# STOCKHOLM 1.0 #=GF ID 3.30.565.10/FF/80159 #=GF DE Phytochrome A type 4 #=GF AC 3.30.565.10/FF/80159 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 38.927 #=GS Q10DU0/964-1125 AC Q10DU0 #=GS Q10DU0/964-1125 OS Oryza sativa Japonica Group #=GS Q10DU0/964-1125 DE Phytochrome A #=GS Q10DU0/964-1125 DR GENE3D; 9bc7293d244dfb3c3b9d9d9f2b0a3e38/964-1125; #=GS Q10DU0/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS P06593/962-1123 AC P06593 #=GS P06593/962-1123 OS Avena sativa #=GS P06593/962-1123 DE Phytochrome A type 3 #=GS P06593/962-1123 DR GENE3D; 04d6901fe648e1db5ac7aa901cd735d8/962-1123; #=GS P06593/962-1123 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Poeae; Aveninae; Avena; Avena sativa; #=GS P06593/962-1123 DR GO; GO:0005515; #=GS B8AQP9/722-883 AC B8AQP9 #=GS B8AQP9/722-883 OS Oryza sativa Indica Group #=GS B8AQP9/722-883 DE Putative uncharacterized protein #=GS B8AQP9/722-883 DR GENE3D; 06440e070cb54ab842b6cf196f50b2e1/722-883; #=GS B8AQP9/722-883 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS A0A1D6GIV4/879-1054 AC A0A1D6GIV4 #=GS A0A1D6GIV4/879-1054 OS Zea mays #=GS A0A1D6GIV4/879-1054 DE Uncharacterized protein #=GS A0A1D6GIV4/879-1054 DR GENE3D; 1513aa8e406b6515be778804b2281f33/879-1054; #=GS A0A1D6GIV4/879-1054 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS Q6XFQ4/964-1125 AC Q6XFQ4 #=GS Q6XFQ4/964-1125 OS Zea mays #=GS Q6XFQ4/964-1125 DE Phytochrome #=GS Q6XFQ4/964-1125 DR GENE3D; 6cfe2bebb354d33fee6dbece6fd39122/964-1125; #=GS Q6XFQ4/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A0D3FNB9/964-1125 AC A0A0D3FNB9 #=GS A0A0D3FNB9/964-1125 OS Oryza barthii #=GS A0A0D3FNB9/964-1125 DE Phytochrome #=GS A0A0D3FNB9/964-1125 DR GENE3D; 7172868031e4f6a104f9aca3f503f97e/964-1125; #=GS A0A0D3FNB9/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS I1PIA5/964-1125 AC I1PIA5 #=GS I1PIA5/964-1125 OS Oryza glaberrima #=GS I1PIA5/964-1125 DE Phytochrome #=GS I1PIA5/964-1125 DR GENE3D; 7172868031e4f6a104f9aca3f503f97e/964-1125; #=GS I1PIA5/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; #=GS A0A0E0D5T3/964-1125 AC A0A0E0D5T3 #=GS A0A0E0D5T3/964-1125 OS Oryza meridionalis #=GS A0A0E0D5T3/964-1125 DE Phytochrome #=GS A0A0E0D5T3/964-1125 DR GENE3D; 779cf569d40feb3add888d456e72575b/964-1125; #=GS A0A0E0D5T3/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; #=GS J3LS96/964-1125 AC J3LS96 #=GS J3LS96/964-1125 OS Oryza brachyantha #=GS J3LS96/964-1125 DE Phytochrome #=GS J3LS96/964-1125 DR GENE3D; 7dfa9541ee12fcb2c8429d10db12ca14/964-1125; #=GS J3LS96/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; #=GS P19862/964-1125 AC P19862 #=GS P19862/964-1125 OS Zea mays #=GS P19862/964-1125 DE Phytochrome A #=GS P19862/964-1125 DR GENE3D; 8e519f2767e3ca2d229aa57ef2423b7d/964-1125; #=GS P19862/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS Q53ZT7/964-1125 AC Q53ZT7 #=GS Q53ZT7/964-1125 OS Zea mays #=GS Q53ZT7/964-1125 DE Phytochrome #=GS Q53ZT7/964-1125 DR GENE3D; 8e519f2767e3ca2d229aa57ef2423b7d/964-1125; #=GS Q53ZT7/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A0D9VYA6/964-1125 AC A0A0D9VYA6 #=GS A0A0D9VYA6/964-1125 OS Leersia perrieri #=GS A0A0D9VYA6/964-1125 DE Phytochrome #=GS A0A0D9VYA6/964-1125 DR GENE3D; 90f10593854de33f5918ef8720807b4a/964-1125; #=GS A0A0D9VYA6/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS A2XLG5/964-1125 AC A2XLG5 #=GS A2XLG5/964-1125 OS Oryza sativa Indica Group #=GS A2XLG5/964-1125 DE Phytochrome A #=GS A2XLG5/964-1125 DR GENE3D; 9bc7293d244dfb3c3b9d9d9f2b0a3e38/964-1125; #=GS A2XLG5/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS A0A0D9YYV2/964-1125 AC A0A0D9YYV2 #=GS A0A0D9YYV2/964-1125 OS Oryza glumipatula #=GS A0A0D9YYV2/964-1125 DE Phytochrome #=GS A0A0D9YYV2/964-1125 DR GENE3D; a433ae2365f4e7419bbf85555016e19c/964-1125; #=GS A0A0D9YYV2/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; #=GS A0A0E0P0J8/964-1125 AC A0A0E0P0J8 #=GS A0A0E0P0J8/964-1125 OS Oryza rufipogon #=GS A0A0E0P0J8/964-1125 DE Phytochrome #=GS A0A0E0P0J8/964-1125 DR GENE3D; d3ffccb7d6417aeaab06ab116c3b8a49/964-1125; #=GS A0A0E0P0J8/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; #=GS K4A530/967-1127 AC K4A530 #=GS K4A530/967-1127 OS Setaria italica #=GS K4A530/967-1127 DE Phytochrome #=GS K4A530/967-1127 DR GENE3D; d5c933855142a2f8ebcc80b29314358c/967-1127; #=GS K4A530/967-1127 