# STOCKHOLM 1.0 #=GF ID 3.30.420.10/FF/45893 #=GF DE Truncated Pr160 gag-pol polyprotein #=GF AC 3.30.420.10/FF/45893 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 83.393 #=GS 1a5vA00/1-158 AC O92956 #=GS 1a5vA00/1-158 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1a5vA00/1-158 DE Gag-Pro-Pol polyprotein #=GS 1a5vA00/1-158 DR CATH; 1a5v; A:54-199; #=GS 1a5vA00/1-158 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1a5vA00/1-158 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS O39643/621-781 AC O39643 #=GS O39643/621-781 OS Rous-associated virus type 2 #=GS O39643/621-781 DE Reverse transcriptase #=GS O39643/621-781 DR GENE3D; 25a35b3fe75e46d9d5c4a95e39f1ee67/621-781; #=GS O39643/621-781 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS O39643/621-781 DR EC; 2.7.7.49; #=GS P03975/406-533 AC P03975 #=GS P03975/406-533 OS Mus musculus #=GS P03975/406-533 DE IgE-binding protein #=GS P03975/406-533 DR GENE3D; ccc46de517f54781b65c447ddabce729/406-533; #=GS P03975/406-533 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS 1asvA00/1-162 AC O92956 #=GS 1asvA00/1-162 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1asvA00/1-162 DE Gag-Pro-Pol polyprotein #=GS 1asvA00/1-162 DR CATH; 1asv; A:54-199; #=GS 1asvA00/1-162 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1asvA00/1-162 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1aswA00/1-162 AC O92956 #=GS 1aswA00/1-162 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1aswA00/1-162 DE Gag-Pro-Pol polyprotein #=GS 1aswA00/1-162 DR CATH; 1asw; A:50-201; #=GS 1aswA00/1-162 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1aswA00/1-162 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c0mA01/1-167 AC P03354 #=GS 1c0mA01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c0mA01/1-167 DE Gag-Pro-Pol polyprotein #=GS 1c0mA01/1-167 DR CATH; 1c0m; A:49-215; #=GS 1c0mA01/1-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c0mA01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1cxqA00/1-162 AC O92956 #=GS 1cxqA00/1-162 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1cxqA00/1-162 DE Gag-Pro-Pol polyprotein #=GS 1cxqA00/1-162 DR CATH; 1cxq; A:52-198; #=GS 1cxqA00/1-162 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1cxqA00/1-162 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1cz9A00/1-162 AC O92956 #=GS 1cz9A00/1-162 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1cz9A00/1-162 DE Gag-Pro-Pol polyprotein #=GS 1cz9A00/1-162 DR CATH; 1cz9; A:59-197; #=GS 1cz9A00/1-162 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1cz9A00/1-162 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vsdA00/1-152 AC O92956 #=GS 1vsdA00/1-152 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vsdA00/1-152 DE Gag-Pro-Pol polyprotein #=GS 1vsdA00/1-152 DR CATH; 1vsd; A:54-199; #=GS 1vsdA00/1-152 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vsdA00/1-152 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vseA00/1-152 AC O92956 #=GS 1vseA00/1-152 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vseA00/1-152 DE Gag-Pro-Pol polyprotein #=GS 1vseA00/1-152 DR CATH; 1vse; A:54-199; #=GS 1vseA00/1-152 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vseA00/1-152 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vshA00/1-152 AC O92956 #=GS 1vshA00/1-152 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vshA00/1-152 DE Gag-Pro-Pol polyprotein #=GS 1vshA00/1-152 DR CATH; 1vsh; A:54-199; #=GS 1vshA00/1-152 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vshA00/1-152 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vsiA00/1-152 AC O92956 #=GS 1vsiA00/1-152 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vsiA00/1-152 DE Gag-Pro-Pol polyprotein #=GS 1vsiA00/1-152 DR CATH; 1vsi; A:54-199; #=GS 1vsiA00/1-152 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vsiA00/1-152 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vsjA00/1-152 AC O92956 #=GS 1vsjA00/1-152 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vsjA00/1-152 DE Gag-Pro-Pol polyprotein #=GS 1vsjA00/1-152 DR CATH; 1vsj; A:54-199; #=GS 1vsjA00/1-152 