# STOCKHOLM 1.0 #=GF ID 3.30.70.330/FF/9813 #=GF DE Squid, isoform E #=GF AC 3.30.70.330/FF/9813 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 30.719 #=GS Q08473/132-246 AC Q08473 #=GS Q08473/132-246 OS Drosophila melanogaster #=GS Q08473/132-246 DE RNA-binding protein squid #=GS Q08473/132-246 DR GENE3D; 7908eecf156e2e297cc058452ea8caa9/132-246; #=GS Q08473/132-246 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS Q08473/132-246 DR GO; GO:0000184; GO:0000381; GO:0000398; GO:0000785; GO:0003729; GO:0003730; GO:0005634; GO:0005703; GO:0005737; GO:0006405; GO:0006406; GO:0007293; GO:0007297; GO:0007314; GO:0008069; GO:0008298; GO:0009953; GO:0016325; GO:0017148; GO:0019094; GO:0030720; GO:0033119; GO:0035062; GO:0045451; GO:0048477; GO:0071011; GO:0071013; #=GS A0A0B4K6U6/132-247 AC A0A0B4K6U6 #=GS A0A0B4K6U6/132-247 OS Drosophila melanogaster #=GS A0A0B4K6U6/132-247 DE Squid, isoform E #=GS A0A0B4K6U6/132-247 DR GENE3D; a6e3fd711c22e26691a388d500c71a99/132-247; #=GS A0A0B4K6U6/132-247 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS A0A0R1E3E1/132-250 AC A0A0R1E3E1 #=GS A0A0R1E3E1/132-250 OS Drosophila yakuba #=GS A0A0R1E3E1/132-250 DE Uncharacterized protein, isoform B #=GS A0A0R1E3E1/132-250 DR GENE3D; 06716aedc5025ad24b5787c663164b66/132-250; #=GS A0A0R1E3E1/132-250 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; #=GS B4HFQ8/130-246 AC B4HFQ8 #=GS B4HFQ8/130-246 OS Drosophila sechellia #=GS B4HFQ8/130-246 DE GM25920 #=GS B4HFQ8/130-246 DR GENE3D; 290c89f4384f0fda8c7aa71ff69585fb/130-246; #=GS B4HFQ8/130-246 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; #=GS Q297Q0/127-249 AC Q297Q0 #=GS Q297Q0/127-249 OS Drosophila pseudoobscura pseudoobscura #=GS Q297Q0/127-249 DE Uncharacterized protein, isoform C #=GS Q297Q0/127-249 DR GENE3D; 2ad4fc3f94779173dc2f511dbe08f905/127-249; #=GS Q297Q0/127-249 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; #=GS B3LXA2/131-248 AC B3LXA2 #=GS B3LXA2/131-248 OS Drosophila ananassae #=GS B3LXA2/131-248 DE Uncharacterized protein, isoform A #=GS B3LXA2/131-248 DR GENE3D; 59435c8c1f6aee84024661c527a12f75/131-248; #=GS B3LXA2/131-248 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; #=GS I5AP32/127-248 AC I5AP32 #=GS I5AP32/127-248 OS Drosophila pseudoobscura pseudoobscura #=GS I5AP32/127-248 DE Uncharacterized protein, isoform B #=GS I5AP32/127-248 DR GENE3D; 600201f2073fcd430db5f4dd7e19b0f8/127-248; #=GS I5AP32/127-248 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; #=GS A0A0N8P195/131-248 AC A0A0N8P195 #=GS A0A0N8P195/131-248 OS Drosophila ananassae #=GS A0A0N8P195/131-248 DE Uncharacterized protein, isoform B #=GS A0A0N8P195/131-248 DR GENE3D; 6506c92f14da74d640e81a1e21d9f985/131-248; #=GS A0A0N8P195/131-248 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; #=GS B4KA59/133-250 AC B4KA59 #=GS B4KA59/133-250 OS Drosophila mojavensis #=GS B4KA59/133-250 DE Uncharacterized protein, isoform A #=GS B4KA59/133-250 DR GENE3D; 70d1c342509c011eb353f0f5aa979182/133-250; #=GS B4KA59/133-250 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; repleta group; mulleri subgroup; Drosophila mojavensis; #=GS A0A0Q9XF10/129-251 AC A0A0Q9XF10 #=GS A0A0Q9XF10/129-251 OS Drosophila mojavensis #=GS A0A0Q9XF10/129-251 DE Uncharacterized protein, isoform B #=GS A0A0Q9XF10/129-251 DR GENE3D; 73d8da6ba6f73d546288549a18aa149b/129-251; #=GS A0A0Q9XF10/129-251 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; repleta group; mulleri subgroup; Drosophila mojavensis; #=GS A0A0Q9WGD6/133-250 AC A0A0Q9WGD6 #=GS A0A0Q9WGD6/133-250 OS Drosophila virilis #=GS A0A0Q9WGD6/133-250 DE Uncharacterized protein, isoform C #=GS A0A0Q9WGD6/133-250 DR GENE3D; 74e93f227e3d80a104540401fbfcdba7/133-250; #=GS A0A0Q9WGD6/133-250 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; virilis group; Drosophila virilis; #=GS B4NKF1/140-260 AC B4NKF1 #=GS B4NKF1/140-260 OS Drosophila willistoni #=GS B4NKF1/140-260 DE Uncharacterized protein, isoform A #=GS B4NKF1/140-260 DR GENE3D; 8c3b7072ac743278d771f0a79a4d124b/140-260; #=GS B4NKF1/140-260 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; willistoni group; willistoni subgroup; Drosophila willistoni; #=GS A0A0M5J9P1/394-513 AC A0A0M5J9P1 #=GS A0A0M5J9P1/394-513 OS Drosophila busckii #=GS A0A0M5J9P1/394-513 DE Sqd #=GS A0A0M5J9P1/394-513 DR GENE3D; 97824b2d01ad2dc6d7f4d16ac1d3d4cf/394-513; #=GS A0A0M5J9P1/394-513 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Dorsilopha; Drosophila busckii; #=GS B3P428/130-251 AC B3P428 #=GS B3P428/130-251 OS Drosophila erecta #=GS B3P428/130-251 DE GG17035 #=GS B3P428/130-251 DR GENE3D; 98825dfca6909f7e95c14ac11c33f48b/130-251; #=GS B3P428/130-251 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; #=GS B4M0T3/133-250 AC B4M0T3 #=GS B4M0T3/133-250 OS Drosophila virilis #=GS B4M0T3/133-250 