# STOCKHOLM 1.0 #=GF ID 3.30.1490.20/FF/23106 #=GF DE D-alanine--D-alanine ligase #=GF AC 3.30.1490.20/FF/23106 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 90.254 #=GS Q8RDQ4/110-163 AC Q8RDQ4 #=GS Q8RDQ4/110-163 OS Fusobacterium nucleatum subsp. nucleatum ATCC 25586 #=GS Q8RDQ4/110-163 DE D-alanine--D-alanine ligase #=GS Q8RDQ4/110-163 DR GENE3D; 350a8d38bd7b90961e5897f6bb6c2656/110-163; #=GS Q8RDQ4/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. nucleatum; #=GS Q8RDQ4/110-163 DR EC; 6.3.2.4; #=GS A0A0F7WS55/583-654 AC A0A0F7WS55 #=GS A0A0F7WS55/583-654 OS Chlamydia pneumoniae #=GS A0A0F7WS55/583-654 DE D-alanine--D-alanine ligase #=GS A0A0F7WS55/583-654 DR GENE3D; 54fbde7302aadf6de8f1bca1d23d0389/583-654; #=GS A0A0F7WS55/583-654 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pneumoniae; #=GS A0A0F7WS55/583-654 DR EC; 6.3.2.4; 6.3.2.8; #=GS Q821S4/584-656 AC Q821S4 #=GS Q821S4/584-656 OS Chlamydophila caviae GPIC #=GS Q821S4/584-656 DE Bifunctional enzyme MurC/Ddl #=GS Q821S4/584-656 DR GENE3D; 9e6c532feb1f3481146c28f91fde33b2/584-656; #=GS Q821S4/584-656 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia caviae; #=GS Q821S4/584-656 DR EC; 6.3.2.4; 6.3.2.8; #=GS A0A0F7XRM6/583-654 AC A0A0F7XRM6 #=GS A0A0F7XRM6/583-654 OS Chlamydia pneumoniae #=GS A0A0F7XRM6/583-654 DE D-alanine--D-alanine ligase #=GS A0A0F7XRM6/583-654 DR GENE3D; c488fd9031d639fd422b3376a79f1cb1/583-654; #=GS A0A0F7XRM6/583-654 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pneumoniae; #=GS A0A0F7XRM6/583-654 DR EC; 6.3.2.4; 6.3.2.8; #=GS A0A0F7XK32/583-654 AC A0A0F7XK32 #=GS A0A0F7XK32/583-654 OS Chlamydia pneumoniae #=GS A0A0F7XK32/583-654 DE D-alanine--D-alanine ligase #=GS A0A0F7XK32/583-654 DR GENE3D; c4b77b5043aa1164ad23144d887f06cc/583-654; #=GS A0A0F7XK32/583-654 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pneumoniae; #=GS A0A0F7XK32/583-654 DR EC; 6.3.2.4; 6.3.2.8; #=GS Q9Z701/583-654 AC Q9Z701 #=GS Q9Z701/583-654 OS Chlamydia pneumoniae #=GS Q9Z701/583-654 DE Bifunctional enzyme MurC/Ddl #=GS Q9Z701/583-654 DR GENE3D; c4b77b5043aa1164ad23144d887f06cc/583-654; #=GS Q9Z701/583-654 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pneumoniae; #=GS Q9Z701/583-654 DR EC; 6.3.2.4; 6.3.2.8; #=GS Q5L525/583-655 AC Q5L525 #=GS Q5L525/583-655 OS Chlamydia abortus S26/3 #=GS Q5L525/583-655 DE D-alanine--D-alanine ligase #=GS Q5L525/583-655 DR GENE3D; c60fc5b7f513a25ba443c70439f38ed9/583-655; #=GS Q5L525/583-655 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia abortus; #=GS Q5L525/583-655 DR EC; 6.3.2.4; 6.3.2.8; #=GS W8JRL7/585-656 AC W8JRL7 #=GS W8JRL7/585-656 OS Chlamydia avium 10DC88 #=GS W8JRL7/585-656 DE D-alanine--D-alanine ligase #=GS W8JRL7/585-656 DR GENE3D; 6f4d970e532ff8c1599c902cd3174f18/585-656; #=GS W8JRL7/585-656 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia avium; #=GS