# STOCKHOLM 1.0 #=GF ID 3.30.1490.70/FF/7205 #=GF DE Putative ATP-dependent DNA ligase #=GF AC 3.30.1490.70/FF/7205 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 80.558 #=GS Q1ML27/94-147 AC Q1ML27 #=GS Q1ML27/94-147 OS Rhizobium leguminosarum bv. viciae 3841 #=GS Q1ML27/94-147 DE Putative DNA ligase #=GS Q1ML27/94-147 DR GENE3D; 7b39c9be740359443570eb3bd3c7c20f/94-147; #=GS Q1ML27/94-147 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium leguminosarum; #=GS Q89FC8/275-286_403-443 AC Q89FC8 #=GS Q89FC8/275-286_403-443 OS Bradyrhizobium diazoefficiens USDA 110 #=GS Q89FC8/275-286_403-443 DE Bll6773 protein #=GS Q89FC8/275-286_403-443 DR GENE3D; 7d7cbc7cf7e1c6be9ee9b8110bd72fa9/275-286_403-443; #=GS Q89FC8/275-286_403-443 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; #=GS A0A0R3E2Z2/268-279_396-436 AC A0A0R3E2Z2 #=GS A0A0R3E2Z2/268-279_396-436 OS Bradyrhizobium manausense #=GS A0A0R3E2Z2/268-279_396-436 DE ATP-dependent DNA ligase #=GS A0A0R3E2Z2/268-279_396-436 DR GENE3D; 070bf4d5bc62ca827715b694e6541fda/268-279_396-436; #=GS A0A0R3E2Z2/268-279_396-436 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium manausense; #=GS Q210G6/291-301_420-460 AC Q210G6 #=GS Q210G6/291-301_420-460 OS Rhodopseudomonas palustris BisB18 #=GS Q210G6/291-301_420-460 DE ATP dependent DNA ligase #=GS Q210G6/291-301_420-460 DR GENE3D; 0759874fc435b5ef134b3ad7963a5e12/291-301_420-460; #=GS Q210G6/291-301_420-460 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; #=GS A0A1G0BEG2/226-239_359-399 AC A0A1G0BEG2 #=GS A0A1G0BEG2/226-239_359-399 OS Gallionellales bacterium GWA2_60_142 #=GS A0A1G0BEG2/226-239_359-399 DE DNA ligase D #=GS A0A1G0BEG2/226-239_359-399 DR GENE3D; 0e02b6e9935854ff486a6ad854f809d5/226-239_359-399; #=GS A0A1G0BEG2/226-239_359-399 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellales bacterium GWA2_60_142; #=GS A0A1H2AML6/269-279_397-437 AC A0A1H2AML6 #=GS A0A1H2AML6/269-279_397-437 OS Bradyrhizobium canariense #=GS A0A1H2AML6/269-279_397-437 DE ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module #=GS A0A1H2AML6/269-279_397-437 DR GENE3D; 205d1432d0757188ff74285d9d6d4d6e/269-279_397-437; #=GS A0A1H2AML6/269-279_397-437 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium canariense; #=GS A0A176YVW5/272-283_400-440 AC A0A176YVW5 #=GS A0A176YVW5/272-283_400-440 OS Bradyrhizobium neotropicale #=GS A0A176YVW5/272-283_400-440 DE ATP-dependent DNA ligase #=GS A0A176YVW5/272-283_400-440 DR GENE3D; 266b4cd77735ce22b13af4e42fefb6ee/272-283_400-440; #=GS A0A176YVW5/272-283_400-440 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium neotropicale; #=GS Q133M6/296-306_425-465 AC Q133M6 #=GS Q133M6/296-306_425-465 OS Rhodopseudomonas palustris BisB5 #=GS Q133M6/296-306_425-465 DE ATP dependent DNA ligase #=GS