# STOCKHOLM 1.0
#=GF ID 3.30.40.10/FF/59369
#=GF DE V(D)J recombination-activating protein 1
#=GF AC 3.30.40.10/FF/59369
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 41.704
#=GS P15918/161-261      AC P15918
#=GS P15918/161-261      OS Homo sapiens
#=GS P15918/161-261      DE V(D)J recombination-activating protein 1
#=GS P15918/161-261      DR GENE3D; 72039f38f256bd161386e032264d18de/161-261; 
#=GS P15918/161-261      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P15918/161-261      DR GO; GO:0002331; GO:0003677; GO:0004519; GO:0004842; GO:0005515; GO:0005634; GO:0005654; GO:0006310; GO:0006955; GO:0008270; GO:0010390; GO:0030183; GO:0033077; GO:0033151; GO:0042393; GO:0042803; GO:0043565; GO:0046872; GO:0051865; 
#=GS P15918/161-261      DR EC; 2.3.2.27; 
#=GS P34088/160-259      AC P34088
#=GS P34088/160-259      OS Oryctolagus cuniculus
#=GS P34088/160-259      DE V(D)J recombination-activating protein 1
#=GS P34088/160-259      DR GENE3D; 91b4852f7bc6ccf07850c71158dfbada/160-259; 
#=GS P34088/160-259      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Lagomorpha; Leporidae; Oryctolagus; Oryctolagus cuniculus; 
#=GS P34088/160-259      DR GO; GO:0002331; GO:0004519; GO:0004842; GO:0005634; GO:0008270; GO:0010390; GO:0030183; GO:0033077; GO:0033151; GO:0042393; GO:0042803; GO:0043565; GO:0046872; GO:0051865; 
#=GS P34088/160-259      DR EC; 2.3.2.27; 
#=GS Q867B5/161-261      AC Q867B5
#=GS Q867B5/161-261      OS Sus scrofa
#=GS Q867B5/161-261      DE V(D)J recombination-activating protein 1
#=GS Q867B5/161-261      DR GENE3D; 986ad7bca8a347f77b59f7223ffe2285/161-261; 
#=GS Q867B5/161-261      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS Q867B5/161-261      DR GO; GO:0002331; GO:0004519; GO:0004842; GO:0005634; GO:0008270; GO:0010390; GO:0030183; GO:0033077; GO:0033151; GO:0042393; GO:0042803; GO:0043565; GO:0046872; GO:0051865; 
#=GS Q867B5/161-261      DR EC; 2.3.2.27; 
#=GS G1S8G7/161-258      AC G1S8G7
#=GS G1S8G7/161-258      OS Nomascus leucogenys
#=GS G1S8G7/161-258      DE Uncharacterized protein
#=GS G1S8G7/161-258      DR GENE3D; 08b15c4e8e5a8ce1b7c59b70ae0c3544/161-258; 
#=GS G1S8G7/161-258      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS G1TU62/160-260      AC G1TU62
#=GS G1TU62/160-260      OS Oryctolagus cuniculus
#=GS G1TU62/160-260      DE V(D)J recombination-activating protein 1
#=GS G1TU62/160-260      DR GENE3D; 28dff2f11f8595c9b530cd14b64197e4/160-260; 
#=GS G1TU62/160-260      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Lagomorpha; Leporidae; Oryctolagus; Oryctolagus cuniculus; 
#=GS A0A0U2GTQ0/72-172   AC A0A0U2GTQ0
#=GS A0A0U2GTQ0/72-172   OS Exilisciurus exilis
#=GS A0A0U2GTQ0/72-172   DE RAG1
#=GS A0A0U2GTQ0/72-172   DR GENE3D; 46ea43020a8eb963e60577b318211267/72-172; 
#=GS A0A0U2GTQ0/72-172   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Sciuromorpha; Sciuridae; Callosciurinae; Callosciurini; Exilisciurus; Exilisciurus exilis; 
#=GS H2Q3F4/161-261      AC H2Q3F4
#=GS H2Q3F4/161-261      OS Pan troglodytes
#=GS H2Q3F4/161-261      DE Uncharacterized protein
#=GS H2Q3F4/161-261      DR GENE3D; 4f6b19368ab37777214aad934dba4919/161-261; 
#=GS H2Q3F4/161-261      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS F6WSB4/160-257      AC F6WSB4
#=GS F6WSB4/160-257      OS Equus caballus
#=GS F6WSB4/160-257      DE Uncharacterized protein
#=GS F6WSB4/160-257      DR GENE3D; 617a54439deb3a77ee2e31c2eacb1270/160-257; 
#=GS F6WSB4/160-257      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Perissodactyla; Equidae; Equus; Equus; Equus caballus; 
#=GS A0A096N450/161-261  AC A0A096N450
#=GS A0A096N450/161-261  OS Papio anubis
#=GS A0A096N450/161-261  DE Uncharacterized protein
#=GS A0A096N450/161-261  DR GENE3D; 6d52322f713b2a352adb6d3530cbefa0/161-261; 
#=GS A0A096N450/161-261  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS A0A0D9QZL1/161-261  AC A0A0D9QZL1
#=GS A0A0D9QZL1/161-261  OS Chlorocebus sabaeus
#=GS A0A0D9QZL1/161-261  DE Uncharacterized protein
#=GS A0A0D9QZL1/161-261  DR GENE3D; 6e6592997f67bffc976b40c2259cf6a4/161-261; 
#=GS A0A0D9QZL1/161-261  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS I3L7X1/161-261      AC I3L7X1
