# STOCKHOLM 1.0
#=GF ID 3.30.40.10/FF/60166
#=GF DE Homeodomain transcription factor
#=GF AC 3.30.40.10/FF/60166
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 45.473
#=GS Q04996/253-321      AC Q04996
#=GS Q04996/253-321      OS Arabidopsis thaliana
#=GS Q04996/253-321      DE Homeobox protein HAT3.1
#=GS Q04996/253-321      DR GENE3D; c3abba0549e002170fbf75923685105c/253-321; 
#=GS Q04996/253-321      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q04996/253-321      DR GO; GO:0003677; GO:0003700; GO:0043565; GO:0045893; 
#=GS A0A1D6FTH1/167-236  AC A0A1D6FTH1
#=GS A0A1D6FTH1/167-236  OS Zea mays
#=GS A0A1D6FTH1/167-236  DE Uncharacterized protein
#=GS A0A1D6FTH1/167-236  DR GENE3D; 0e16c105c1229913ca583d6ebdccca47/167-236; 
#=GS A0A1D6FTH1/167-236  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6FTG8/167-236  AC A0A1D6FTG8
#=GS A0A1D6FTG8/167-236  OS Zea mays
#=GS A0A1D6FTG8/167-236  DE Uncharacterized protein
#=GS A0A1D6FTG8/167-236  DR GENE3D; 126fc1ee67c51175ae08a14df4f4c66a/167-236; 
#=GS A0A1D6FTG8/167-236  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS K3Z497/157-227      AC K3Z497
#=GS K3Z497/157-227      OS Setaria italica
#=GS K3Z497/157-227      DE Uncharacterized protein
#=GS K3Z497/157-227      DR GENE3D; 25b2306e67cf5d3f5aa5a5f7807dbca8/157-227; 
#=GS K3Z497/157-227      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; 
#=GS A0A1D6FTH2/118-187  AC A0A1D6FTH2
#=GS A0A1D6FTH2/118-187  OS Zea mays
#=GS A0A1D6FTH2/118-187  DE Uncharacterized protein
#=GS A0A1D6FTH2/118-187  DR GENE3D; 53fecfee0c4cfe570bfd4770cc9d2e49/118-187; 
#=GS A0A1D6FTH2/118-187  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAV3/195-265  AC A0A1D6MAV3
#=GS A0A1D6MAV3/195-265  OS Zea mays
#=GS A0A1D6MAV3/195-265  DE Uncharacterized protein
#=GS A0A1D6MAV3/195-265  DR GENE3D; 6aa895ebeb6dab12932355ed87bc43a9/195-265; 
#=GS A0A1D6MAV3/195-265  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1B6P9P1/217-287  AC A0A1B6P9P1
#=GS A0A1B6P9P1/217-287  OS Sorghum bicolor
#=GS A0A1B6P9P1/217-287  DE Uncharacterized protein
#=GS A0A1B6P9P1/217-287  DR GENE3D; 73e9a395f08e06ed08c680f92a5e420b/217-287; 
#=GS A0A1B6P9P1/217-287  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; 
#=GS A0A1D6MAV9/195-265  AC A0A1D6MAV9
#=GS A0A1D6MAV9/195-265  OS Zea mays
#=GS A0A1D6MAV9/195-265  DE Uncharacterized protein
#=GS A0A1D6MAV9/195-265  DR GENE3D; 8c7f4e7e7e4d2f3e23a8fab7644ce92c/195-265; 
#=GS A0A1D6MAV9/195-265  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAV7/195-265  AC A0A1D6MAV7
#=GS A0A1D6MAV7/195-265  OS Zea mays
#=GS A0A1D6MAV7/195-265  DE Uncharacterized protein
#=GS A0A1D6MAV7/195-265  DR GENE3D; 90a045f58b15bbe652e696c6159818ce/195-265; 
#=GS A0A1D6MAV7/195-265  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6FTG9/166-236  AC A0A1D6FTG9
#=GS A0A1D6FTG9/166-236  OS Zea mays
#=GS A0A1D6FTG9/166-236  DE Uncharacterized protein
#=GS A0A1D6FTG9/166-236  DR GENE3D; 982cbf2041519fc775a029888ad29fbb/166-236; 
#=GS A0A1D6FTG9/166-236  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAU6/196-266  AC A0A1D6MAU6
#=GS A0A1D6MAU6/196-266  OS Zea mays
#=GS A0A1D6MAU6/196-266  DE Uncharacterized protein
#=GS A0A1D6MAU6/196-266  DR GENE3D; 9be2f231c6e1576ee43cbe1d7ae48ebf/196-266; 
#=GS A0A1D6MAU6/196-266  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAU7/167-237  AC A0A1D6MAU7
#=GS A0A1D6MAU7/167-237  OS Zea mays
#=GS A0A1D6MAU7/167-237  DE Uncharacterized protein
