A0A1E4Q4W8/8-200 -AKPLSVSDEVFGGEYKQALVHQVVVAYQAGGRAGTKAQLSRGEMSGTTKKFKKQKGGG-ARHGDYRAPIFVGGGVTFA-AKPRSFEQKVNRKSYRVAIRSILAELNRADRLKVVEGFGIDSPKTSAMVAKLAELQVSG---RVLLVSEDATESLFLAARNIPY-VHVVDVLALNPVSLVGSDYVVMTVDAVKKIEEWLA- A0A1G0E4M4/1-49 ------------------------------------------------------------------------------------------------------------------------------------------------------IDTNLYLASRNVEK-IDVCGVSDINPVNLISFDKVLFTAAALKKVEEKFS- A0A090AL83/1-165 ------------------------------MNRQGTSAQKNRSEVKGTSKKPWKQKGSGRARAGSFQSPIWRSGGVTFA-GKTQDYTQKINKKMYRGAIKSIFSELIRKDRLIIFEKFFIEQPKSKLLIKKLSKIQLKE----AFIITHQTEKNLLLAARNLYK-IKICHIKNVDPVSLITFKKTIITSMAMKKLEEMLNV A0A176S2L4/1-67 --------------------------------------------------------------------------------------------------------------------------------MAQLKALELNN----VLILTEEQDKNLYLAARNLHQ-VNVSDAMAVDPVNLIKHEKVLITVPALKKIEERLA- K2BHG2/1-154 -----------------------------------------RSEVRGGGAKPFRQKGTGRARAGTIRSPLWRKGGVIFA-AKPRSYEQKVNKKMYRGALRSIFSELVRLERFVVVDSFQVETRKTKDLLNKLNELKLDK---GVLIITEAVDENLYLATRNLVD-VEVRDVAAIDPVCLVGAEKVLVTVAALKQIEELLK- A0A0H4TRH8/1-135 ----------------------------------------------------------------MASSPLWRGGGKIFPNTGEENYTQKINRKMYRAGFAAILSKLVSENRLVVVDDLTVDSPKTKQLAQKIKGMGVDTNQFRLLIITDSIDENLYLSSRNLAN-VLVLEANQADPISLVRFPNVMVTRNAVAKMEEMFA- A0A0H4T668/1-53 --------------------------------------------------------------------------------------------------------------------------------------------------MTDAPNNNLVLAARNLPG-VDVRMVGAADPVSLIRHAKVILTQGAVKKFEEMLA- A0A1J5P4D2/1-103 ---------------------------------------------------------------------------------------------MYRAGLASIFSKLVSEGRLSVVDSLVVDAPKTKLLASKLKGMGFSD---RVMIVTDNLDDNLWMSSRNLPN-VLIVEPRHIDPVSMVRYGRVLMTSAAVKMVEEMLA- C8N6G3/1-103 ---------------------------------------------------------------------------------------------MYRAALRSIFSELQRQDRLCLVEELNFSSNKTKDFVSYAAEMGFGQ---DFLLITESLNENLFLASRNIPS-VVVVDVEAIDPVLLLRHEKVAIDKLAIERINEWLS- G9ZCS6/1-162 ---------------------------------MGTKAQKTRSEVSGGGRKPWKQKGSGRARAGTIRSPLWRGGGVAFA-AKPRTFMKKVNRKMYRSALRGIFSELLRQKRLHVVEDLKITSSKTKDFISNMDMLGLKN---GFLIITDSLNEHLFLASRNVPG-VGVVDVEGLTPVSLLQYEEIVVDKVAIEKINGWLS- #=GC scorecons 000000000000000000000000000000000011111001001111111001111110110111112111121112101111110121212233122122122312113212211213222344132234223221200012434543456596866995430737366245698585345485574396765773740 #=GC scorecons_70 __________________________________________________________________________________________________________________________________________________________*_**_**____*_*_*_____**_*_____*__*__*_**_**_*__ #=GC scorecons_80 __________________________________________________________________________________________________________________________________________________________*_*__**____*_*_______**_*_____*_____*_*__**_*__ #=GC scorecons_90 __________________________________________________________________________________________________________________________________________________________*_*__**______________**_*___________*__________ //