# STOCKHOLM 1.0
#=GF ID 3.30.420.140/FF/3077
#=GF DE Putative Holliday junction resolvase
#=GF AC 3.30.420.140/FF/3077
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 63.010
#=GS Q46370/7-147       AC Q46370
#=GS Q46370/7-147       OS Chlamydia trachomatis D/UW-3/CX
#=GS Q46370/7-147       DE Putative pre-16S rRNA nuclease
#=GS Q46370/7-147       DR GENE3D; 8b7fd40df399189cc86c00c639f3f458/7-147; 
#=GS Q46370/7-147       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0F7XJ56/10-153  AC A0A0F7XJ56
#=GS A0A0F7XJ56/10-153  OS Chlamydia pneumoniae
#=GS A0A0F7XJ56/10-153  DE Putative pre-16S rRNA nuclease
#=GS A0A0F7XJ56/10-153  DR GENE3D; 0ed06a1258a6955d239caaac631806e9/10-153; 
#=GS A0A0F7XJ56/10-153  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pneumoniae; 
#=GS Q254W0/7-148       AC Q254W0
#=GS Q254W0/7-148       OS Chlamydia felis Fe/C-56
#=GS Q254W0/7-148       DE Putative pre-16S rRNA nuclease
#=GS Q254W0/7-148       DR GENE3D; 29f221d7397b49fb8c430bf9a8dc3197/7-148; 
#=GS Q254W0/7-148       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia felis; 
#=GS Q5L5S0/7-148       AC Q5L5S0
#=GS Q5L5S0/7-148       OS Chlamydia abortus S26/3
#=GS Q5L5S0/7-148       DE Putative pre-16S rRNA nuclease
#=GS Q5L5S0/7-148       DR GENE3D; 545211da75d6acf36ac71a6c0df1b497/7-148; 
#=GS Q5L5S0/7-148       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia abortus; 
#=GS A0A1M7V3H6/7-148   AC A0A1M7V3H6
#=GS A0A1M7V3H6/7-148   OS Chlamydia abortus
#=GS A0A1M7V3H6/7-148   DE Holliday junction resolvase-like protein
#=GS A0A1M7V3H6/7-148   DR GENE3D; 545211da75d6acf36ac71a6c0df1b497/7-148; 
#=GS A0A1M7V3H6/7-148   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia abortus; 
#=GS A0A0E2IZH8/7-148   AC A0A0E2IZH8
#=GS A0A0E2IZH8/7-148   OS Chlamydia psittaci 02DC14
#=GS A0A0E2IZH8/7-148   DE Putative pre-16S rRNA nuclease
#=GS A0A0E2IZH8/7-148   DR GENE3D; 64a3a79faf1b9fbf5bb84a4652db092b/7-148; 
#=GS A0A0E2IZH8/7-148   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; 
#=GS A0A1D3CN05/7-148   AC A0A1D3CN05
#=GS A0A1D3CN05/7-148   OS Chlamydia psittaci
#=GS A0A1D3CN05/7-148   DE Putative pre-16S rRNA nuclease
#=GS A0A1D3CN05/7-148   DR GENE3D; 64a3a79faf1b9fbf5bb84a4652db092b/7-148; 
#=GS A0A1D3CN05/7-148   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; 
#=GS A0A0E2IZA7/7-148   AC A0A0E2IZA7
#=GS A0A0E2IZA7/7-148   OS Chlamydia psittaci 01DC11
#=GS A0A0E2IZA7/7-148   DE Putative pre-16S rRNA nuclease
#=GS A0A0E2IZA7/7-148   DR GENE3D; 64a3a79faf1b9fbf5bb84a4652db092b/7-148; 
#=GS A0A0E2IZA7/7-148   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; 
#=GS S7IJC5/7-148       AC S7IJC5
#=GS S7IJC5/7-148       OS Chlamydia psittaci 08-2626_L3
#=GS S7IJC5/7-148       DE Putative pre-16S rRNA nuclease
#=GS S7IJC5/7-148       DR GENE3D; 64a3a79faf1b9fbf5bb84a4652db092b/7-148; 
#=GS S7IJC5/7-148       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; 
#=GS Q9Z8U7/7-150       AC Q9Z8U7
#=GS Q9Z8U7/7-150       OS Chlamydia pneumoniae
#=GS Q9Z8U7/7-150       DE Putative pre-16S rRNA nuclease
#=GS Q9Z8U7/7-150       DR GENE3D; 6798cb9b6a70e9c640a8dbb4d2ebaa95/7-150; 
#=GS Q9Z8U7/7-150       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pneumoniae; 
#=GS G4NND3/7-147       AC G4NND3