#=GS A0A1D6MAU7/167-237  DR GENE3D; 9fe8718aa53783267d992573196bfe68/167-237; 
#=GS A0A1D6MAU7/167-237  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAV8/166-236  AC A0A1D6MAV8
#=GS A0A1D6MAV8/166-236  OS Zea mays
#=GS A0A1D6MAV8/166-236  DE Uncharacterized protein
#=GS A0A1D6MAV8/166-236  DR GENE3D; a40628144459ba1643848a8b636c3df8/166-236; 
#=GS A0A1D6MAV8/166-236  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS O24569/195-265      AC O24569
#=GS O24569/195-265      OS Zea mays
#=GS O24569/195-265      DE HOX1B protein
#=GS O24569/195-265      DR GENE3D; b0d9698e7655a6cc2b7d158d941ab034/195-265; 
#=GS O24569/195-265      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAV4/166-236  AC A0A1D6MAV4
#=GS A0A1D6MAV4/166-236  OS Zea mays
#=GS A0A1D6MAV4/166-236  DE Uncharacterized protein
#=GS A0A1D6MAV4/166-236  DR GENE3D; f0817f3c08e25a2a88c3e691f0b47eb2/166-236; 
#=GS A0A1D6MAV4/166-236  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAV0/195-265  AC A0A1D6MAV0
#=GS A0A1D6MAV0/195-265  OS Zea mays
#=GS A0A1D6MAV0/195-265  DE Uncharacterized protein
#=GS A0A1D6MAV0/195-265  DR GENE3D; f641ae43cce3078787a888c9db0349d3/195-265; 
#=GS A0A1D6MAV0/195-265  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAU9/166-236  AC A0A1D6MAU9
#=GS A0A1D6MAU9/166-236  OS Zea mays
#=GS A0A1D6MAU9/166-236  DE Uncharacterized protein
#=GS A0A1D6MAU9/166-236  DR GENE3D; f893aaa14db1cceebac56799b82b000a/166-236; 
#=GS A0A1D6MAU9/166-236  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS P46605/196-265      AC P46605
#=GS P46605/196-265      OS Zea mays
#=GS P46605/196-265      DE Homeobox protein HOX1A
#=GS P46605/196-265      DR GENE3D; fd6c9615b367b10790d3bb7b78fc3d71/196-265; 
#=GS P46605/196-265      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6MAV2/195-265  AC A0A1D6MAV2
#=GS A0A1D6MAV2/195-265  OS Zea mays
#=GS A0A1D6MAV2/195-265  DE Uncharacterized protein
#=GS A0A1D6MAV2/195-265  DR GENE3D; fd7513547c309181036cd1448157b9d1/195-265; 
#=GS A0A1D6MAV2/195-265  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS P48786/568-634      AC P48786
#=GS P48786/568-634      OS Petroselinum crispum
#=GS P48786/568-634      DE Pathogenesis-related homeodomain protein
#=GS P48786/568-634      DR GENE3D; 4e7853a9baa4cafd681f3b2ead3a8dc0/568-634; 
#=GS P48786/568-634      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; asterids; Apiales; Apiineae; Apiaceae; Apioideae; Apieae; Petroselinum; Petroselinum crispum; 
#=GS R0HIK8/258-326      AC R0HIK8
#=GS R0HIK8/258-326      OS Capsella rubella
#=GS R0HIK8/258-326      DE Uncharacterized protein
#=GS R0HIK8/258-326      DR GENE3D; 9c6e3770b8dc7d488e21fc9f04e7e94f/258-326; 
#=GS R0HIK8/258-326      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS R0HZM0/205-273      AC R0HZM0
#=GS R0HZM0/205-273      OS Capsella rubella
#=GS R0HZM0/205-273      DE Uncharacterized protein
#=GS R0HZM0/205-273      DR GENE3D; 47a5c1c5555b19e19bfcbf621fc4016a/205-273; 
#=GS R0HZM0/205-273      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS M4FAU8/253-319      AC M4FAU8
#=GS M4FAU8/253-319      OS Brassica rapa subsp. pekinensis
#=GS M4FAU8/253-319      DE Uncharacterized protein
#=GS M4FAU8/253-319      DR GENE3D; 98b4f83dbf66cacbc6a11df0cbd9a196/253-319; 
#=GS M4FAU8/253-319      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS R0G287/258-326      AC R0G287
#=GS R0G287/258-326      OS Capsella rubella
#=GS R0G287/258-326      DE Uncharacterized protein
#=GS R0G287/258-326      DR GENE3D; 44ddd64612db8f9c695af1d80e15420f/258-326; 
