# STOCKHOLM 1.0
#=GF ID 3.30.70.330/FF/43844
#=GF DE FOG-1 protein
#=GF AC 3.30.70.330/FF/43844
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 55.601
#=GS 2m88A01/25-110      AC P53617
#=GS 2m88A01/25-110      OS Saccharomyces cerevisiae S288C
#=GS 2m88A01/25-110      DE Protein NRD1
#=GS 2m88A01/25-110      DR CATH; 2m88; A:24-109; 
#=GS 2m88A01/25-110      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2m88A01/25-110      DR GO; GO:0001068; GO:0003723; GO:0005515; GO:0005634; GO:0019904; GO:0030847; GO:0031124; GO:0031126; GO:0034472; GO:0035649; GO:0042780; GO:0071028; GO:0071034; GO:0071041; 
#=GS P53617/330-415      AC P53617
#=GS P53617/330-415      OS Saccharomyces cerevisiae S288C
#=GS P53617/330-415      DE Protein NRD1
#=GS P53617/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS P53617/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P53617/330-415      DR GO; GO:0001068; GO:0003723; GO:0005515; GO:0005634; GO:0019904; GO:0030847; GO:0031124; GO:0031126; GO:0034472; GO:0035649; GO:0042780; GO:0071028; GO:0071034; GO:0071041; 
#=GS G5EBS6/197-308      AC G5EBS6
#=GS G5EBS6/197-308      OS Caenorhabditis elegans
#=GS G5EBS6/197-308      DE FOG-1 protein
#=GS G5EBS6/197-308      DR GENE3D; f910d57a7560e995739ea20b6d3aa394/197-308; 
#=GS G5EBS6/197-308      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G5EBS6/197-308      DR GO; GO:0001708; GO:0003730; GO:0005737; GO:0007283; GO:0034399; 
#=GS H0GM89/330-415      AC H0GM89
#=GS H0GM89/330-415      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GM89/330-415      DE Nrd1p
#=GS H0GM89/330-415      DR GENE3D; 080511dff2e4177118c8980277dce06d/330-415; 
#=GS H0GM89/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A6ZRJ2/330-415      AC A6ZRJ2
#=GS A6ZRJ2/330-415      OS Saccharomyces cerevisiae YJM789
#=GS A6ZRJ2/330-415      DE Nuclear pre-mRNA down-regulation
#=GS A6ZRJ2/330-415      DR GENE3D; 1a5d52ced0c5514c0df30c3bb7c9bf8b/330-415; 
#=GS A6ZRJ2/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GPB0/330-415      AC C7GPB0
#=GS C7GPB0/330-415      OS Saccharomyces cerevisiae JAY291
#=GS C7GPB0/330-415      DE Nrd1p
#=GS C7GPB0/330-415      DR GENE3D; 369095b1342f9027c6c383c16e71e842/330-415; 
#=GS C7GPB0/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A0A0L8RBU9/333-418  AC A0A0L8RBU9
#=GS A0A0L8RBU9/333-418  OS Saccharomyces eubayanus
#=GS A0A0L8RBU9/333-418  DE NRD1-like protein
#=GS A0A0L8RBU9/333-418  DR GENE3D; 36c76084215dfef421e70a35880110f7/333-418; 
#=GS A0A0L8RBU9/333-418  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; 
#=GS G8ZSI9/341-426      AC G8ZSI9
#=GS G8ZSI9/341-426      OS Torulaspora delbrueckii CBS 1146
#=GS G8ZSI9/341-426      DE Uncharacterized protein
#=GS G8ZSI9/341-426      DR GENE3D; 59ec90f580e3d7e97d96d5158fb0c89d/341-426; 
#=GS G8ZSI9/341-426      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Torulaspora; Torulaspora delbrueckii; 
#=GS A0A0L8VJ64/330-415  AC A0A0L8VJ64
#=GS A0A0L8VJ64/330-415  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VJ64/330-415  DE NRD1p RNA-binding subunit of Nrd1 complex
#=GS A0A0L8VJ64/330-415  DR GENE3D; 81a087d4dda3ee7f0f2f97d1133ad5ee/330-415; 
#=GS A0A0L8VJ64/330-415  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS W0VUH3/336-421      AC W0VUH3
#=GS W0VUH3/336-421      OS Zygosaccharomyces bailii ISA1307
#=GS W0VUH3/336-421      DE Related to Protein NRD1
#=GS W0VUH3/336-421      DR GENE3D; 958524d0ff09d82f0e93194c0866e911/336-421; 
#=GS W0VUH3/336-421      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Zygosaccharomyces; Zygosaccharomyces bailii; 
#=GS E7LZD6/330-415      AC E7LZD6