#=GS G4NND3/7-147       OS Chlamydia trachomatis A2497
#=GS G4NND3/7-147       DE Putative pre-16S rRNA nuclease
#=GS G4NND3/7-147       DR GENE3D; 8b7fd40df399189cc86c00c639f3f458/7-147; 
#=GS G4NND3/7-147       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0E9DHI8/7-147   AC A0A0E9DHI8
#=GS A0A0E9DHI8/7-147   OS Chlamydia trachomatis
#=GS A0A0E9DHI8/7-147   DE Putative pre-16S rRNA nuclease
#=GS A0A0E9DHI8/7-147   DR GENE3D; 8b7fd40df399189cc86c00c639f3f458/7-147; 
#=GS A0A0E9DHI8/7-147   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS Q3KMH8/7-147       AC Q3KMH8
#=GS Q3KMH8/7-147       OS Chlamydia trachomatis A/HAR-13
#=GS Q3KMH8/7-147       DE Putative pre-16S rRNA nuclease
#=GS Q3KMH8/7-147       DR GENE3D; 8b7fd40df399189cc86c00c639f3f458/7-147; 
#=GS Q3KMH8/7-147       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A1J0NLQ4/7-147   AC A0A1J0NLQ4
#=GS A0A1J0NLQ4/7-147   OS Chlamydia trachomatis
#=GS A0A1J0NLQ4/7-147   DE Putative pre-16S rRNA nuclease
#=GS A0A1J0NLQ4/7-147   DR GENE3D; b13e33ef6dd3d52e1423840a7407bed4/7-147; 
#=GS A0A1J0NLQ4/7-147   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS Q822T1/9-151       AC Q822T1
#=GS Q822T1/9-151       OS Chlamydophila caviae GPIC
#=GS Q822T1/9-151       DE Putative pre-16S rRNA nuclease
#=GS Q822T1/9-151       DR GENE3D; be7ec46f6816938675a4548dc73e5c94/9-151; 
#=GS Q822T1/9-151       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia caviae; 
#=GS B0B9T4/7-147       AC B0B9T4
#=GS B0B9T4/7-147       OS Chlamydia trachomatis 434/Bu
#=GS B0B9T4/7-147       DE Putative pre-16S rRNA nuclease
#=GS B0B9T4/7-147       DR GENE3D; d3b06510c6d8ed2b4f4ce9bdf60b28b1/7-147; 
#=GS B0B9T4/7-147       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0E9FWF9/7-147   AC A0A0E9FWF9
#=GS A0A0E9FWF9/7-147   OS Chlamydia trachomatis
#=GS A0A0E9FWF9/7-147   DE Putative pre-16S rRNA nuclease
#=GS A0A0E9FWF9/7-147   DR GENE3D; d3b06510c6d8ed2b4f4ce9bdf60b28b1/7-147; 
#=GS A0A0E9FWF9/7-147   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS B0BBG4/7-147       AC B0BBG4
#=GS B0BBG4/7-147       OS Chlamydia trachomatis L2b/UCH-1/proctitis
#=GS B0BBG4/7-147       DE Putative pre-16S rRNA nuclease
#=GS B0BBG4/7-147       DR GENE3D; d3b06510c6d8ed2b4f4ce9bdf60b28b1/7-147; 
#=GS B0BBG4/7-147       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0C5WT95/7-147   AC A0A0C5WT95
#=GS A0A0C5WT95/7-147   OS Chlamydia muridarum
#=GS A0A0C5WT95/7-147   DE Putative pre-16S rRNA nuclease
#=GS A0A0C5WT95/7-147   DR GENE3D; 205134b52425203c40b16919335dde09/7-147; 
#=GS A0A0C5WT95/7-147   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia muridarum; 
#=GS Q9PKK9/7-147       AC Q9PKK9
#=GS Q9PKK9/7-147       OS Chlamydia muridarum str. Nigg
#=GS Q9PKK9/7-147       DE Putative pre-16S rRNA nuclease
#=GS Q9PKK9/7-147       DR GENE3D; 205134b52425203c40b16919335dde09/7-147; 
#=GS Q9PKK9/7-147       DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia muridarum; 
#=GF TC 259.2 5.9E-81
#=GF SQ 20
Q46370/7-147               QQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQRKNPSDSLAATLILSSFLDS--RKL-
A0A0F7XJ56/10-153          CKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRKGKTDSLAATLILTSFLDSLPKKLT
