# STOCKHOLM 1.0
#=GF ID 3.30.50.10/FF/150
#=GF DE Nuclear hormone receptor family member nhr-40
#=GF AC 3.30.50.10/FF/150
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 22.298
#=GS Q22127/21-130      AC Q22127
#=GS Q22127/21-130      OS Caenorhabditis elegans
#=GS Q22127/21-130      DE Nuclear hormone receptor family member nhr-40
#=GS Q22127/21-130      DR GENE3D; ba3e968c5e17b6a7b3d0a90f4a05f2f5/21-130; 
#=GS Q22127/21-130      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A8WRX9/21-130      AC A8WRX9
#=GS A8WRX9/21-130      OS Caenorhabditis briggsae
#=GS A8WRX9/21-130      DE Protein CBR-NHR-40
#=GS A8WRX9/21-130      DR GENE3D; 45f8be88f3a0b52823f420360d4c24a9/21-130; 
#=GS A8WRX9/21-130      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS W2TSF2/40-154      AC W2TSF2
#=GS W2TSF2/40-154      OS Necator americanus
#=GS W2TSF2/40-154      DE Zinc finger, C4 type
#=GS W2TSF2/40-154      DR GENE3D; 68e46f755e9b6ae616e5bfa87fdbc45c/40-154; 
#=GS W2TSF2/40-154      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Bunostominae; Necator; Necator americanus; 
#=GS A0A0R3PAD3/6-117   AC A0A0R3PAD3
#=GS A0A0R3PAD3/6-117   OS Angiostrongylus costaricensis
#=GS A0A0R3PAD3/6-117   DE Uncharacterized protein
#=GS A0A0R3PAD3/6-117   DR GENE3D; 8c5578df0de8040ddf1637f2a71f95ba/6-117; 
#=GS A0A0R3PAD3/6-117   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Metastrongyloidea; Angiostrongylidae; Angiostrongylus; Angiostrongylus costaricensis; 
#=GS A0A0N4XW26/20-131  AC A0A0N4XW26
#=GS A0A0N4XW26/20-131  OS Nippostrongylus brasiliensis
#=GS A0A0N4XW26/20-131  DE Uncharacterized protein
#=GS A0A0N4XW26/20-131  DR GENE3D; 8f7fa47986ccfcacf511a8351aeb3a7b/20-131; 
#=GS A0A0N4XW26/20-131  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Trichostrongyloidea; Heligmonellidae; Nippostrongylinae; Nippostrongylus; Nippostrongylus brasiliensis; 
#=GS A0A0D8X9B8/18-128  AC A0A0D8X9B8
#=GS A0A0D8X9B8/18-128  OS Dictyocaulus viviparus
#=GS A0A0D8X9B8/18-128  DE Zinc finger, C4 type
#=GS A0A0D8X9B8/18-128  DR GENE3D; a41e24c27ecd4d41f37402b1ddb78920/18-128; 
#=GS A0A0D8X9B8/18-128  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Trichostrongyloidea; Dictyocaulidae; Dictyocaulinae; Dictyocaulus; Dictyocaulus viviparus; 
#=GS A0A016USZ0/60-171  AC A0A016USZ0
#=GS A0A016USZ0/60-171  OS Ancylostoma ceylanicum
#=GS A0A016USZ0/60-171  DE Uncharacterized protein
#=GS A0A016USZ0/60-171  DR GENE3D; b134a8c23ac142cbd5efe2ae00d6944d/60-171; 
#=GS A0A016USZ0/60-171  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS A0A016UV35/62-173  AC A0A016UV35
#=GS A0A016UV35/62-173  OS Ancylostoma ceylanicum
#=GS A0A016UV35/62-173  DE Uncharacterized protein
#=GS A0A016UV35/62-173  DR GENE3D; b471959fc2509f1dc3dc5784eaa833b2/62-173; 
#=GS A0A016UV35/62-173  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS A0A016USC1/62-173  AC A0A016USC1
#=GS A0A016USC1/62-173  OS Ancylostoma ceylanicum
#=GS A0A016USC1/62-173  DE Uncharacterized protein
#=GS A0A016USC1/62-173  DR GENE3D; b4cb8d9df362020f866d6a6a77e68af8/62-173; 
#=GS A0A016USC1/62-173  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS G0M732/21-130      AC G0M732
#=GS G0M732/21-130      OS Caenorhabditis brenneri
#=GS G0M732/21-130      DE CBN-NHR-40 protein