Q133M6/296-306_425-465 DR GENE3D; 306f32e5d3096063f186a02e4c767ab5/296-306_425-465; #=GS Q133M6/296-306_425-465 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; #=GS A0A109K209/263-276_393-433 AC A0A109K209 #=GS A0A109K209/263-276_393-433 OS Bradyrhizobium sp. BR 10303 #=GS A0A109K209/263-276_393-433 DE ATP-dependent DNA ligase #=GS A0A109K209/263-276_393-433 DR GENE3D; 3d91ec6d6d4a0401fbb0bee55669f801/263-276_393-433; #=GS A0A109K209/263-276_393-433 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp. BR 10303; #=GS I0G1W9/270-282_399-439 AC I0G1W9 #=GS I0G1W9/270-282_399-439 OS Bradyrhizobium sp. S23321 #=GS I0G1W9/270-282_399-439 DE ATP-dependent DNA ligase #=GS I0G1W9/270-282_399-439 DR GENE3D; 3e8455efc00a1046d06ba9fe5a67791f/270-282_399-439; #=GS I0G1W9/270-282_399-439 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp. S23321; #=GS A0A160UCT5/282-292_409-449 AC A0A160UCT5 #=GS A0A160UCT5/282-292_409-449 OS Bradyrhizobium sp. #=GS A0A160UCT5/282-292_409-449 DE ATPdependent DNA ligase EC 6511 clustered with Ku protein LigD #=GS A0A160UCT5/282-292_409-449 DR GENE3D; 94bf6fd73d971eba6f079fc10f2a6117/282-292_409-449; #=GS A0A160UCT5/282-292_409-449 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp.; #=GS A0A151FY66/270-283_400-440 AC A0A151FY66 #=GS A0A151FY66/270-283_400-440 OS Bradyrhizobium liaoningense #=GS A0A151FY66/270-283_400-440 DE ATP-dependent DNA ligase #=GS A0A151FY66/270-283_400-440 DR GENE3D; af01e5924e3f2a5a41a31a28169c4217/270-283_400-440; #=GS A0A151FY66/270-283_400-440 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium liaoningense; #=GS A0A0N0KHZ3/277-287_406-446 AC A0A0N0KHZ3 #=GS A0A0N0KHZ3/277-287_406-446 OS Rhodopseudomonas sp. AAP120 #=GS A0A0N0KHZ3/277-287_406-446 DE ATP-dependent DNA ligase #=GS A0A0N0KHZ3/277-287_406-446 DR GENE3D; be3147cb0870e16cf76604b44d0daa4d/277-287_406-446; #=GS A0A0N0KHZ3/277-287_406-446 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas sp. AAP120; #=GS A0A0Q6A459/272-283_400-440 AC A0A0Q6A459 #=GS A0A0Q6A459/272-283_400-440 OS Bradyrhizobium sp. Leaf396 #=GS A0A0Q6A459/272-283_400-440 DE ATP-dependent DNA ligase #=GS A0A0Q6A459/272-283_400-440 DR GENE3D; c36d014293164bee4f48bd65efed2f6a/272-283_400-440; #=GS A0A0Q6A459/272-283_400-440 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sp. Leaf396; #=GS G7DBZ5/271-282_399-439 AC G7DBZ5 #=GS G7DBZ5/271-282_399-439 OS Bradyrhizobium japonicum USDA 6 #=GS G7DBZ5/271-282_399-439 DE Uncharacterized protein #=GS G7DBZ5/271-282_399-439 DR GENE3D; c95981a50eb8eaf0653fbdcc9483c511/271-282_399-439; #=GS G7DBZ5/271-282_399-439 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium japonicum; #=GS E6VKS9/285-297_416-456 AC E6VKS9 #=GS E6VKS9/285-297_416-456 OS Rhodopseudomonas palustris DX-1 #=GS E6VKS9/285-297_416-456 DE DNA