Q254W0/7-148               KKIFLGVDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQSLAKIILEREVSCVVLGNPIPMQIGQKSSLQEEILKISSLIQEFCHVDVVLWDERLSSAQAERMLKCDCGLSRKQRKGKTDSVAATLILTNFLESSPSI--
Q5L5S0/7-148               AKVFLGVDYGERRIGLAYAAYPLGISLPIGFIATGKTLEATAKLLVGIIQERRVSTVVLGNPLPMQKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDSIAATLILTSFLEHSPRL--
A0A1M7V3H6/7-148           AKVFLGVDYGERRIGLAYAAYPLGISLPIGFIATGKTLEATAKLLVGIIQERRVSTVVLGNPLPMQKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDSIAATLILTSFLEHSPRL--
A0A0E2IZH8/7-148           AKVFLGVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIPMQKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTDSIAANLILTSFLESSPHL--
A0A1D3CN05/7-148           AKVFLGVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIPMQKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTDSIAANLILTSFLESSPHL--
A0A0E2IZA7/7-148           AKVFLGVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIPMQKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTDSIAANLILTSFLESSPHL--
S7IJC5/7-148               AKVFLGVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIPMQKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTDSIAANLILTSFLESSPHL--
Q9Z8U7/7-150               CKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRKGKTDSLAATLILTSFLDSLPKKLT
G4NND3/7-147               QQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQRKNPSDSLAATLILSSFLDS--RKL-
A0A0E9DHI8/7-147           QQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQRKNPSDSLAATLILSSFLDS--RKL-
Q3KMH8/7-147               QQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQRKNPSDSLAATLILSSFLDS--RKL-
A0A1J0NLQ4/7-147           QQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVMTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQRKNPSDSLAATLILSSFLDS--RKL-
Q822T1/9-151               EKTFLGIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATAKILFNIIQERSVSCVVLGNPIPMQKGQKSALQEEITKLSSLIQESCGVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDTIAATLILTSFLESSPPKI-
B0B9T4/7-147               QQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQRKNSSDSLAATLILSSFLDS--RKL-
A0A0E9FWF9/7-147           QQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQRKNSSDSLAATLILSSFLDS--RKL-
B0BBG4/7-147               QQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQRKNSSDSLAATLILSSFLDS--RKL-
A0A0C5WT95/7-147           KEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRKQRKNSSDSLAATLILSSFLDS--RKL-
Q9PKK9/7-147               KEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRKQRKNSSDSLAATLILSSFLDS--RKL-
#=GC scorecons             365899799957999997965994759999475655584579559549947948569969996999854496695784486566774546888999999997799999949999699599546986997999689977125430
#=GC scorecons_70          ___*******_*********_**_*_****_*_*___*__**__*__**_**_*_************___****_**__*__*_**___********************_*******_**___*********_*****______
#=GC scorecons_80          ___***_***_********__**_*_****_*_____*__**__*__**_**_*__**_***_****___*__*_**__*__________*******************_****_**_**___**_**_***_***_*______
#=GC scorecons_90          ___***_***__*****_*__**___****_______*___*__*__**__*_*__**_***_***____*__*__*__*__________***********__******_****_**_**___**_**_***_***________
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