#=GS G0M732/21-130      DR GENE3D; c41e233972cdf8eac28060e0e3104e28/21-130; 
#=GS G0M732/21-130      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A158QJS2/10-121  AC A0A158QJS2
#=GS A0A158QJS2/10-121  OS Haemonchus placei
#=GS A0A158QJS2/10-121  DE Uncharacterized protein
#=GS A0A158QJS2/10-121  DR GENE3D; df36c747d77f5cd8123daeb346555b11/10-121; 
#=GS A0A158QJS2/10-121  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Trichostrongyloidea; Haemonchidae; Haemonchinae; Haemonchus; Haemonchus placei; 
#=GS E3M2H2/21-130      AC E3M2H2
#=GS E3M2H2/21-130      OS Caenorhabditis remanei
#=GS E3M2H2/21-130      DE CRE-NHR-40 protein
#=GS E3M2H2/21-130      DR GENE3D; f6f58129b202b63c050b7f2b33ec5f56/21-130; 
#=GS E3M2H2/21-130      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GF TC 247.3 4.1E-78
#=GF SQ 12
Q22127/21-130              KREKIPEGTLCVVCSDFASGIHYSVASCNGCKTFFRRALV----NKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKREEEKRLKEMVIK--
A8WRX9/21-130              KREKIPEGTLCVVCSDLASGIHYSVASCNGCKTFFRRALV----NKQTFTCQFTGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKREEEKRLKEVVIK--
W2TSF2/40-154              -REKIPEGTLCVVCADLASGIHYSVPSCNGCKTFFRRALVILLQNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKKEEERRLREQNELSL
A0A0R3PAD3/6-117           EREKIPEGTPCVVCADLASGVHYSVPSCNGCKTFFRRALV----NKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKKEEERRVKEQTELSL
A0A0N4XW26/20-131          KREKIPEGTLCVVCADLASGIHYSVPSCNGCKTFFRRALV----NKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKKEEERRLKEQAELTL
A0A0D8X9B8/18-128          EREKIPEGTLCVVCSDLASGIHYSVPSCNGCKTFFRRALV----NKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDVGMDPKAIQHDRDKIRYTKALKKKKEEERRLKEQADLP-
A0A016USZ0/60-171          KREKIPEGTLCVVCADLASGIHYSVPSCNGCKTFFRRALV----NKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKKEEERRLREQAELSL
A0A016UV35/62-173          KREKIPEGTLCVVCADLASGIHYSVPSCNGCKTFFRRALV----NKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKKEEERRLREQAELSL
A0A016USC1/62-173          KREKIPEGTLCVVCADLASGIHYSVPSCNGCKTFFRRALV----NKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKKEEERRLREQAELSL
G0M732/21-130              KREKIPEGTLCVVCADLASGIHYSVASCNGCKTFFRRALV----NKQTFQCQFTGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKREEEKRLKETIIK--
A0A158QJS2/10-121          KREKIPEGTLCVVCADMASGIHYSVPSCNGCKTFFRRALV----NKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKKEEERRLKEQSELSL
E3M2H2/21-130              KREKIPEGTLCVVCSDLASGIHYSVASCNGCKTFFRRALV----NKQTFTCQFTGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDRDKIRYTKALKKKREEEKRLKEVIIK--
#=GC scorecons             59999999979999697999899996999999999999990000999997999699999999999999999999999899999999999999999999999799979879444422
#=GC scorecons_70          _*************_**********_**************____******************************************************************______
#=GC scorecons_80          _*************_**********_**************____*********_***********************************************_***_****______
#=GC scorecons_90          _********_****_*_********_**************____*****_***_***********************************************_***_**_*______
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