ligase D #=GS E6VKS9/285-297_416-456 DR GENE3D; d2921f8ca0144d9182ec4e1dde41ced8/285-297_416-456; #=GS E6VKS9/285-297_416-456 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; #=GS A0A0D7F5I2/292-302_421-461 AC A0A0D7F5I2 #=GS A0A0D7F5I2/292-302_421-461 OS Rhodopseudomonas palustris #=GS A0A0D7F5I2/292-302_421-461 DE ATP-dependent DNA ligase #=GS A0A0D7F5I2/292-302_421-461 DR GENE3D; f4297b70e4a21ca18f2320bbaaaa22bc/292-302_421-461; #=GS A0A0D7F5I2/292-302_421-461 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; #=GS Q2IYX6/290-300_419-459 AC Q2IYX6 #=GS Q2IYX6/290-300_419-459 OS Rhodopseudomonas palustris HaA2 #=GS Q2IYX6/290-300_419-459 DE ATP dependent DNA ligase, central #=GS Q2IYX6/290-300_419-459 DR GENE3D; fac59153f74c9c52e71308fe410c56bb/290-300_419-459; #=GS Q2IYX6/290-300_419-459 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; #=GF TC 142.1 1.8E-46 #=GF SQ 18 Q1ML27/94-147 ----AGGQRDIRLSEEIETDGDQLLASACEHGLEGIIAKRRDSPYRSGRLGDWVKIKR Q89FC8/275-286_403-443 --AGDGWCHEIKFDEHFESGGDAVLQSACKLELEGVVSKKLDAPYRSGRTESWTK--- A0A0R3E2Z2/268-279_396-436 --ASDGWCHEIKFDEHFESGGDAVLQSACKLELEGVVSKKLDAPYRSGRTESWTK--- Q210G6/291-301_420-460 ---GAGWGHEIKFDEHFESGGDAILQSACKMSLEGIVSKKLDAPYRSGRSESWTK--- A0A1G0BEG2/226-239_359-399 APKGSAWLHEIKFDDHMQGQGPDFFEQACTLGLEGIISKRADAPYRSGRSTLWQK--- A0A1H2AML6/269-279_397-437 ---ADGWGHEIKFDEHFESGGDAILQSACKLSLEGIVSKKLDAPYRSGRSENWTK--- A0A176YVW5/272-283_400-440 --AGDGWCHEIKFDEHFESGGDAVLQSACKLELEGVVSKKLDAAYRSGRTESWTK--- Q133M6/296-306_425-465 ---GDGWGHEIKFDEHFDTGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTK--- A0A109K209/263-276_393-433 PPSGSGWGHEIKFDEHFEEDGETVLESARKLGLEGIVSKRLDAPYRSGRSDHWTK--- I0G1W9/270-282_399-439 -PSGDGWCHEIKFDEHFESGGDAVLQSACKLELEGIVSKKLDAPYRSGRTESWTK--- A0A160UCT5/282-292_409-449 ---GDGWCHEIKFDEHFESGGDAVLQSACKLELEGVVSKKLDAPYRSGRTESWTK--- A0A151FY66/270-283_400-440 PASGAGWCHEIKFDEHFESGGDAVLQSACKLELEGVVSKKLDAPYRSGRTESWTK--- A0A0N0KHZ3/277-287_406-446 ---GEGWGHEIKFDDHFETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSESWTK--- A0A0Q6A459/272-283_400-440 --ADEGWCHEIKFDEHFESGGDAVLRSACKLELEGVVSKKLNAPYRSGRTESWVK--- G7DBZ5/271-282_399-439 --AADGWCHEIKFDEHFESSGDAVLQSACKLELEGVVSKKLDAPYRSGRTESWTK--- E6VKS9/285-297_416-456 -PSGDGWGHEIKFDEHFETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSGAWTK--- A0A0D7F5I2/292-302_421-461 ---ADGWGHEIKFDDHFESGGDAILQSACKLSLEGIVSKRLDAPYRSGRSDSWTK--- Q2IYX6/290-300_419-459 ---SDGWRHEIKFDEHFETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTK--- #=GC scorecons 0014477378987777675596557579866499977797587899999554959000 #=GC scorecons_70 _____**_**********__**__*_*****_********_********___*_*___ #=GC scorecons_80 _____*__********_*__*___*_***___*******__********___*_*___ #=GC scorecons_90 __________*_________*______*____***___*__*_******___*_*___ //