W8JRL7/585-656 DR EC; 6.3.2.4; 6.3.2.8; #=GS S7KRM6/585-656 AC S7KRM6 #=GS S7KRM6/585-656 OS Chlamydia psittaci 10_743_SC13 #=GS S7KRM6/585-656 DE D-alanine--D-alanine ligase #=GS S7KRM6/585-656 DR GENE3D; 6f4d970e532ff8c1599c902cd3174f18/585-656; #=GS S7KRM6/585-656 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; #=GS S7KRM6/585-656 DR EC; 6.3.2.4; 6.3.2.8; #=GS S7ISU7/583-654 AC S7ISU7 #=GS S7ISU7/583-654 OS Chlamydia psittaci C1/97 #=GS S7ISU7/583-654 DE D-alanine--D-alanine ligase #=GS S7ISU7/583-654 DR GENE3D; 2b12c78e6e69c9c067534b9e435321ad/583-654; #=GS S7ISU7/583-654 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; #=GS S7ISU7/583-654 DR EC; 6.3.2.4; 6.3.2.8; #=GS Q255W3/584-656 AC Q255W3 #=GS Q255W3/584-656 OS Chlamydia felis Fe/C-56 #=GS Q255W3/584-656 DE D-alanine--D-alanine ligase #=GS Q255W3/584-656 DR GENE3D; 60c9e8dc139e0c3a24ae9deed8f51321/584-656; #=GS Q255W3/584-656 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia felis; #=GS Q255W3/584-656 DR EC; 6.3.2.4; 6.3.2.8; #=GS V8TSS4/582-653 AC V8TSS4 #=GS V8TSS4/582-653 OS Chlamydia pecorum DBDeUG #=GS V8TSS4/582-653 DE D-alanine--D-alanine ligase #=GS V8TSS4/582-653 DR GENE3D; 87d7645f319dd398d39bf91471171c0f/582-653; #=GS V8TSS4/582-653 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pecorum; #=GS V8TSS4/582-653 DR EC; 6.3.2.4; 6.3.2.8; #=GS A0A1D3CPI9/583-654 AC A0A1D3CPI9 #=GS A0A1D3CPI9/583-654 OS Chlamydia psittaci #=GS A0A1D3CPI9/583-654 DE D-alanine--D-alanine ligase #=GS A0A1D3CPI9/583-654 DR GENE3D; 205d6ddf294b427cdaf188182f28f20c/583-654; #=GS A0A1D3CPI9/583-654 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; #=GS A0A1D3CPI9/583-654 DR EC; 6.3.2.4; 6.3.2.8; #=GS A0A0E2JBM0/583-654 AC A0A0E2JBM0 #=GS A0A0E2JBM0/583-654 OS Chlamydia psittaci 01DC11 #=GS A0A0E2JBM0/583-654 DE D-alanine--D-alanine ligase #=GS A0A0E2JBM0/583-654 DR GENE3D; 205d6ddf294b427cdaf188182f28f20c/583-654; #=GS A0A0E2JBM0/583-654 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; #=GS A0A0E2JBM0/583-654 DR EC; 6.3.2.4; 6.3.2.8; #=GS S7K4D7/583-654 AC S7K4D7 #=GS S7K4D7/583-654 OS Chlamydia psittaci 08-2626_L3 #=GS S7K4D7/583-654 DE D-alanine--D-alanine ligase #=GS S7K4D7/583-654 DR GENE3D; 205d6ddf294b427cdaf188182f28f20c/583-654; #=GS S7K4D7/583-654 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; #=GS S7K4D7/583-654 DR EC; 6.3.2.4; 6.3.2.8; #=GS Q8D2Y5/153-221 AC Q8D2Y5 #=GS Q8D2Y5/153-221 OS Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis #=GS Q8D2Y5/153-221 DE D-alanine--D-alanine ligase #=GS Q8D2Y5/153-221 DR GENE3D; 7d468d066773779e0621576e507fb697/153-221; #=GS Q8D2Y5/153-221 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Wigglesworthia; Wigglesworthia glossinidia; #=GS Q8D2Y5/153-221 DR EC; 6.3.2.4; #=GS A0A0E2J1W7/439-510 AC A0A0E2J1W7 #=GS A0A0E2J1W7/439-510 OS Chlamydia psittaci 02DC14 #=GS A0A0E2J1W7/439-510 DE