# STOCKHOLM 1.0 #=GF ID 3.30.470.20/FF/31249 #=GF DE D-alanine--D-alanine ligase B #=GF AC 3.30.470.20/FF/31249 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 78.042 #=GS Q89PS5/139-164_234-366 AC Q89PS5 #=GS Q89PS5/139-164_234-366 OS Bradyrhizobium diazoefficiens USDA 110 #=GS Q89PS5/139-164_234-366 DE D-alanine--D-alanine ligase B #=GS Q89PS5/139-164_234-366 DR GENE3D; a71cf4bc865d85d2693c60550854ab99/139-164_234-366; #=GS Q89PS5/139-164_234-366 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; #=GS Q89PS5/139-164_234-366 DR EC; 6.3.2.4; #=GS A5W0L8/214-352 AC A5W0L8 #=GS A5W0L8/214-352 OS Pseudomonas putida F1 #=GS A5W0L8/214-352 DE D-alanine--D-alanine ligase #=GS A5W0L8/214-352 DR GENE3D; 4c902c09088f12c96842f581e276d4ab/214-352; #=GS A5W0L8/214-352 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida; #=GS A5W0L8/214-352 DR EC; 6.3.2.4; #=GS A4YRU4/130-154_224-356 AC A4YRU4 #=GS A4YRU4/130-154_224-356 OS Bradyrhizobium sp. ORS 278 #=GS A4YRU4/130-154_224-356 DE D-alanine--D-alanine ligase #=GS A4YRU4/130-154_224-356 DR GENE3D; 082287d54cf442f552415346bc8b4cf7/130-154_224-356; #=GS A4YRU4/130-154_224-356 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp. ORS 278; #=GS A4YRU4/130-154_224-356 DR EC; 6.3.2.4; #=GS H0SI84/127-152_222-354 AC H0SI84 #=GS H0SI84/127-152_222-354 OS Bradyrhizobium sp. ORS 375 #=GS H0SI84/127-152_222-354 DE D-alanine--D-alanine ligase #=GS H0SI84/127-152_222-354 DR GENE3D; 734fbf359f6b9d5e20a0ad8ed24fa4e1/127-152_222-354; #=GS H0SI84/127-152_222-354 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp. ORS 375; #=GS H0SI84/127-152_222-354 DR EC; 6.3.2.4; #=GS M4ZA82/131-155_225-357 AC M4ZA82 #=GS M4ZA82/131-155_225-357 OS Bradyrhizobium oligotrophicum S58 #=GS M4ZA82/131-155_225-357 DE D-alanine--D-alanine ligase #=GS M4ZA82/131-155_225-357 DR GENE3D; 88aa698d2aac7e71bfd80e108f9de4b7/131-155_225-357; #=GS M4ZA82/131-155_225-357 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium oligotrophicum; #=GS M4ZA82/131-155_225-357 DR EC; 6.3.2.4; #=GS A5EMF5/129-154_224-356 AC A5EMF5 #=GS A5EMF5/129-154_224-356 OS Bradyrhizobium sp. BTAi1 #=GS A5EMF5/129-154_224-356 DE D-alanine--D-alanine ligase #=GS A5EMF5/129-154_224-356 DR GENE3D; a0d70ba5fd95711618667a357aa601d9/129-154_224-356; #=GS A5EMF5/129-154_224-356 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp. BTAi1; #=GS A5EMF5/129-154_224-356 DR EC; 6.3.2.4; #=GS I3V097/35-61_127-247 AC I3V097 #=GS I3V097/35-61_127-247 OS Pseudomonas putida ND6 #=GS I3V097/35-61_127-247 DE D-alanine--D-alanine ligase #=GS I3V097/35-61_127-247 DR GENE3D; e395c63ade99d5d6d211001884b0f292/35-61_127-247; #=GS I3V097/35-61_127-247 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida; #=GS I3V097/35-61_127-247 DR EC; 6.3.2.4; #=GS Q98JS0/127-152_221-353 AC Q98JS0 #=GS