#=GS E7LZD6/330-415      OS Saccharomyces cerevisiae Vin13
#=GS E7LZD6/330-415      DE Nrd1p
#=GS E7LZD6/330-415      DR GENE3D; 99f006163df4a238f9f72ad1a110193b/330-415; 
#=GS E7LZD6/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS H0H043/334-419      AC H0H043
#=GS H0H043/334-419      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0H043/334-419      DE Nrd1p
#=GS H0H043/334-419      DR GENE3D; ab5a6e8bddad3a0df42b1fe54c54f248/334-419; 
#=GS H0H043/334-419      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS W0VJM7/336-421      AC W0VJM7
#=GS W0VJM7/336-421      OS Zygosaccharomyces bailii ISA1307
#=GS W0VJM7/336-421      DE Related to Protein NRD1
#=GS W0VJM7/336-421      DR GENE3D; b89eff832794665654bba842a7ac39d0/336-421; 
#=GS W0VJM7/336-421      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Zygosaccharomyces; Zygosaccharomyces bailii; 
#=GS S6E8C7/336-421      AC S6E8C7
#=GS S6E8C7/336-421      OS Zygosaccharomyces bailii CLIB 213
#=GS S6E8C7/336-421      DE ZYBA0S14-00342g1_1
#=GS S6E8C7/336-421      DR GENE3D; d130ccfbcf6a910f00753c648015773d/336-421; 
#=GS S6E8C7/336-421      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Zygosaccharomyces; Zygosaccharomyces bailii; 
#=GS E7QJM5/330-415      AC E7QJM5
#=GS E7QJM5/330-415      OS Saccharomyces cerevisiae VL3
#=GS E7QJM5/330-415      DE Nrd1p
#=GS E7QJM5/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS E7QJM5/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS E7NM40/330-415      AC E7NM40
#=GS E7NM40/330-415      OS Saccharomyces cerevisiae FostersO
#=GS E7NM40/330-415      DE Nrd1p
#=GS E7NM40/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS E7NM40/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS E7KHD9/330-415      AC E7KHD9
#=GS E7KHD9/330-415      OS Saccharomyces cerevisiae AWRI796
#=GS E7KHD9/330-415      DE Nrd1p
#=GS E7KHD9/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS E7KHD9/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8ZFY6/330-415      AC C8ZFY6
#=GS C8ZFY6/330-415      OS Saccharomyces cerevisiae EC1118
#=GS C8ZFY6/330-415      DE Nrd1p
#=GS C8ZFY6/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS C8ZFY6/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1NZY7/330-415      AC N1NZY7
#=GS N1NZY7/330-415      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1NZY7/330-415      DE Nrd1p
#=GS N1NZY7/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS N1NZY7/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LP95/330-415      AC B3LP95
#=GS B3LP95/330-415      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LP95/330-415      DE Protein NRD1
#=GS B3LP95/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS B3LP95/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WLL5/330-415      AC G2WLL5
#=GS G2WLL5/330-415      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WLL5/330-415      DE K7_Nrd1p
#=GS G2WLL5/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS G2WLL5/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS E7Q875/330-415      AC E7Q875
#=GS E7Q875/330-415      OS Saccharomyces cerevisiae FostersB
#=GS E7Q875/330-415      DE Nrd1p
#=GS E7Q875/330-415      DR GENE3D; d7e414dc349acf9b3f166dea4e7bcafc/330-415; 
#=GS E7Q875/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS E7KTA0/330-415      AC E7KTA0
#=GS E7KTA0/330-415      OS Saccharomyces cerevisiae Lalvin QA23
#=GS E7KTA0/330-415      DE Nrd1p
#=GS E7KTA0/330-415      DR GENE3D; d850145ebbd4a1c4c5fbb08b8a4a67a1/330-415; 
#=GS E7KTA0/330-415      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B2G496/327-412      AC B2G496
#=GS B2G496/327-412      OS Zygosaccharomyces rouxii
