# STOCKHOLM 1.0
#=GF ID 3.30.70.330/FF/41957
#=GF DE RNA recognition motif-containing protein
#=GF AC 3.30.70.330/FF/41957
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 50.476
#=GS Q9LES2/234-352      AC Q9LES2
#=GS Q9LES2/234-352      OS Arabidopsis thaliana
#=GS Q9LES2/234-352      DE UBP1-associated protein 2A
#=GS Q9LES2/234-352      DR GENE3D; 80c18aa955be4e1eeccf74616c274b62/234-352; 
#=GS Q9LES2/234-352      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9LES2/234-352      DR GO; GO:0003729; GO:0005515; GO:0005634; GO:0005829; GO:0006952; GO:0008219; GO:0009693; GO:0009738; GO:0010150; GO:0017091; GO:0048255; 
#=GS O80678/220-332      AC O80678
#=GS O80678/220-332      OS Arabidopsis thaliana
#=GS O80678/220-332      DE UBP1-associated protein 2B
#=GS O80678/220-332      DR GENE3D; 787c1ee1e4ed95af7054153fd73e286e/220-332; 
#=GS O80678/220-332      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS O80678/220-332      DR GO; GO:0005634; GO:0006952; GO:0008219; GO:0009693; GO:0010150; 
#=GS A0A178VCS6/234-352  AC A0A178VCS6
#=GS A0A178VCS6/234-352  OS Arabidopsis thaliana
#=GS A0A178VCS6/234-352  DE UBA2A
#=GS A0A178VCS6/234-352  DR GENE3D; 80c18aa955be4e1eeccf74616c274b62/234-352; 
#=GS A0A178VCS6/234-352  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS R0FP73/245-363      AC R0FP73
#=GS R0FP73/245-363      OS Capsella rubella
#=GS R0FP73/245-363      DE Uncharacterized protein
#=GS R0FP73/245-363      DR GENE3D; 413a8eee59863f5aafead8d2931aa697/245-363; 
#=GS R0FP73/245-363      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D7LVK4/235-353      AC D7LVK4
#=GS D7LVK4/235-353      OS Arabidopsis lyrata subsp. lyrata
#=GS D7LVK4/235-353      DE Putative uncharacterized protein
#=GS D7LVK4/235-353      DR GENE3D; 7d21fc254f405c6a1bf9b239bd795107/235-353; 
#=GS D7LVK4/235-353      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS E4MVV4/239-358      AC E4MVV4
#=GS E4MVV4/239-358      OS Eutrema halophilum
#=GS E4MVV4/239-358      DE mRNA, clone: RTFL01-03-G08
#=GS E4MVV4/239-358      DR GENE3D; 8075baaac9f8a41f508a67737071b4e5/239-358; 
#=GS E4MVV4/239-358      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema halophilum; 
#=GS V4LWW4/239-358      AC V4LWW4
#=GS V4LWW4/239-358      OS Eutrema salsugineum
#=GS V4LWW4/239-358      DE Uncharacterized protein
#=GS V4LWW4/239-358      DR GENE3D; 8075baaac9f8a41f508a67737071b4e5/239-358; 
#=GS V4LWW4/239-358      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A078GPC8/213-333  AC A0A078GPC8
#=GS A0A078GPC8/213-333  OS Brassica napus
#=GS A0A078GPC8/213-333  DE BnaA09g36160D protein
#=GS A0A078GPC8/213-333  DR GENE3D; 913ae6a8b600e13a96f8f446c138ed3c/213-333; 
#=GS A0A078GPC8/213-333  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A078C519/219-339  AC A0A078C519
#=GS A0A078C519/219-339  OS Brassica napus
#=GS A0A078C519/219-339  DE BnaC08g27680D protein
#=GS A0A078C519/219-339  DR GENE3D; c06b111d13678dc86f6269c2eaccf978/219-339; 
#=GS A0A078C519/219-339  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A0D3DTR5/219-339  AC A0A0D3DTR5
#=GS A0A0D3DTR5/219-339  OS Brassica oleracea var. oleracea
#=GS A0A0D3DTR5/219-339  DE Uncharacterized protein
#=GS A0A0D3DTR5/219-339  DR GENE3D; c6f0c93606ebdd1109c94454ebbdd136/219-339; 
#=GS A0A0D3DTR5/219-339  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS D7LGI8/215-327      AC D7LGI8
#=GS D7LGI8/215-327      OS Arabidopsis lyrata subsp. lyrata
#=GS D7LGI8/215-327      DE RNA recognition motif-containing protein
#=GS D7LGI8/215-327      DR GENE3D; d2b69fcf8d813cd71a34f418f020ab0c/215-327; 