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vsjA00/1-152 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 3o4nA00/1-150 AC O92956 #=GS 3o4nA00/1-150 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 3o4nA00/1-150 DE Gag-Pro-Pol polyprotein #=GS 3o4nA00/1-150 DR CATH; 3o4n; A:59-199; #=GS 3o4nA00/1-150 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 3o4nA00/1-150 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 3o4qA00/1-150 AC O92956 #=GS 3o4qA00/1-150 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 3o4qA00/1-150 DE Gag-Pro-Pol polyprotein #=GS 3o4qA00/1-150 DR CATH; 3o4q; A:55-199; #=GS 3o4qA00/1-150 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 3o4qA00/1-150 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 4fw1A01/1-167 AC P03354 #=GS 4fw1A01/1-167 OS Rous sarcoma virus - Prague C #=GS 4fw1A01/1-167 DE Gag-Pro-Pol polyprotein #=GS 4fw1A01/1-167 DR CATH; 4fw1; A:52-215; #=GS 4fw1A01/1-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 4fw1A01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 4fw2A01/52-215 AC P03354 #=GS 4fw2A01/52-215 OS Rous sarcoma virus - Prague C #=GS 4fw2A01/52-215 DE Gag-Pro-Pol polyprotein #=GS 4fw2A01/52-215 DR CATH; 4fw2; A:52-215; #=GS 4fw2A01/52-215 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 4fw2A01/52-215 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1a5wA00/1-158 AC O92956 #=GS 1a5wA00/1-158 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1a5wA00/1-158 DE Gag-Pro-Pol polyprotein #=GS 1a5wA00/1-158 DR CATH; 1a5w; A:54-199; #=GS 1a5wA00/1-158 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1a5wA00/1-158 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1a5xA00/1-158 AC O92956 #=GS 1a5xA00/1-158 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1a5xA00/1-158 DE Gag-Pro-Pol polyprotein #=GS 1a5xA00/1-158 DR CATH; 1a5x; A:54-199; #=GS 1a5xA00/1-158 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1a5xA00/1-158 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1asuA00/1-162 AC O92956 #=GS 1asuA00/1-162 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1asuA00/1-162 DE Gag-Pro-Pol polyprotein #=GS 1asuA00/1-162 DR CATH; 1asu; A:48-209; #=GS 1asuA00/1-162 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1asuA00/1-162 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c0mB01/1-167 AC P03354 #=GS 1c0mB01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c0mB01/1-167 DE Gag-Pro-Pol polyprotein #=GS 1c0mB01/1-167 DR CATH; 1c0m; B:54-215; #=GS 1c0mB01/1-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c0mB01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c0mC01/1-167 AC P03354 #=GS 1c0mC01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c0mC01/1-167 DE Gag-Pro-Pol polyprotein #=GS 1c0mC01/1-167 DR CATH; 1c0m; C:49-215; #=GS 1c0mC01/1-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c0mC01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c0mD01/1-167 AC P03354 #=GS 1c0mD01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c0mD01/1-167 DE Gag-Pro-Pol polyprotein #=GS 1c0mD01/1-167 DR CATH; 1c0m; D:54-215; #=GS 1c0mD01/1-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c0mD01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c1aA01/1-167 AC P03354 #=GS 1c1aA01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c1aA01/1-167 DE Gag-Pro-Pol polyprotein #=GS 1c1aA01/1-167 DR CATH; 1c1a; A:52-215; #=GS 1c1aA01/1-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c1aA01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c1aB01/1-167 AC P03354 #=GS 1c1aB01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c1aB01/1-167 DE Gag-Pro-Pol polyprotein #=GS 1c1aB01/1-167 DR CATH; 1c1a; B:55-215; #=GS 1c1aB01/1-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c1aB01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1cxuA00/1-162 AC O92956 #=GS 1cxuA00/1-162 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1cxuA00/1-162 DE Gag-Pro-Pol polyprotein #=GS 1cxuA00/1-162 DR CATH; 1cxu; A:56-198; #=GS 1cxuA00/1-162 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1cxuA00/1-162 