D-alanine--D-alanine ligase #=GS A0A0E2J1W7/439-510 DR GENE3D; 9332a33cd62851375bbbbc2ab87d13d4/439-510; #=GS A0A0E2J1W7/439-510 DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; #=GS A0A0E2J1W7/439-510 DR EC; 6.3.2.4; #=GS X8HHW3/110-163 AC X8HHW3 #=GS X8HHW3/110-163 OS Fusobacterium sp. CM22 #=GS X8HHW3/110-163 DE D-alanine--D-alanine ligase #=GS X8HHW3/110-163 DR GENE3D; 9e120da263bab809b48376ff81e83fec/110-163; #=GS X8HHW3/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium sp. CM22; #=GS X8HHW3/110-163 DR EC; 6.3.2.4; #=GS A0A0S2ZVD4/110-163 AC A0A0S2ZVD4 #=GS A0A0S2ZVD4/110-163 OS Fusobacterium nucleatum subsp. polymorphum #=GS A0A0S2ZVD4/110-163 DE D-alanine--D-alanine ligase #=GS A0A0S2ZVD4/110-163 DR GENE3D; aa4a849d59ccb8a69a05187668ab69c1/110-163; #=GS A0A0S2ZVD4/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. polymorphum; #=GS A0A0S2ZVD4/110-163 DR EC; 6.3.2.4; #=GS X7SDF0/110-163 AC X7SDF0 #=GS X7SDF0/110-163 OS Fusobacterium nucleatum 13_3C #=GS X7SDF0/110-163 DE D-alanine--D-alanine ligase #=GS X7SDF0/110-163 DR GENE3D; aa4a849d59ccb8a69a05187668ab69c1/110-163; #=GS X7SDF0/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; #=GS X7SDF0/110-163 DR EC; 6.3.2.4; #=GS A0A1F0DYR5/110-163 AC A0A1F0DYR5 #=GS A0A1F0DYR5/110-163 OS Fusobacterium sp. HMSC064B11 #=GS A0A1F0DYR5/110-163 DE D-alanine--D-alanine ligase #=GS A0A1F0DYR5/110-163 DR GENE3D; aa4a849d59ccb8a69a05187668ab69c1/110-163; #=GS A0A1F0DYR5/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium sp. HMSC064B11; #=GS A0A1F0DYR5/110-163 DR EC; 6.3.2.4; #=GS A0A0X3Y340/110-163 AC A0A0X3Y340 #=GS A0A0X3Y340/110-163 OS Fusobacterium nucleatum subsp. nucleatum #=GS A0A0X3Y340/110-163 DE D-alanine--D-alanine ligase #=GS A0A0X3Y340/110-163 DR GENE3D; 5eee55748fc852fa6349963ccc7ab4ba/110-163; #=GS A0A0X3Y340/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. nucleatum; #=GS A0A0X3Y340/110-163 DR EC; 6.3.2.4; #=GS D5RBA9/110-163 AC D5RBA9 #=GS D5RBA9/110-163 OS Fusobacterium nucleatum subsp. nucleatum ATCC 23726 #=GS D5RBA9/110-163 DE D-alanine--D-alanine ligase #=GS D5RBA9/110-163 DR GENE3D; 68ee1b95f8714fa3988c50caf75ddfdf/110-163; #=GS D5RBA9/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. nucleatum; #=GS D5RBA9/110-163 DR EC; 6.3.2.4; #=GS A5TWY3/110-163 AC A5TWY3 #=GS A5TWY3/110-163 OS Fusobacterium nucleatum subsp. polymorphum ATCC 10953 #=GS A5TWY3/110-163 DE D-alanine--D-alanine ligase #=GS A5TWY3/110-163 DR GENE3D; b130298d83f26c3553f69387b2afa5d4/110-163; #=GS A5TWY3/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. polymorphum; #=GS A5TWY3/110-163 DR EC; 6.3.2.4; #=GS U7TS51/110-163 AC U7TS51 #=GS U7TS51/110-163 OS Fusobacterium nucleatum CTI-6 #=GS U7TS51/110-163 DE D-alanine--D-alanine ligase #=GS U7TS51/110-163 DR GENE3D; b130298d83f26c3553f69387b2afa5d4/110-163; #=GS U7TS51/110-163 DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; #=GS U7TS51/110-163 DR EC; 6.3.2.4; #=GF TC 76.4 1.0E-24 #=GF SQ 25 Q8RDQ4/110-163 -TP--------------KSYRPVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKL----AKPIIEDYI A0A0F7WS55/583-654 VVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEES- Q821S4/584-656 VVPYQPLTLPTWKRTPELCMRRILETFTFPMFVKTAHLGSSIGVFEVHNETELKAKISEAFLYDTDVFIEESR A0A0F7XRM6/583-654 VVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEES- A0A0F7XK32/583-654 VVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEES- Q9Z701/583-654 VVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEES- Q5L525/583-655 VVPYQPLTLHAWKRTPELCMHKIAEAFTFPMFVKTAHLGSSIGVFEVHNEEELKAKISEAFLYDTDIFIEESR W8JRL7/585-656 VVPYQALTLRAWKRSPELCLRNILIAFSFPMFVKTAHLGSSIGIFEVHNEQELQEKISEAFLYDTDVFIEES- S7KRM6/585-656 VVPYQALTLRAWKRSPELCLRNILIAFSFPMFVKTAHLGSSIGIFEVHNEQELQEKISEAFLYDTDVFIEES- S7ISU7/583-654 VVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHNEEELKAKISEAFLYDTDIFIEES- Q255W3/584-656 VVPYQPLTLHAWKRTPDLCMRRILETFTFPMFVKAAHLGSSIGVFEVHNEEELKSKISEAFQCDTDIFIEESR V8TSS4/582-653 VVPYQELSLFAWKRNPEGCIRSILDIFTFPMVVKSSHLGSSLGIFLVNNKEELEEKISEAFLYDTDIFIEES- A0A1D3CPI9/583-654 VVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHNEEELKAKISEAFLYDTDIFIEES- A0A0E2JBM0/583-654 VVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHNEEELKAKISEAFLYDTDIFIEES- S7K4D7/583-654 VVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHNEEELKAKISEAFLYDTDIFIEES- Q8D2Y5/153-221 VVP----SITLYYENYKKKINKIINNIKFPCCIKPSNQGSSFGVNVANDFISLKESIDVAFLYSKKILIEPFI A0A0E2J1W7/439-510 VVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHNEEELKAKISEAFLYDTDIFIEES- X8HHW3/110-163 -TP--------------KSYRTVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKL----AKPIIEDYI A0A0S2ZVD4/110-163 -TP--------------KSYRTVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKL----AKPIIEDYI X7SDF0/110-163 -TP--------------KSYRTVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKL----AKPIIEDYI A0A1F0DYR5/110-163 -TP--------------KSYRTVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKL----AKPIIEDYI A0A0X3Y340/110-163 -TP--------------KSYRTVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKL----AKPIIEDYI D5RBA9/110-163 -TP--------------KSYRTVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKL----AKPIIEDYI A5TWY3/110-163 -TP--------------KSYRTVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKL----AKPIIEDYI U7TS51/110-163 -TP--------------KSYRTVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKL----AKPIIEDYI #=GC scorecons 3592212121122212245454637544995579555499949584557578556575553222654589652 #=GC scorecons_70 __*___________________*_*___**__**____***_*_*___*_**____*___________***__ #=GC scorecons_80 __*_________________________**___*____***_*_*___*__*________________**___ #=GC scorecons_90 __*_________________________**___*____***_*_*______*_________________*___ //