# STOCKHOLM 1.0
#=GF ID 3.30.160.100/FF/147
#=GF DE Ribosome hibernation promoting factor
#=GF AC 3.30.160.100/FF/147
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 16.285
#=GS Q8Y2C9/1-101      AC Q8Y2C9
#=GS Q8Y2C9/1-101      OS Ralstonia solanacearum GMI1000
#=GS Q8Y2C9/1-101      DE Putative sigma-54 modulation protein
#=GS Q8Y2C9/1-101      DR GENE3D; 2aac274101ce26ad128ed12742aba471/1-101; 
#=GS Q8Y2C9/1-101      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia solanacearum; 
#=GS A0A1L3DHH6/1-101  AC A0A1L3DHH6
#=GS A0A1L3DHH6/1-101  OS Ralstonia solanacearum FJAT-1458
#=GS A0A1L3DHH6/1-101  DE Ribosomal subunit interface protein
#=GS A0A1L3DHH6/1-101  DR GENE3D; 2aac274101ce26ad128ed12742aba471/1-101; 
#=GS A0A1L3DHH6/1-101  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia solanacearum; 
#=GS M4UBD8/1-101      AC M4UBD8
#=GS M4UBD8/1-101      OS Ralstonia solanacearum FQY_4
#=GS M4UBD8/1-101      DE Ribosome hibernation protein YhbH
#=GS M4UBD8/1-101      DR GENE3D; 2aac274101ce26ad128ed12742aba471/1-101; 
#=GS M4UBD8/1-101      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia solanacearum; 
#=GS A0A0K1ZP76/1-101  AC A0A0K1ZP76
#=GS A0A0K1ZP76/1-101  OS Ralstonia solanacearum
#=GS A0A0K1ZP76/1-101  DE Ribosome hibernation promoting factor
#=GS A0A0K1ZP76/1-101  DR GENE3D; 2aac274101ce26ad128ed12742aba471/1-101; 
#=GS A0A0K1ZP76/1-101  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia solanacearum; 
#=GS A0A1J0IEX2/1-101  AC A0A1J0IEX2
#=GS A0A1J0IEX2/1-101  OS Ralstonia solanacearum OE1-1
#=GS A0A1J0IEX2/1-101  DE Uncharacterized protein
#=GS A0A1J0IEX2/1-101  DR GENE3D; 2aac274101ce26ad128ed12742aba471/1-101; 
#=GS A0A1J0IEX2/1-101  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia solanacearum; 
#=GS R0CHK2/1-112      AC R0CHK2
#=GS R0CHK2/1-112      OS Ralstonia pickettii OR214
#=GS R0CHK2/1-112      DE SSU ribosomal protein S30P,sigma 54 modulation protein
#=GS R0CHK2/1-112      DR GENE3D; 456461651b5d0f12efdaf1530d452de6/1-112; 
#=GS R0CHK2/1-112      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii; 
#=GS A0A0B2AMD0/1-112  AC A0A0B2AMD0
#=GS A0A0B2AMD0/1-112  OS Mumia flava
#=GS A0A0B2AMD0/1-112  DE Ribosome hibernation promoting factor
#=GS A0A0B2AMD0/1-112  DR GENE3D; 456461651b5d0f12efdaf1530d452de6/1-112; 
#=GS A0A0B2AMD0/1-112  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia; Mumia flava; 
#=GS C6BBW2/1-112      AC C6BBW2
#=GS C6BBW2/1-112      OS Ralstonia pickettii 12D
#=GS C6BBW2/1-112      DE Sigma 54 modulation protein/ribosomal protein S30EA
#=GS C6BBW2/1-112      DR GENE3D; 456461651b5d0f12efdaf1530d452de6/1-112; 
#=GS C6BBW2/1-112      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii; 
#=GS B2UES8/1-112      AC B2UES8
#=GS B2UES8/1-112      OS Ralstonia pickettii 12J
#=GS B2UES8/1-112      DE Sigma 54 modulation protein/ribosomal protein S30EA
#=GS B2UES8/1-112      DR GENE3D; 456461651b5d0f12efdaf1530d452de6/1-112; 
#=GS B2UES8/1-112      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii; 
#=GS U3GHS1/1-112      AC U3GHS1
#=GS U3GHS1/1-112      OS Ralstonia sp. 5_2_56FAA
#=GS U3GHS1/1-112      DE Ribosomal subunit interface protein
#=GS U3GHS1/1-112      DR GENE3D; 456461651b5d0f12efdaf1530d452de6/1-112; 
#=GS U3GHS1/1-112      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia sp. 5_2_56FAA; 
#=GS A0A1K0IIF5/1-101  AC A0A1K0IIF5
#=GS A0A1K0IIF5/1-101  OS Cupriavidus necator
#=GS A0A1K0IIF5/1-101  DE Ribosome hibernation promoting factor
#=GS A0A1K0IIF5/1-101  DR GENE3D; 3bd5520e139c9ffe919864df9ee9a386/1-101; 
#=GS A0A1K0IIF5/1-101  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus necator; 
#=GS A0A1C3U845/1-101  AC A0A1C3U845
#=GS A0A1C3U845/1-101  OS Cupriavidus alkaliphilus
#=GS A0A1C3U845/1-101  DE Sigma 54 modulation protein /SSU ribosomal protein S30P
#=GS A0A1C3U845/1-101  DR GENE3D; 3bd5520e139c9ffe919864df9ee9a386/1-101; 
#=GS A0A1C3U845/1-101  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus alkaliphilus; 
#=GS A0A022FZN5/1-101  AC A0A022FZN5
#=GS A0A022FZN5/1-101  OS Cupriavidus sp. SK-4
#=GS A0A022FZN5/1-101  DE Ribosome hibernation promoting factor
#=GS A0A022FZN5/1-101  DR GENE3D; 3bd5520e139c9ffe919864df9ee9a386/1-101; 
#=GS A0A022FZN5/1-101  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus sp. SK-4; 
#=GS B2AGV0/1-101      AC B2AGV0
#=GS B2AGV0/1-101      OS Cupriavidus taiwanensis LMG 19424