#=GS D7LGI8/215-327      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A1J3FMU2/222-332  AC A0A1J3FMU2
#=GS A0A1J3FMU2/222-332  OS Noccaea caerulescens
#=GS A0A1J3FMU2/222-332  DE UBP1-associated protein 2A
#=GS A0A1J3FMU2/222-332  DR GENE3D; d3ae781339e1f87bd84f1bc8dc61306a/222-332; 
#=GS A0A1J3FMU2/222-332  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS M4CST5/213-333      AC M4CST5
#=GS M4CST5/213-333      OS Brassica rapa subsp. pekinensis
#=GS M4CST5/213-333      DE Uncharacterized protein
#=GS M4CST5/213-333      DR GENE3D; df777d4a77580bb2cbf2a94cb72de085/213-333; 
#=GS M4CST5/213-333      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GF TC 228.0 9.9E-72
#=GF SQ 13
Q9LES2/234-352              ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYN-NPRYQRNDNNG-Y-------
O80678/220-332              F-------------NPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQ--HNHNSHNQNSRYQRNDNNG---------
A0A178VCS6/234-352          ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYN-NPRYQRNDNNG-Y-------
R0FP73/245-363              ---------PAQHSNSEHTQKKIYVSNVGAELDPHKLLAFFSKFGEIEEGPLGLDKFTGRPKGFCLFVYKSAESAKRALEEPHKTFEGQVLHCQKAIDGPKPGKQQH-HHNPHSHN-NPRYQRNDNNG-YG------
D7LVK4/235-353              ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLGFFSKFGEIEEGPLGLDKFTGRPKGFCLFVYKSAESAKRALEEPHKTFEGHILHCQKAIDGPKPGKQQH-HHNPHAHN-NPRYQRNDNNG-YG------
E4MVV4/239-358              ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKFTGRPKGFCLFVYKSPESAKRALEEPHKTFEGHILHCQKAIDGPKPGKPQQ--YNTHNHN-NPRFQRNDNNG-YGAP----
V4LWW4/239-358              ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKFTGRPKGFCLFVYKSPESAKRALEEPHKTFEGHILHCQKAIDGPKPGKPQQ--YNTHNHN-NPRFQRNDNNG-YGAP----
A0A078GPC8/213-333          ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLAFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSAESAKKALEEPHKSFEGHILHCQKAIDGPKPGKPQQ--FN----N-NPRFQRNDNSGGYGTPTGHG
A0A078C519/219-339          ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLAFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSAESAKKALEEPHKSFEGHILHCQKAIDGPKPGKPQQ--FN----S-NPRFQRNDNSGGYGTPAGHG
A0A0D3DTR5/219-339          ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLAFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSAESAKKALEEPHKSFEGHILHCQKAIDGPKPGKPQQ--FN----S-NPRFQRNDNSGGYGTPAGHG
D7LGI8/215-327              F-------------NPENVQRKIYVSNVSADLDPQKLLEFFSRFGEIEEGPLGLDKVTGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQ--HNHNSHNQNSRYQRNDSNG---------
A0A1J3FMU2/222-332          VAATASSVVPAQNSNSEHTQKKIYVSNVGAELDPQKLLAYFSKFGEIEEGPLGLDKFTGRPKGFCLFVYKTAESAKRALEEPHKTFEGHVLHCQKAIDGPKPGKPLH--QNTH------------------------
M4CST5/213-333              ---------PAQHSNSEHTQKKIYVSNVGAELDPQKLLAFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSAESAKKALEEPHKSFEGHILHCQKAIDGPKPGKPQQ--FN----N-NPRFQRNDNSGGYGTPAGHG
#=GC scorecons              00000000055545969669799999996977998999489979999999999999599999996999977499997999999969998799979969999669557005923125064656666546032010000
#=GC scorecons_70           ______________************************_*****************_**************_************************_*****_*__*___*______*_*_****__*_________
#=GC scorecons_80           ______________*_*__*********_*********_*****************_*******_******_****_*******_****_******_****__*__*___*__________________________
#=GC scorecons_90           ______________*_*__*_*******_*__******_***_*************_*******_****___****_*******_****_***_**_****__*______*__________________________
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