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GS P93526/967-1128 AC P93526 #=GS P93526/967-1128 OS Sorghum bicolor #=GS P93526/967-1128 DE Phytochrome a #=GS P93526/967-1128 DR GENE3D; e89bda473f0a76a4dd583f1ebcb92e30/967-1128; #=GS P93526/967-1128 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS Q53YS9/967-1128 AC Q53YS9 #=GS Q53YS9/967-1128 OS Sorghum bicolor #=GS Q53YS9/967-1128 DE Phytochrome #=GS Q53YS9/967-1128 DR GENE3D; e89bda473f0a76a4dd583f1ebcb92e30/967-1128; #=GS Q53YS9/967-1128 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS C5WMY6/964-1125 AC C5WMY6 #=GS C5WMY6/964-1125 OS Sorghum bicolor #=GS C5WMY6/964-1125 DE Phytochrome #=GS C5WMY6/964-1125 DR GENE3D; fe71165bebd2d4580e134ddbef331844/964-1125; #=GS C5WMY6/964-1125 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GF TC 337.6 7.6E-105 #=GF SQ 19 Q10DU0/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA--- P06593/962-1123 ----------------------CLDLEMAEFLLQDVVVAAVSQVLITCQGKGIRISCNLPERFMKQSVYGDGVRLQQILSDFLFISVKFSPVGGSVEISSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDNKEQSEEGLSLLVSRNLLRLMNGDVRHLREAGVSTFIITAELASA--- B8AQP9/722-883 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA--- A0A1D6GIV4/879-1054 DDLQHALHVQQASEQTAQRKSSCLDLDMAEFVLQDVVVSAVSQVLIGCQAKGIRVACNLPERSMKQKVYGDGIRLQQIVSDFLFVSVKFSPAGGSVDISSKLTKNSIGENLHLIDFELRIKHRGAGVPAEILSQMYEEDNKEQSEEGFSLAVSRNLLRLMNGDIRHLREAGMSTFI----------- Q6XFQ4/964-1125 ----------------------CLDLDMAEFVLQDVVVSAVSQVLIGCQGKGIRVACNLPERSMKQKVYGDGIRLQQILSDFLFVSVKFSPAGGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYGEDNREQSEEGLSLLVSRNLLRLMNGDIRHLREAGMSTFILTAELAAA--- A0A0D3FNB9/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA--- I1PIA5/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA--- A0A0E0D5T3/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA--- J3LS96/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGIRLQQILSDFLFVSVKFSPVGGSVEVSCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDDKDQSDEGLSLAVSRNLLRLMNGDVRHMREAGMSTFILTVELASA--- P19862/964-1125 ----------------------CLDLDMAEFVLQDVVVSAVSQVLIGCQAKGIRVACNLPERSMKQKVYGDGIRLQQIVSDFLFVSVKFSPAGGSVDISSKLTKNSIGENLHLIDFELRIKHRGAGVPAEILSQMYEEDNKEQSEEGFSLAVSRNLLRLMNGDIRHLREAGMSTFILTAELAAA--- Q53ZT7/964-1125 ----------------------CLDLDMAEFVLQDVVVSAVSQVLIGCQAKGIRVACNLPERSMKQKVYGDGIRLQQIVSDFLFVSVKFSPAGGSVDISSKLTKNSIGENLHLIDFELRIKHRGAGVPAEILSQMYEEDNKEQSEEGFSLAVSRNLLRLMNGDIRHLREAGMSTFILTAELAAA--- A0A0D9VYA6/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGIRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGLSLAVSRNLLRLMNGEVRHMREAGMSTFILTVELASA--- A2XLG5/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA--- A0A0D9YYV2/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA--- A0A0E0P0J8/964-1125 ----------------------CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA--- K4A530/967-1127 -------------------------LDMAEFVLQDVVVAAVSQVLIGCQGKGIRVSCNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPAGGSVDISSKLTKNSIGENLHLIDLELRIKQQGTGVPAEIISQMYEEENKEQSEEGLSLLVSRNLLRLMNGDIRHMREAGMSTFILTAELASAPT- P93526/967-1128 -------------------------LDMAEFVLEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPVGGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLLVSRNLLRLMNGNIRHIREAGMSTFILTAELAAAPSA Q53YS9/967-1128 -------------------------LDMAEFVLEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPVGGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLLVSRNLLRLMNGNIRHIREAGMSTFILTAELAAAPSA C5WMY6/964-1125 ----------------------CLDLDMAEFVLEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPVGGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLLVSRNLLRLMNGNIRHLREAGMSTFILTAELAAA--- #=GC scorecons 0000000000000000000000555979699897995969999999599699998699999959995999997999997999998999999699997896599999999999999699999879499997678998878888797995995999999999997799699998999964466646000 #=GC scorecons_70 _________________________***_*******_*_*******_********_******_***_********************************__***********************_**********************_**_***************_*********___***_*___ #=GC scorecons_80 _________________________*_*_*******_*_*******_**_*****_******_***_***********_************_****_**__**************_******_*_****__******_******_**_**_************_**_*********___________ #=GC scorecons_90 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