Q98JS0/127-152_221-353 OS Mesorhizobium loti MAFF303099 #=GS Q98JS0/127-152_221-353 DE D-alanine--D-alanine ligase A #=GS Q98JS0/127-152_221-353 DR GENE3D; 96fa45150bd87d34cf53df3984dd8a2f/127-152_221-353; #=GS Q98JS0/127-152_221-353 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium; Mesorhizobium loti; #=GS Q98JS0/127-152_221-353 DR EC; 6.3.2.4; #=GS B0UB90/124-148_218-353 AC B0UB90 #=GS B0UB90/124-148_218-353 OS Methylobacterium sp. 4-46 #=GS B0UB90/124-148_218-353 DE D-alanine--D-alanine ligase #=GS B0UB90/124-148_218-353 DR GENE3D; 181a2c4bf742e2801391543bf42ab3f5/124-148_218-353; #=GS B0UB90/124-148_218-353 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium; Methylobacterium sp. 4-46; #=GS B0UB90/124-148_218-353 DR EC; 6.3.2.4; #=GS A0A068D9B7/127-152_221-353 AC A0A068D9B7 #=GS A0A068D9B7/127-152_221-353 OS Mesorhizobium huakuii 7653R #=GS A0A068D9B7/127-152_221-353 DE D-alanine--D-alanine ligase #=GS A0A068D9B7/127-152_221-353 DR GENE3D; b9ef8257b792e3c5e481d0a0c671ddd6/127-152_221-353; #=GS A0A068D9B7/127-152_221-353 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium; Mesorhizobium huakuii; #=GS A0A068D9B7/127-152_221-353 DR EC; 6.3.2.4; #=GS H0TMS4/130-155_225-357 AC H0TMS4 #=GS H0TMS4/130-155_225-357 OS Bradyrhizobium sp. STM 3843 #=GS H0TMS4/130-155_225-357 DE D-alanine--D-alanine ligase #=GS H0TMS4/130-155_225-357 DR GENE3D; ec1bee225163e2f3286af44bc8b6f625/130-155_225-357; #=GS H0TMS4/130-155_225-357 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp. STM 3843; #=GS H0TMS4/130-155_225-357 DR EC; 6.3.2.4; #=GS Q88EV6/123-147_215-344 AC Q88EV6 #=GS Q88EV6/123-147_215-344 OS Pseudomonas putida KT2440 #=GS Q88EV6/123-147_215-344 DE D-alanine--D-alanine ligase A #=GS Q88EV6/123-147_215-344 DR GENE3D; 71a65e280130aa6450fec8c8814c8120/123-147_215-344; #=GS Q88EV6/123-147_215-344 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida; #=GS Q88EV6/123-147_215-344 DR EC; 6.3.2.4; #=GS U1HMV2/132-157_227-359 AC U1HMV2 #=GS U1HMV2/132-157_227-359 OS Bradyrhizobium sp. DFCI-1 #=GS U1HMV2/132-157_227-359 DE D-alanine--D-alanine ligase #=GS U1HMV2/132-157_227-359 DR GENE3D; c2d2435b1df6da88d7de8f43d631eb64/132-157_227-359; #=GS U1HMV2/132-157_227-359 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp. DFCI-1; #=GS U1HMV2/132-157_227-359 DR EC; 6.3.2.4; #=GF TC 221.5 3.5E-69 #=GF SQ 13 Q89PS5/139-164_234-366 GSSVTGSAVAMDKEVSKRLMRDAGLP-NGAREIECSVLEESTGDIRASGLGEIVRASEHGFYSYQAKYIDADGAALHIPADLPLLQARRLQELAVEVFNVLCCEGMARVDFFVQGD---EVFVNEANTLPGFTSSSMYPKLWEASGLSQTDLMDKLIAHAFAR------ A5W0L8/214-352 ---------------------------VCGREIECGVLELEEG-LMASVVGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTEEG--EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKERL A4YRU4/130-154_224-356 -GRVLGSAAAMDKDVAKRLLRDAGLP-APVREIECAVLEHADGQIKASELGEIVPANSHGFYSYEAKYTDANGAALHVPAQVEPAVAQRIRKMATEVFGALCCESLARVDFFVRGD---EIYVNEVNTLPGFTNISMYPKMWEAAGLPQPALMDELVAHALAR------ H0SI84/127-152_222-354 GDRVLGSAAAMDKDVAKRLLRDAGLP-SPVREIECAVLEHADGKVAASELGEIVPANSHGFYSYEAKYTDANGAALHVPAQVEPVLAARIRKMATEVFGVLCCEGLARVDVFVRGD---EVYVNEVNTLPGFTDISMYPKMWEATGLPQPALMDELIAHALAR------ M4ZA82/131-155_225-357 -GRVLGSAAAMDKDVAKRLLRDAGLP-TPVREIECAVLEHADGKVAASELGEIVPADSHGFYSYEAKYTDASGASLHVPAQLEPALSERIRKLATEVFGVLCCESLARVDFFVRGD---EVYVNEVNTLPGFTNISMYPKMWEATGLPQPALMDRLIAHALAR------ A5EMF5/129-154_224-356 GARVMGSAAAMDKDVAKRLLRDAGLP-SPVREIECAVLEHADGEVKASELGEIVPASSHGFYSYAAKYTDASGASLHVPAQVEPGLAQRIRKMATEVFGVLCCESLARVDFFVHGE---EVYVNEVNTLPGFTNISMYPKMWEATGLPQPALMDALIAHALAR------ I3V097/35-61_127-247 GSGVLGSAMAMDKDVTKRMVQSAGLVVVCGREIECGVLELEEG-LMASVVGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTEEG--EIILNEINTLPGFTSASMYPKMFECSGYPPPK------------------ Q98JS0/127-152_221-353 GCGILASAAAMDKDVAKRLLREAGL--ADGREIECSVLERADGSLTVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEAMARVDFFLRADG--SLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALAR------ B0UB90/124-148_218-353 -SGVIGSAAAMDKDVAKRLMRDAGLP-PRAREIEFAVLETAEGEVRVSPPGEIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGLARVDLFLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALIAHALAR------ A0A068D9B7/127-152_221-353 GCGVLASAAAMDKDVAKRLLREAGL--ADGREIECSVLERADGSLTVSPPGEIIPADKHGFYTYEAKYFDADGALVKVPADVPADVVARTSEMAARAFRALGCEAMARVDFFLRADG--SLLVNEVNTLPGFTDISMYAKALAAIGIGYSQVIDVLIGHALAR------ H0TMS4/130-155_225-357 GARVMGSAASMDKDVAKRLLRDAGLP-APVREIECAVLEDAGGEVSASELGEIVPAGQHGFYSYDAKYTDAGGASLHVPAQLDPALAARIRKLAVEVFGVLCCEGLARVDFFVSGG---EVYVNEVNTLPGFTNISMYPRMWEATGLPQPELMNRLIAHALAR------ Q88EV6/123-147_215-344 -SGVLGSAMAMDKDVTKRMVQSAGL--VCGREIECGVLELEEG-LMASVVGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTEEG--EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGL-------- U1HMV2/132-157_227-359 GSRVMGSAAGMDKDIAKRLLREAGLP-APIREIECSVLEDAEGHIRASQLGEIVPSDKHGFYSYDAKYLDAEGALLQVPADVPPAVADRIRELAIKTFRVLGCEGMARIDFFLHGE---EAFVNEANTLPGFTNISMYPRLWEASGLPQSALMDVLIGHALER------ #=GC scorecons 2346456645666664665454666204349999859993559153693599965543967949599936545637479636464554964466555954935564998979634610065469969999999459997854654945464655375465644000000 #=GC scorecons_70 ___*__**__*****_**____***_____*****_***___*___**__****____****_*_***_____*_*_***_*_*____*___**___*__*_____*******__*___*__***_*******__*****__*__*___*_____*____*________ #=GC scorecons_80 ______________________________*****_***___*____*__***_____*_**_*_***_______*_**_________*________*__*_____******___________**_*******__*****_____*_________*_____________ #=GC scorecons_90 ______________________________****__***___*____*__***_____*__*_*_***__________*_________*________*__*_____****_*___________**_*******__***_______*_______________________ //