# STOCKHOLM 1.0 #=GF ID 3.30.70.270/FF/50398 #=GF DE Putative retroelement pol polyprotein #=GF AC 3.30.70.270/FF/50398 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 87.762 #=GS P10401/404-486_598-610 AC P10401 #=GS P10401/404-486_598-610 OS Drosophila melanogaster #=GS P10401/404-486_598-610 DE Retrovirus-related Pol polyprotein from transposon gypsy #=GS P10401/404-486_598-610 DR GENE3D; 64254c8c0a2d4f7f1d452f9cd5b86198/404-486_598-610; #=GS P10401/404-486_598-610 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS P10401/404-486_598-610 DR EC; 2.7.7.49; #=GS P92523/49-131 AC P92523 #=GS P92523/49-131 OS Arabidopsis thaliana #=GS P92523/49-131 DE Uncharacterized mitochondrial protein AtMg00860 #=GS P92523/49-131 DR GENE3D; 24fc9b708a622d02abe8239ba0d7ec71/49-131; #=GS P92523/49-131 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A178U655/439-520 AC A0A178U655 #=GS A0A178U655/439-520 OS Arabidopsis thaliana #=GS A0A178U655/439-520 DE Uncharacterized protein #=GS A0A178U655/439-520 DR GENE3D; c187281524721fefb2f4d37c88623b03/439-520; #=GS A0A178U655/439-520 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS D7QZ77/393-475_587-599 AC D7QZ77 #=GS D7QZ77/393-475_587-599 OS Drosophila melanogaster #=GS D7QZ77/393-475_587-599 DE Pol protein #=GS D7QZ77/393-475_587-599 DR GENE3D; 5c66896096c212f09e2f6b8b5db2926b/393-475_587-599; #=GS D7QZ77/393-475_587-599 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS O44384/832-914_1026-1038 AC O44384 #=GS O44384/832-914_1026-1038 OS Drosophila melanogaster #=GS O44384/832-914_1026-1038 DE Prgag-pol #=GS O44384/832-914_1026-1038 DR GENE3D; 8535ac7bc06829b9a287e4bc0f7b87ca/832-914_1026-1038; #=GS O44384/832-914_1026-1038 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS Q967T5/381-463_575-587 AC Q967T5 #=GS Q967T5/381-463_575-587 OS Drosophila melanogaster #=GS Q967T5/381-463_575-587 DE RNA-directed DNA polymerase #=GS Q967T5/381-463_575-587 DR GENE3D; d393dbcac9e7e2b9ab0d5c0ce23862e3/381-463_575-587; #=GS Q967T5/381-463_575-587 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS O01351/410-491_604-616 AC O01351 #=GS O01351/410-491_604-616 OS Drosophila melanogaster #=GS O01351/410-491_604-616 DE Reverse transcriptase polyprotein #=GS O01351/410-491_604-616 DR GENE3D; 507b8eaedf635895061aa3acecae07b5/410-491_604-616; #=GS O01351/410-491_604-616 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS Q967S6/417-499_611-623 AC Q967S6 #=GS Q967S6/417-499_611-623 OS Drosophila melanogaster #=GS Q967S6/417-499_611-623 DE Reverse transcriptase-like polymerase #=GS Q967S6/417-499_611-623 DR GENE3D; ef4c57449c35cd0b20ec487ada09050a/417-499_611-623; #=GS Q967S6/417-499_611-623 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS A0A0A1WWW7/36-118_230-242 AC A0A0A1WWW7 #=GS A0A0A1WWW7/36-118_230-242 OS Bactrocera cucurbitae #=GS A0A0A1WWW7/36-118_230-242 DE Retrovirus-related Pol polyprotein from transposon gypsy #=GS A0A0A1WWW7/36-118_230-242 DR GENE3D; 85f5be07c502a610bdce7f4cc1a61998/36-118_230-242; #=GS