#=GS B2G496/327-412      DE Protein NRD1
#=GS B2G496/327-412      DR GENE3D; 6db4241f7ed8ee382da412cebcb38e45/327-412; 
#=GS B2G496/327-412      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Zygosaccharomyces; Zygosaccharomyces rouxii; 
#=GS C5DYV5/327-412      AC C5DYV5
#=GS C5DYV5/327-412      OS Zygosaccharomyces rouxii CBS 732
#=GS C5DYV5/327-412      DE ZYRO0F16060p
#=GS C5DYV5/327-412      DR GENE3D; 6db4241f7ed8ee382da412cebcb38e45/327-412; 
#=GS C5DYV5/327-412      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Zygosaccharomyces; Zygosaccharomyces rouxii; 
#=GF TC 92.8 1.8E-30
#=GF SQ 25
2m88A01/25-110              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
P53617/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
G5EBS6/197-308              -ENNQRVVSNKVFVGGISHMMNRKIINKFFGQFGTVFVDWPVKQKPNSRGKSIAI-GSYSYLFL-VYSDEQSVIKLMSACHRNSQNDFFVSVPGFRDMIQIRPWFIYNGFYILEK
H0GM89/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
A6ZRJ2/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
C7GPB0/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
A0A0L8RBU9/333-418          PPDHIKVYSRTLFIGGVPQNMKEWDLANVLRPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQHFNKDGA-------LP-----LRTR-WGV--GFGPRDC
G8ZSI9/341-426              PPDHIKVFSRTLFVGGVPMNMKEWDIANVLRPFAEV--------------QSVILNNARKHAFVKVYSRREAENVLLNFNKDGS-------SP-----LRTR-WGV--GFGPRDC
A0A0L8VJ64/330-415          PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
W0VUH3/336-421              PPEHIKVYSRTLFVGGVPMNMKEWDIASVLRPYAEV--------------QSVILNNSRKHAFVKVYSRQEAENVLLNFNKDGS-------SP-----LRTR-WGV--GFGPRDC
E7LZD6/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
H0H043/334-419              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLRPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
W0VJM7/336-421              PPEHIKVYSRTLFVGGVPMNMKEWDIASVLRPYAEV--------------QSVILNNSRKHAFVKVYSRQEAENVLLNFNKDGS-------SP-----LRTR-WGV--GFGPRDC
S6E8C7/336-421              PPEHIKVYSRTLFVGGVPMNMKEWDIASVLRPYAEV--------------QSVILNNSRKHAFVKVYSRQEAENVLLNFNKDSS-------SP-----LRTR-WGV--GFGPRDC
E7QJM5/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
E7NM40/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
E7KHD9/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
C8ZFY6/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
N1NZY7/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
B3LP95/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
G2WLL5/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
E7Q875/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
E7KTA0/330-415              PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEV--------------QSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA-------LP-----LRTR-WGV--GFGPRDC
B2G496/327-412              PSEHVKVYSRTLFVGGVPMNMKEWDIASVLRPYAEV--------------QSVILNNARKHAFVKVYSRQEAENVLLSFNKDGS-------SP-----LRTR-WGV--GFGPRDC
C5DYV5/327-412              PSEHVKVYSRTLFVGGVPMNMKEWDIASVLRPYAEV--------------QSVILNNARKHAFVKVYSRQEAENVLLSFNKDGS-------SP-----LRTR-WGV--GFGPRDC
#=GC scorecons              4456479596569799764596655664664676590000000000000069766467557596499955665559455565560000000490000066690947009945575
#=GC scorecons_70           ___*_**_*__*******__**___*___*__**_*______________***_*__*__*_**_***__**___*____*___________*_____****_*_*__**___*_
#=GC scorecons_80           _____**_*___*_***___*___________*__*_______________**____*__*_*__***_______*________________*________*_*_*__**___*_
#=GC scorecons_90           ______*_*___*_**____*______________*_______________*__________*__***_______*________________*________*_*____**_____
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