#=GS R0G287/258-326      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A078ILC8/253-319  AC A0A078ILC8
#=GS A0A078ILC8/253-319  OS Brassica napus
#=GS A0A078ILC8/253-319  DE BnaA01g26090D protein
#=GS A0A078ILC8/253-319  DR GENE3D; fba469a0a2ae8877e7519b24dd594f1e/253-319; 
#=GS A0A078ILC8/253-319  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS D7L9Z9/248-316      AC D7L9Z9
#=GS D7L9Z9/248-316      OS Arabidopsis lyrata subsp. lyrata
#=GS D7L9Z9/248-316      DE Putative uncharacterized protein
#=GS D7L9Z9/248-316      DR GENE3D; 4a538f0f0eacf5c0fa4af44c24769c2b/248-316; 
#=GS D7L9Z9/248-316      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GF TC 145.8 1.9E-46
#=GF SQ 26
Q04996/253-321              --SLFDTDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGCDC
A0A1D6FTH1/167-236          -ETLFDSEGEISCEDIFCSTCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6FTG8/167-236          -ETLFDSEGEISCEDIFCSTCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
K3Z497/157-227              DESLFDSEGEISCEDIFCANCGSKDVTLGNDIILCDGACDRGFHQNCLNPPLRTEDIPEGDEGWLCPACDC
A0A1D6FTH2/118-187          -ETLFDSEGEISCEDIFCSTCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAV3/195-265          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1B6P9P1/217-287          DESLFDSEGEISCEDIFCATCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAV9/195-265          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAV7/195-265          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6FTG9/166-236          DETLFDSEGEISCEDIFCSTCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAU6/196-266          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAU7/167-237          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAV8/166-236          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
O24569/195-265              DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAV4/166-236          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAV0/195-265          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAU9/166-236          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
P46605/196-265              -ETLFDSEGEISCEDIFCSTCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
A0A1D6MAV2/195-265          DESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDC
P48786/568-634              ----FDSRGEIDSEDIFCAKCGSKDVTLSNDIILCDGACDRGFHQFCLDPPLLKEYIPPDDEGWLCPGCEC
R0HIK8/258-326              --SLFDSDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGCDC
R0HZM0/205-273              --SLFDSDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGCDC
M4FAU8/253-319              ----FDSGGEISSEDIFCAKCGSKDVHVDNDIILCDGFCDRGFHQYCVEPPLRKEDIPPDDESWLCPGCDC
R0G287/258-326              --SLFDSDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGCDC
A0A078ILC8/253-319          ----FDSGGEISSEDIFCAKCGSKDVHVDNDIILCDGFCDRGFHQYCVEPPLRKEDIPPDDESWLCPGCDC
D7L9Z9/248-316              --SLFDSDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDESWLCPGCDC
#=GC scorecons              12459985999869999975999765565999999995999999959769997597994699799996989
#=GC scorecons_70           ____***_****_******_*****__*_********_*******_**_****_****__*******_***
#=GC scorecons_80           ____***_****_******_****_____********_*******_**_****_****__*******_***
#=GC scorecons_90           ____***_****_*****__***______********_*******_*__***__*_**__**_****_***
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