A0A0A1WWW7/36-118_230-242 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Dacini; Bactrocera; Zeugodacus; Bactrocera cucurbitae; #=GS Q24749/378-459_572-584 AC Q24749 #=GS Q24749/378-459_572-584 OS Drosophila virilis #=GS Q24749/378-459_572-584 DE Reverse transcriptase endonuclease #=GS Q24749/378-459_572-584 DR GENE3D; b3f915e46c4acfa1e86fa4a36c247243/378-459_572-584; #=GS Q24749/378-459_572-584 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; virilis group; Drosophila virilis; #=GS A0A034WX56/14-94 AC A0A034WX56 #=GS A0A034WX56/14-94 OS Bactrocera dorsalis #=GS A0A034WX56/14-94 DE Retrovirus-related Pol polyprotein from transposon gypsy #=GS A0A034WX56/14-94 DR GENE3D; 91c238f9e9d9c3920e85151a1cb068bb/14-94; #=GS A0A034WX56/14-94 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Dacini; Bactrocera; Bactrocera; Bactrocera dorsalis; #=GS W8C5N0/40-122_234-246 AC W8C5N0 #=GS W8C5N0/40-122_234-246 OS Ceratitis capitata #=GS W8C5N0/40-122_234-246 DE Retrovirus-related Pol polyprotein from transposon gypsy #=GS W8C5N0/40-122_234-246 DR GENE3D; d7981ccdb1b12adc31cef2343221eff0/40-122_234-246; #=GS W8C5N0/40-122_234-246 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Ceratitidini; Ceratitis; Ceratitis; Ceratitis capitata; #=GS A0A034VEK3/10-73_185-197 AC A0A034VEK3 #=GS A0A034VEK3/10-73_185-197 OS Bactrocera dorsalis #=GS A0A034VEK3/10-73_185-197 DE Retrovirus-related Pol polyprotein from transposon gypsy #=GS A0A034VEK3/10-73_185-197 DR GENE3D; a5f26bc929b884dfbb02f8e637231125/10-73_185-197; #=GS A0A034VEK3/10-73_185-197 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Dacini; Bactrocera; Bactrocera; Bactrocera dorsalis; #=GS W8BUS8/400-482_594-606 AC W8BUS8 #=GS W8BUS8/400-482_594-606 OS Ceratitis capitata #=GS W8BUS8/400-482_594-606 DE Retrovirus-related Pol polyprotein from transposon opus #=GS W8BUS8/400-482_594-606 DR GENE3D; f41d8b262293910b96f651a7872d056a/400-482_594-606; #=GS W8BUS8/400-482_594-606 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Ceratitidini; Ceratitis; Ceratitis; Ceratitis capitata; #=GS A0A034V2I7/65-145 AC A0A034V2I7 #=GS A0A034V2I7/65-145 OS Bactrocera dorsalis #=GS A0A034V2I7/65-145 DE Retrovirus-related Pol polyprotein from transposon gypsy #=GS A0A034V2I7/65-145 DR GENE3D; 1417a9b6d7c44778035eefc50175b843/65-145; #=GS A0A034V2I7/65-145 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Dacini; Bactrocera; Bactrocera; Bactrocera dorsalis; #=GS A0A034WG51/37-118_230-242 AC A0A034WG51 #=GS A0A034WG51/37-118_230-242 OS Bactrocera dorsalis #=GS A0A034WG51/37-118_230-242 DE Retrovirus-related Pol polyprotein from transposon gypsy #=GS A0A034WG51/37-118_230-242 DR GENE3D; e293df294892531460310b1819b34c7d/37-118_230-242; #=GS A0A034WG51/37-118_230-242 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Dacini; Bactrocera; Bactrocera; Bactrocera dorsalis; #=GS A0A034WG56/37-118_230-242 AC A0A034WG56 #=GS A0A034WG56/37-118_230-242 OS Bactrocera dorsalis #=GS A0A034WG56/37-118_230-242 DE Retrovirus-related Pol