#=GS I3L7X1/161-261      OS Sus scrofa
#=GS I3L7X1/161-261      DE V(D)J recombination-activating protein 1
#=GS I3L7X1/161-261      DR GENE3D; 791fc840505f1c229a7136ed9efd3165/161-261; 
#=GS I3L7X1/161-261      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS Q6XC76/130-231      AC Q6XC76
#=GS Q6XC76/130-231      OS Sciurus carolinensis
#=GS Q6XC76/130-231      DE RAG1 protein
#=GS Q6XC76/130-231      DR GENE3D; 7be5a39a62c6dfa5671927bdd3e39ef5/130-231; 
#=GS Q6XC76/130-231      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus; Sciurus carolinensis; 
#=GS G3RBF2/161-260      AC G3RBF2
#=GS G3RBF2/161-260      OS Gorilla gorilla gorilla
#=GS G3RBF2/161-260      DE Uncharacterized protein
#=GS G3RBF2/161-260      DR GENE3D; a11cbd746c8cdf5fd6d25a36e95d00ac/161-260; 
#=GS G3RBF2/161-260      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS G7NDK1/161-261      AC G7NDK1
#=GS G7NDK1/161-261      OS Macaca mulatta
#=GS G7NDK1/161-261      DE V(D)J recombination-activating protein 1
#=GS G7NDK1/161-261      DR GENE3D; a7e3f8210fb921bfebd1a1c704788ade/161-261; 
#=GS G7NDK1/161-261      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS G7PQD9/161-261      AC G7PQD9
#=GS G7PQD9/161-261      OS Macaca fascicularis
#=GS G7PQD9/161-261      DE V(D)J recombination-activating protein 1
#=GS G7PQD9/161-261      DR GENE3D; f8280aea0e927f14612e3086d8276971/161-261; 
#=GS G7PQD9/161-261      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GF TC 217.9 1.1E-68
#=GF SQ 15
P15918/161-261              IDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVLDQARQARQHKRRAQARISSKD-
P34088/160-259              IDVKTDVDSIHPTEFCHNCWRIMHRKFSGAPCEVYFPRNATMEWHPHAPSCDICYTARRGLKRRNHQPNVQLSKKLKTVLDQARQARQRKRRVQARITSK--
Q867B5/161-261              IDVKADVDSIHPTEFCHNCWSFMHRKFSSTPCEVYSPRNAAMEWHPHTLNCDICHIARRGLKRKSQQPNMQLSKKLKTVIDRARQARQRKRRAQARISSKE-
G1S8G7/161-258              IDVKADVDSIHPTEFCHNCWSIMYRKFSSAPCEFYFPRNVTMEWHPHTPSCDICNTARRGLKRTSIQPNLQLSKKLKTVLDQARQARQCKRRAQAGIS----
G1TU62/160-260              IDVKTDVDSIHPTEFCHNCWRIMHRKFSGAPCEVYFPRNATMEWHPHAPSCDICYTARRGLKRRNHQPNVQLSKKLKTVLDQARQARQRKRRVQARITSKE-
A0A0U2GTQ0/72-172           IDVKADVDAIHPTEFCHNCWNIMHRKFSSAPCEVYFPRNATMEWHPHTPSCDICHTARRGLKRKRHQPNVQLSKKLKTVLDQARQARQRKRRAQARISSKE-
H2Q3F4/161-261              IDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVLDQARQARQRKRRAQARISSKD-
F6WSB4/160-257              IDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPKNATMEWHPHTPSCDICHTARQGLKRKSHQPNVQLSKKLKTAVDRARQARQHKRRAQARIS----
A0A096N450/161-261          IDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVNVEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVLDQARQARQRKRRAQARTSSKD-
A0A0D9QZL1/161-261          IDVKADVDSIHPTEFCHNCWSIMHRKFSSVPCEVYFPRNVTVEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVLDQARQARQRKRRAQARTSSKD-
I3L7X1/161-261              IDVKADVDSIHPTEFCHNCWSFMHRKFSSTPCEVYSPRNATMEWHPHTLNCDICHIARRGLKRKSQQPNMQLSKKLKTVIDRARQARQRKRRAQARISSKE-
Q6XC76/130-231              IDVKADVDTIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNATMEWHPHAPSCDICHTARRGLKRKRPQPNVQLSKKLKTVLDRARQARRHKRRAQARISSKEV
G3RBF2/161-260              IDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTACRGLKRKSLQPNLQLSKKLKTVLDQARRARQRKRRAQARISSK--
G7NDK1/161-261              IDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTVEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVLDQARQARQRKRRAQARTSSKD-
G7PQD9/161-261              IDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTVEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVLDQARQARQRKRRAQARTSSKD-
#=GC scorecons              999979997999999999996798999977999796989677999997779999579889999663999599999999869699899869997997776630
#=GC scorecons_70           ***************************************_**************_*********__***_****************************____
#=GC scorecons_80           ********************__*******_*****_***_*******__*****_********___***_*********_*_******_*******_*____
#=GC scorecons_90           ****_***_***********__******__***_*_***___*****___****__*******___***_********__*_******_***_**_______
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