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1czbA00/1-162 AC O92956 #=GS 1czbA00/1-162 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1czbA00/1-162 DE Gag-Pro-Pol polyprotein #=GS 1czbA00/1-162 DR CATH; 1czb; A:52-198; #=GS 1czbA00/1-162 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1czbA00/1-162 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vsfA00/1-152 AC O92956 #=GS 1vsfA00/1-152 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vsfA00/1-152 DE Gag-Pro-Pol polyprotein #=GS 1vsfA00/1-152 DR CATH; 1vsf; A:54-199; #=GS 1vsfA00/1-152 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vsfA00/1-152 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vskA00/1-146 AC O92956 #=GS 1vskA00/1-146 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vskA00/1-146 DE Gag-Pro-Pol polyprotein #=GS 1vskA00/1-146 DR CATH; 1vsk; A:54-199; #=GS 1vskA00/1-146 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vskA00/1-146 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vslA00/1-146 AC O92956 #=GS 1vslA00/1-146 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vslA00/1-146 DE Gag-Pro-Pol polyprotein #=GS 1vslA00/1-146 DR CATH; 1vsl; A:54-199; #=GS 1vslA00/1-146 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vslA00/1-146 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1vsmA00/1-146 AC O92956 #=GS 1vsmA00/1-146 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1vsmA00/1-146 DE Gag-Pro-Pol polyprotein #=GS 1vsmA00/1-146 DR CATH; 1vsm; A:54-199; #=GS 1vsmA00/1-146 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1vsmA00/1-146 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 3o4nB00/1-150 AC O92956 #=GS 3o4nB00/1-150 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 3o4nB00/1-150 DE Gag-Pro-Pol polyprotein #=GS 3o4nB00/1-150 DR CATH; 3o4n; B:58-199; #=GS 3o4nB00/1-150 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 3o4nB00/1-150 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 4fw1B01/1-167 AC P03354 #=GS 4fw1B01/1-167 OS Rous sarcoma virus - Prague C #=GS 4fw1B01/1-167 DE Gag-Pro-Pol polyprotein #=GS 4fw1B01/1-167 DR CATH; 4fw1; B:54-215; #=GS 4fw1B01/1-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 4fw1B01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 4fw2B01/54-215 AC P03354 #=GS 4fw2B01/54-215 OS Rous sarcoma virus - Prague C #=GS 4fw2B01/54-215 DE Gag-Pro-Pol polyprotein #=GS 4fw2B01/54-215 DR CATH; 4fw2; B:54-215; #=GS 4fw2B01/54-215 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 4fw2B01/54-215 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q04095/1329-1489 AC Q04095 #=GS Q04095/1329-1489 OS Rous sarcoma virus (strain Schmidt-Ruppin A) #=GS Q04095/1329-1489 DE Gag-Pro-Pol polyprotein #=GS Q04095/1329-1489 DR GENE3D; 08a95ff0af5ea705e30d3c3ea0f0b939/1329-1489; #=GS Q04095/1329-1489 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS Q04095/1329-1489 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS O92956/1329-1489 AC O92956 #=GS O92956/1329-1489 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS O92956/1329-1489 DE Gag-Pro-Pol polyprotein #=GS O92956/1329-1489 DR GENE3D; 37e0dffd15fdd823a62a7ad9972c557f/1329-1489; #=GS O92956/1329-1489 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS O92956/1329-1489 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q7SQ98/621-781 AC Q7SQ98 #=GS Q7SQ98/621-781 OS Avian leukosis virus #=GS Q7SQ98/621-781 DE Pol polyprotein #=GS Q7SQ98/621-781 DR GENE3D; 474e106fec8ea474a5d1f8b4a57cb3c1/621-781; #=GS Q7SQ98/621-781 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS Q7SQ98/621-781 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P03354/1329-1495 AC P03354 #=GS P03354/1329-1495 OS Rous sarcoma virus - Prague C #=GS P03354/1329-1495 DE Gag-Pro-Pol polyprotein #=GS P03354/1329-1495 DR GENE3D; f36623226a6306d750289dede37689a2/1329-1495; #=GS P03354/1329-1495 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS P03354/1329-1495 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS B8X346/621-781 AC B8X346 #=GS B8X346/621-781 OS Rous sarcoma virus #=GS B8X346/621-781 DE Reverse transcriptase #=GS B8X346/621-781 DR GENE3D; 916536de741db2d16de21df9fbe79b60/621-781; #=GS B8X346/621-781 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS B8X346/621-781 DR EC; 2.7.7.49; #=GS Q04099/213-376 AC Q04099 #=GS Q04099/213-376 OS Gallus gallus #=GS Q04099/213-376 DE Pol protein #=GS Q04099/213-376 DR GENE3D; bddd6c414fe67a8495af46cfb7f52814/213-376; #=GS Q04099/213-376 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; #=GS Q98WV8/770-930 AC Q98WV8 #=GS Q98WV8/770-930 OS Avian leukosis virus #=GS Q98WV8/770-930 DE Gag polyprotein #=GS Q98WV8/770-930 DR GENE3D; 05e88d866f348cc96f032545a56c456d/770-930; #=GS Q98WV8/770-930 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS G3FBH7/49-216 AC G3FBH7 #=GS G3FBH7/49-216 OS Rous-associated virus type 1 #=GS G3FBH7/49-216 DE Integrase #=GS G3FBH7/49-216 DR GENE3D; 10fffdc3715b358ad4668a8bead60a84/49-216; #=GS G3FBH7/49-216 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS Q8AFM1/38-195 AC Q8AFM1 #=GS Q8AFM1/38-195 OS Avian leukosis virus #=GS Q8AFM1/38-195 DE Pol protein #=GS Q8AFM1/38-195 DR GENE3D; 368fd0297c9f5df0c90e92d20e4bb6fc/38-195; #=GS Q8AFM1/38-195 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS A0A075DWD5/118-278 AC A0A075DWD5 #=GS A0A075DWD5/118-278 OS Tasmanian devil retrovirus #=GS A0A075DWD5/118-278 DE Polymerase #=GS A0A075DWD5/118-278 DR GENE3D; 5721aa24c9634080d0b8fc19ce6889cf/118-278; #=GS A0A075DWD5/118-278 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Tasmanian devil retrovirus; #=GS A4LA61/518-678 AC A4LA61 #=GS A4LA61/518-678 OS Avian leukosis virus #=GS A4LA61/518-678 DE Pol polyprotein #=GS A4LA61/518-678 DR GENE3D; 8585bac3f807a07161cfef7ee3b9861b/518-678; #=GS A4LA61/518-678 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS Q05532/631-793 AC Q05532 #=GS Q05532/631-793 OS Lymphoproliferative disease virus #=GS Q05532/631-793 DE Reverse Transcriptase-and Integrase #=GS Q05532/631-793 DR GENE3D; 9470383d7d374cae4c6a63585e53594a/631-793; #=GS Q05532/631-793 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Lymphoproliferative disease virus; #=GS Q6A2B3/632-795 AC Q6A2B3 #=GS Q6A2B3/632-795 OS Avian endogenous retrovirus EAV-HP #=GS Q6A2B3/632-795 DE Reverse transcriptase/integrase #=GS Q6A2B3/632-795 DR GENE3D; d75b6b34bddbb983aa209eb5640a6485/632-795; #=GS Q6A2B3/632-795 DR ORG; Viruses; Retroviridae; Avian endogenous retrovirus EAV-HP; #=GF TC 169.3 4.8E-53 #=GF SQ 47 1a5vA00/1-158 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ O39643/621-781 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPASKQGELLAKAMYALNHFERGENTKTPV------ P03975/406-533 --------------------------------------------TKECRAVHSPKKEQRLTRLAQGLSRAWGKPRLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKAYLIKQKRG-TFEETVPRAPRVS-VSLALFTLNFLNIDAHGHTAAERHVQS 1asvA00/1-162 PLREPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSXFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1aswA00/1-162 PLREPRGLGPL-QIWQTDFTLEPRXAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAXVERANRLLKDKIRVLAEGDGFXKRIPTSKQGELLAKAXYALNHFERGENTKTNL------ 1c0mA01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1cxqA00/1-162 PLREGRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1cz9A00/1-162 PLREGRGLGPL-QIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1vsdA00/1-152 PLR--EGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSXFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL-------------- 1vseA00/1-152 PLR--EGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL-------------- 1vshA00/1-152 PLR--EGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSXFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL-------------- 1vsiA00/1-152 PLR--EGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSXFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL-------------- 1vsjA00/1-152 PLR--EGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSXFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL-------------- 3o4nA00/1-150 --GSGRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPASKQGELLAKAMYALNHF---------------- 3o4qA00/1-150 --GSGRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSXFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHF---------------- 4fw1A01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGDAFTSKSTREWLARWGIAHTTGIPGNSQGQAMVCRANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 4fw2A01/52-215 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1a5wA00/1-158 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1a5xA00/1-158 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1asuA00/1-162 PLREPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1c0mB01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c0mC01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c0mD01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c1aA01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c1aB01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1cxuA00/1-162 PLREGRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1czbA00/1-162 PLREGRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1vsfA00/1-152 PLR--EGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL-------------- 1vskA00/1-146 ------GLGPL-QIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHF---------------- 1vslA00/1-146 ------GLGPL-QIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHF---------------- 1vsmA00/1-146 ------GLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHF---------------- 3o4nB00/1-150 --GSGRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPASKQGELLAKAMYALNHF---------------- 4fw1B01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGDAFTSKSTREWLARWGIAHTTGIPGNSQGQAMVCRANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 4fw2B01/54-215 ------GLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP Q04095/1329-1489 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPI------ O92956/1329-1489 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPASKQGELLAKAMYALNHFERGENTKTPV------ Q7SQ98/621-781 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPI------ P03354/1329-1495 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRP B8X346/621-781 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATVIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPI------ Q04099/213-376 ----PRGIAPL-DVWQTDFTLEPRLAPRSWLAVTVDTASTVIVATQHGRANSSAAQHHWSVCVA-----TLGLPSHIKTDNGSCFISRSTKEWLARWGITHSTGIPGNSQGQAIVERANRLLKEKLRVLGEGENYRGKIPVSQQGELLARALSALYHFDRGENHRTPMQKHWQP Q98WV8/770-930 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPI------ G3FBH7/49-216 -GVNPRGLGPLCQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPASKQGELLAKAMYALNHFERGENTKTPVQKHWRP Q8AFM1/38-195 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSLSQAMVERANRLLKDKIRVLAERDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPI------ A0A075DWD5/118-278 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKRGELLAKAMYALNHFERGENTKTPI------ A4LA61/518-678 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA-----VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPI------ Q05532/631-793 ----PRGLEPN-QIWQTDFTMYPPFRPNHWLAVTVDTYSGVIVATAHRGTKSRHAIHHWTAAIA-----YLGRPSVIKTDNGSAFTSKAATAWAQRWHITLKHGIAYNSQGQAIVERANRTLKARLEALGEGEGWGARVPPEHQPELLYRALYSMNFFAR-STEQTSVARHWSH Q6A2B3/632-795 ----PRGVGPL-QIWQTDFTWEDRFSPRRWLAVTVDTASTALVATQHAKANSTSAQAHWAVAIA-----ILGLPAQIKTDNGSCFTSRSTQEWLSRWGIQHVTGIPGNSQGQAIVERANRLLKDKIRVLGEGEGYKDKIPVGRQPEILARALYALNHFERGDAKRTPVEKHWQP #=GC scorecons 011134766760667776776666567657777777767566759776766766677876777900000679796689999974889776677668778686898869788977989979799667667678677567795667676876977788754433333422111111 #=GC scorecons_70 ______**_**_********__**__**_**********__**_********_*_*********_____******_*******_*****************_*********************************_****_****************_________________ #=GC scorecons_80 ____________________________________________***_*__*____***_*_**______**_*__*******_****___**__**_*_*_****_******_******_**__*__*_**_**___**___*_*_*__*_*****_________________ #=GC scorecons_90 ____________________________________________*____________*_____*_______*_*___*****__***___________*_*_**_*_*_***__****_*_**________*_______*__________*___**__________________ //