polyprotein from transposon gypsy #=GS A0A034WG56/37-118_230-242 DR GENE3D; e293df294892531460310b1819b34c7d/37-118_230-242; #=GS A0A034WG56/37-118_230-242 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Dacini; Bactrocera; Bactrocera; Bactrocera dorsalis; #=GF TC 121.2 1.3E-38 #=GF SQ 17 P10401/404-486_598-610 ----AIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILAS------EDVILPGKENFVADALSR P92523/49-131 AKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLK------------KNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLP-----------F A0A178U655/439-520 AKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLK------------KNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLP------------ D7QZ77/393-475_587-599 ----AIKEYPEPTNLYELRSFLGLASYYRCFIKDFAAIARPLTSLMKGENGSISKHMSRKAPIEFGDLQRDAFERLRNVLAS------EDVILPGKDNHVADALSR O44384/832-914_1026-1038 ----AIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILAS------EDVILPGKENFVADALSR Q967T5/381-463_575-587 ----AIKEFPEPKNVFEVRSFLGLASYYRCFIKDFASIARPISDILKGENGSVSRHRSRSIQVEFSEAQQRAFEKLRNILAS------EDVILPGRNNLVADALSR O01351/410-491_604-616 ----AIQKYNQPTNLFSVRSFLGLASYYRCFIKDFASIARPLTDILKGENGKVSASQSKKIPISFDERQCSAFEKLKNVLVS------ENV-MPGKETYVADALSR Q967S6/417-499_611-623 ----AISDFPIPRTLKELRSFLGLSGYYRRFIPNYAKLAKPLSSLLRGEDGRISRTLSSKKSVSLNREAIEAFKKLKSSLVS------PDVILPGRENTVADALSR A0A0A1WWW7/36-118_230-242 ----AVQEYPELKDLFSLRSFLGLASYYRCFIKDFASIARPLTEILKGENGLVSKHKSRRVLIDFSEAQRNAFERLRNILAS------EDVILPGKENSVADALSR Q24749/378-459_572-584 ----AIQEFPEPKNVYSVRSFLGLANYYRVFIKDFAAIARPISDILKGENGSVSRHVSKKIPVEFNEVQRDAFHRLRSILAS------EDV-MPGKENLVADALSR A0A034WX56/14-94 -----ILNYKLPTTLRALRSFLGLSGYYRRFVKDYARIVKPLTKYLRGENGNVGANKLKAVVIELDHEAIRAFEKIKRVLAS------EDVL-------------- W8C5N0/40-122_234-246 ----AIANFPQPATLKELRSFLGMSGYYRRFIKDYAKLAKPLTSLLRGEEGRISKNKSSKVNIILNEDAIRAFNNIKISLTS------EDIVLPGKQNVVADALSR A0A034VEK3/10-73_185-197 -----------------------LASYYRCFIKDFASLAKPLTDMLKGENGKVSATQSKKIKIQLAPEGIDAFNKLREILAS------EDVTLPGKENHVADALSR W8BUS8/400-482_594-606 ----AIAKMPYPENIKQLRSFLGLSGYYRRFIKDYAKLAKPLTILLRGEEGHVSKNKSNKISIELNEDAKDAFNKIKNSLMS------DEVILPGTTNVVADALSR A0A034V2I7/65-145 -----ILDFAVPKSLRALRSFLGLAGYYRRFVKDYAAITKPLTKYLRGENGNIGANQSRKIEITLDEEALNAFGRIKKILAS------EDVL-------------- A0A034WG51/37-118_230-242 -----MLNFPAPENLYSLRSFLGLASYYRCFIKDFASIAKPLTDILKGENGKVSANQSKKVKVTLDSRQYQAFDTLKSILIS------EDVMLPGKENNVADALSR A0A034WG56/37-118_230-242 -----MLNFPAPENLYSLRSFLGLASYYRCFIKDFASIAKPLTDILKGENGKVSANQSKKVKVTLDSRQYQAFDTLKSILIS------EDVMLPGKENNVADALSR #=GC scorecons 0000452345373442367677785599949787774767977458755452443325374363545353399447735757000000587356432314444444 #=GC scorecons_70 ___________*______*_****__***_******_******__**____________*___________**__**__*_*_______**__*____________ #=GC scorecons_80 __________________*_****__***_***_**____***__**________________________**___*__*_*_______*________________ #=GC scorecons_90 _______________________*__***_*_*_______*____*_________________________**________________*________________ //