#=GS B2AGV0/1-101      DE Sigma(54) modulation protein
#=GS B2AGV0/1-101      DR GENE3D; 3bd5520e139c9ffe919864df9ee9a386/1-101; 
#=GS B2AGV0/1-101      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus taiwanensis; 
#=GS R7XBY2/1-101      AC R7XBY2
#=GS R7XBY2/1-101      OS Ralstonia sp. GA3-3
#=GS R7XBY2/1-101      DE Sigma(54) modulation protein
#=GS R7XBY2/1-101      DR GENE3D; 3bd5520e139c9ffe919864df9ee9a386/1-101; 
#=GS R7XBY2/1-101      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia sp. GA3-3; 
#=GS A0A142JFE0/1-101  AC A0A142JFE0
#=GS A0A142JFE0/1-101  OS Cupriavidus nantongensis
#=GS A0A142JFE0/1-101  DE Ribosome hibernation promoting factor
#=GS A0A142JFE0/1-101  DR GENE3D; 3bd5520e139c9ffe919864df9ee9a386/1-101; 
#=GS A0A142JFE0/1-101  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus nantongensis; 
#=GS P28613/1-101      AC P28613
#=GS P28613/1-101      OS Ralstonia eutropha H16
#=GS P28613/1-101      DE Ribosome hibernation promoting factor
#=GS P28613/1-101      DR GENE3D; 3bd5520e139c9ffe919864df9ee9a386/1-101; 
#=GS P28613/1-101      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus necator; 
#=GS G0EUQ6/1-101      AC G0EUQ6
#=GS G0EUQ6/1-101      OS Cupriavidus necator N-1
#=GS G0EUQ6/1-101      DE Sigma(54) modulation protein
#=GS G0EUQ6/1-101      DR GENE3D; 3bd5520e139c9ffe919864df9ee9a386/1-101; 
#=GS G0EUQ6/1-101      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus necator; 
#=GF TC 222.0 1.3E-70
#=GF SQ 18
Q8Y2C9/1-101              MNFKLSGHHLDITPPLREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKSRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVLKYKDRVQGHD-----------
A0A1L3DHH6/1-101          MNFKLSGHHLDITPPLREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKSRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVLKYKDRVQGHD-----------
M4UBD8/1-101              MNFKLSGHHLDITPPLREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKSRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVLKYKDRVQGHD-----------
A0A0K1ZP76/1-101          MNFKLSGHHLDITPPLREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKSRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVLKYKDRVQGHD-----------
A0A1J0IEX2/1-101          MNFKLSGHHLDITPPLREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKSRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVLKYKDRVQGHD-----------
R0CHK2/1-112              MNFKLSGHHLDITPALREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVIKYKDRVQGHDRDSMKHQAFQA
A0A0B2AMD0/1-112          MNFKLSGHHLDITPALREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVIKYKDRVQGHDRDSMKHQAFQA
C6BBW2/1-112              MNFKLSGHHLDITPALREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVIKYKDRVQGHDRDSMKHQAFQA
B2UES8/1-112              MNFKLSGHHLDITPALREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVIKYKDRVQGHDRDSMKHQAFQA
U3GHS1/1-112              MNFKLSGHHLDITPALREYVETKLERVIRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVIKYKDRVQGHDRDSMKHQAFQA
A0A1K0IIF5/1-101          MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHD-----------
A0A1C3U845/1-101          MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHD-----------
A0A022FZN5/1-101          MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHD-----------
B2AGV0/1-101              MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHD-----------
R7XBY2/1-101              MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHD-----------
A0A142JFE0/1-101          MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHD-----------
P28613/1-101              MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHD-----------
G0EUQ6/1-101              MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHD-----------
#=GC scorecons            9999699999999969999999999977999999999999999999999699999999999999979996999999999959999999997799999999911111111111
#=GC scorecons_70         **************_*****************************************************************_********************___________
#=GC scorecons_80         ****_*********_**********************************_*******************_**********_*********_**********___________
#=GC scorecons_90         ****_*********_***********__*********************_***************_***_**********_*********__*********___________
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