# STOCKHOLM 1.0
#=GF ID 3.30.70.270/FF/50459
#=GF DE LINE-1 retrotransposable element ORF2 protein
#=GF AC 3.30.70.270/FF/50459
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 81.754
#=GS P16423/464-622          AC P16423
#=GS P16423/464-622          OS Drosophila melanogaster
#=GS P16423/464-622          DE Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM
#=GS P16423/464-622          DR GENE3D; 0d073a1992845b9494515651c71fc632/464-622; 
#=GS P16423/464-622          DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS P16423/464-622          DR EC; 2.7.7.49; 
#=GS A0A146NMC6/200-356      AC A0A146NMC6
#=GS A0A146NMC6/200-356      OS Fundulus heteroclitus
#=GS A0A146NMC6/200-356      DE Reverse transcriptase
#=GS A0A146NMC6/200-356      DR GENE3D; 3457c961bede44eaec9dd4d1882b453b/200-356; 
#=GS A0A146NMC6/200-356      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Atherinomorphae; Cyprinodontiformes; Cyprinodontoidei; Fundulidae; Fundulus; Fundulus heteroclitus; 
#=GS K7E0K1/61-94_135-218    AC K7E0K1
#=GS K7E0K1/61-94_135-218    OS Monodelphis domestica
#=GS K7E0K1/61-94_135-218    DE Uncharacterized protein
#=GS K7E0K1/61-94_135-218    DR GENE3D; cc6976c16ef307ec297c29fab8f76589/61-94_135-218; 
#=GS K7E0K1/61-94_135-218    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Didelphimorphia; Didelphidae; Didelphinae; Monodelphis; Monodelphis domestica; 
#=GS O44316/451-503_535-614  AC O44316
#=GS O44316/451-503_535-614  OS Drosophila mercatorum
#=GS O44316/451-503_535-614  DE Reverse transcriptase domain protein
#=GS O44316/451-503_535-614  DR GENE3D; 62c77aa36c9754954f528c5e1ae3195b/451-503_535-614; 
#=GS O44316/451-503_535-614  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; repleta group; mercatorum subgroup; Drosophila mercatorum; 
#=GS A0A060BQU5/35-118       AC A0A060BQU5
#=GS A0A060BQU5/35-118       OS uncultured bacterium
#=GS A0A060BQU5/35-118       DE RVT_1
#=GS A0A060BQU5/35-118       DR GENE3D; e5d2a715bda236db2893e03a03615aa9/35-118; 
#=GS A0A060BQU5/35-118       DR ORG; Bacteria; uncultured bacterium; 
#=GF TC 22.3 2.2E-08
#=GF SQ 5
P16423/464-622                  -----------LVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSE---IGAKVGNAITNAAAFADDLVLFAETR-MGLQVLLDKTLDFLSIVGLKLNADKCFTVGIK----------
A0A146NMC6/200-356              ---------------------------SLDAEKAFDRVSWNYLYYTLGKFGFQHSFLEIIKMIYTDSKATVTTNGSRSDQFLIERGTKQGDPLSPLLFIIALEPLAQAIRQNKIIKGITMGEIDNKMLIFADDVLLLLSNPEESLPPLLDLINNFSDLSGYKINWSKCEVMPLSKLCYKSHIQK
K7E0K1/61-94_135-218            FNIRKTIHIIDHINKQTSKNH---MIISIDAEKAF-----------------------------------------------------DKCPLSPLLFDIVLETLAVAIREDKEIEGIRIGKEETKLSLFADDMMVYLKNPRDSTKKLIEIINNFSKVAGYKINPHKSSAFLYI----------
O44316/451-503_535-614          -------TIVDLVLRDHHKRYASCYIATLDVSKAFDSVAHDAVFNTVTAYGAPKSFVDYV-------------------------------PLSPVLFNLIIDRLLRSLPKD---IGVHVGNAKVNACAFADDLMLFASTP-KGLQELLNTTVKFLSSVGLTLNADKCFTISIKG---------
A0A060BQU5/35-118               ----------------------------------------------------------------------------------------QGCPLSPLLFNIVLEVLARPIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFY------------
#=GC scorecons                  0000000000011111012110001212353255521111001202101221111211110000000000000000000000000000332999959946556295446535212395359433454349999556553560254429743535943449566923952442210000000000
#=GC scorecons_70               ___________________________________________________________________________________________****_**____*_*___________*___*________****_______*______**_____*____*_*_*__*_________________
#=GC scorecons_80               ___________________________________________________________________________________________****_**______*___________*___*________****______________*______*____*___*__*_________________
#=GC scorecons_90               ___________________________________________________________________________________________****_**______*___________*___*________****______________*______*____*___*__*_________________
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