DE Uncharacterized protein, isoform B #=GS B4M0T3/133-250 DR GENE3D; a421fa9e1e49d44aa24cfb115b82b1ce/133-250; #=GS B4M0T3/133-250 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; virilis group; Drosophila virilis; #=GS L7P541/46-159 AC L7P541 #=GS L7P541/46-159 OS Drosophila madeirensis #=GS L7P541/46-159 DE Squid #=GS L7P541/46-159 DR GENE3D; d55d8eca2f5f4492fbe6c0cfdce55c91/46-159; #=GS L7P541/46-159 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila madeirensis; #=GS L7P552/46-159 AC L7P552 #=GS L7P552/46-159 OS Drosophila subobscura #=GS L7P552/46-159 DE Squid #=GS L7P552/46-159 DR GENE3D; d55d8eca2f5f4492fbe6c0cfdce55c91/46-159; #=GS L7P552/46-159 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila subobscura; #=GS B4PQG6/132-267 AC B4PQG6 #=GS B4PQG6/132-267 OS Drosophila yakuba #=GS B4PQG6/132-267 DE Uncharacterized protein, isoform A #=GS B4PQG6/132-267 DR GENE3D; e03c8c87d436562350665076f05a8b28/132-267; #=GS B4PQG6/132-267 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; #=GS B4JIA5/132-251 AC B4JIA5 #=GS B4JIA5/132-251 OS Drosophila grimshawi #=GS B4JIA5/132-251 DE GH19060 #=GS B4JIA5/132-251 DR GENE3D; eeb38429185f11d6756163f17ac2f9e1/132-251; #=GS B4JIA5/132-251 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; grimshawi group; grimshawi subgroup; Drosophila grimshawi; #=GS B4R174/134-267 AC B4R174 #=GS B4R174/134-267 OS Drosophila simulans #=GS B4R174/134-267 DE GD20486 #=GS B4R174/134-267 DR GENE3D; b090d1c65d3bbc27487e64f47dd675f9/134-267; #=GS B4R174/134-267 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; #=GF TC 250.0 2.2E-78 #=GF SQ 20 Q08473/132-246 ----KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNN--------------------- A0A0B4K6U6/132-247 ----KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQ-------------------- A0A0R1E3E1/132-250 ----KARHGKIFVGGLTTEITDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDG----------------- B4HFQ8/130-246 --KAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNN--------------------- Q297Q0/127-249 PKKAKARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-GMRGGARGGMRGGRGGY-GRGAYNNQWDGQS--------------- B3LXA2/131-248 --KAKARHGKIFVGGLTTEITDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDAEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMM-GPRGGMRGGMRGGRGGF-GRGAYNNQWE------------------ I5AP32/127-248 PKKAKARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-GMRGGARGGMRGGRGGY-GRGAYNNQWDGQ---------------- A0A0N8P195/131-248 --KAKARHGKIFVGGLTTEITDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDAEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMM-GPRGGMRGGMRGGRGGF-GRGAYNNQWE------------------ B4KA59/133-250 ----KARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-AMRGGARGGMRGGRGGY-GRGGYSHQWDGQ---------------- A0A0Q9XF10/129-251 PKKAKARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-AMRGGARGGMRGGRGGY-GRGGYSHQWDGQG--------------- A0A0Q9WGD6/133-250 ----KARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-AMRGGARGGMRGGRGGY-GRGGYSHQWDGQ---------------- B4NKF1/140-260 --KAKARHGKIFVGGLTTEISDEEIRTYFSQFGTIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-GMRGGPRGGMRGGRGGY-GRGGYNNQWDGQG--------------- A0A0M5J9P1/394-513 --KAKARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-AMRGGPRGGMRGGRGGY-GRGGYSQQWDGQ---------------- B3P428/130-251 --KAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQIMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQ---------------- B4M0T3/133-250 ----KARHGKIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-AMRGGARGGMRGGRGGY-GRGGYSHQWDGQ---------------- L7P541/46-159 ----KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-GMRGGARGGMRGGRGGY-GRGGYNNQ-------------------- L7P552/46-159 ----KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKPENQMM-GMRGGARGGMRGGRGGY-GRGGYNNQ-------------------- B4PQG6/132-267 ----KARHGKIFVGGLTTEITDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAG B4JIA5/132-251 -KKAKARHGKIFVGGLTTEISDEEIKTYFSQFGTIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMM-GMRGGARGGMRGGRGGY-GRGGYSHQWDG----------------- B4R174/134-267 ------RHGKIFVGFLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAG #=GC scorecons 00117799999999799999699998999699989999999999999799999999997999999999999999699999999999999998917799959999999999819997966754320000000000000000 #=GC scorecons_70 ____*************************_********************************************_******************_*****_***********_********____________________ #=GC scorecons_80 ____****************_********_********************************************_******************__****_***********_*****__*____________________ #=GC scorecons_90 ______********_*****_********_***_*************_**********_***************_******************___***_***********_***_*_______________________ //