# STOCKHOLM 1.0 #=GF ID 3.30.1490.180/FF/766 #=GF DE DNA-directed RNA polymerase II subunit RPB1 #=GF AC 3.30.1490.180/FF/766 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 65.953 #=GS I6ZHJ5/345-405 AC I6ZHJ5 #=GS I6ZHJ5/345-405 OS Encephalitozoon romaleae SJ-2008 #=GS I6ZHJ5/345-405 DE DNA-directed RNA polymerase subunit #=GS I6ZHJ5/345-405 DR GENE3D; 12fdba86a80c084d79832492e872a612/345-405; #=GS I6ZHJ5/345-405 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Unikaryonidae; Encephalitozoon; Encephalitozoon romaleae; #=GS I6ZHJ5/345-405 DR EC; 2.7.7.6; #=GS F8V7J7/345-405 AC F8V7J7 #=GS F8V7J7/345-405 OS Encephalitozoon romaleae #=GS F8V7J7/345-405 DE DNA-directed RNA polymerase subunit #=GS F8V7J7/345-405 DR GENE3D; 12fdba86a80c084d79832492e872a612/345-405; #=GS F8V7J7/345-405 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Unikaryonidae; Encephalitozoon; Encephalitozoon romaleae; #=GS F8V7J7/345-405 DR EC; 2.7.7.6; #=GS M4MCR9/264-324 AC M4MCR9 #=GS M4MCR9/264-324 OS Nosema bombycis #=GS M4MCR9/264-324 DE DNA-directed RNA polymerase subunit #=GS M4MCR9/264-324 DR GENE3D; 27386a10b9079102b85a2f2e1f26e3e0/264-324; #=GS M4MCR9/264-324 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema bombycis; #=GS M4MCR9/264-324 DR EC; 2.7.7.6; #=GS A5J2B1/270-330 AC A5J2B1 #=GS A5J2B1/270-330 OS Nosema bombycis #=GS A5J2B1/270-330 DE DNA-directed RNA polymerase subunit #=GS A5J2B1/270-330 DR GENE3D; 2b51431c4751389024750dfd9f001bae/270-330; #=GS A5J2B1/270-330 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema bombycis; #=GS A5J2B1/270-330 DR EC; 2.7.7.6; #=GS M4MCR0/264-324 AC M4MCR0 #=GS M4MCR0/264-324 OS Nosema bombycis #=GS M4MCR0/264-324 DE DNA-directed RNA polymerase subunit #=GS M4MCR0/264-324 DR GENE3D; 2e4818268b1a16e35afcf6432837ffae/264-324; #=GS M4MCR0/264-324 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema bombycis; #=GS M4MCR0/264-324 DR EC; 2.7.7.6; #=GS M4MCR1/264-324 AC M4MCR1 #=GS M4MCR1/264-324 OS Nosema bombycis #=GS M4MCR1/264-324 DE DNA-directed RNA polymerase subunit #=GS M4MCR1/264-324 DR GENE3D; 3dcede64d0b5e75167b232eca04929e7/264-324; #=GS M4MCR1/264-324 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema bombycis; #=GS M4MCR1/264-324 DR EC; 2.7.7.6; #=GS Q8SSC4/345-405 AC Q8SSC4 #=GS Q8SSC4/345-405 OS Encephalitozoon cuniculi GB-M1 #=GS Q8SSC4/345-405 DE DNA-directed RNA polymerase II subunit RPB1 #=GS Q8SSC4/345-405 DR GENE3D; 44a663ded28d32265bb302614630d10e/345-405; #=GS Q8SSC4/345-405 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Unikaryonidae; Encephalitozoon; Encephalitozoon cuniculi; #=GS Q8SSC4/345-405 DR EC; 2.7.7.6; #=GS A0A0B2UGF4/345-405 AC A0A0B2UGF4 #=GS A0A0B2UGF4/345-405 OS Ordospora colligata OC4 #=GS A0A0B2UGF4/345-405 DE DNA-directed RNA polymerase subunit #=GS A0A0B2UGF4/345-405 DR GENE3D; 4b8f5ce7bdd269fe76525c4c7fec305c/345-405; #=GS A0A0B2UGF4/345-405 DR ORG; Eukaryota; Fungi; Microsporidia; Ordosporidae; Ordospora; Ordospora colligata; #=GS A0A0B2UGF4/345-405 DR EC; 2.7.7.6; #=GS A5J2B4/270-330 AC A5J2B4 #=GS A5J2B4/270-330 OS Nosema trichoplusiae #=GS A5J2B4/270-330 DE DNA-directed RNA polymerase subunit #=GS A5J2B4/270-330 DR GENE3D; 5a528aef9ce456fef6a2feb25e6bc01e/270-330; #=GS A5J2B4/270-330 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema trichoplusiae; #=GS A5J2B4/270-330 DR EC; 2.7.7.6; #=GS I6UBI0/345-405 AC I6UBI0 #=GS I6UBI0/345-405 OS Encephalitozoon hellem ATCC 50504 #=GS I6UBI0/345-405 DE DNA-directed RNA polymerase subunit #=GS I6UBI0/345-405 DR GENE3D; 5b0ee837ad3d250651c4bf71b09b475f/345-405; #=GS I6UBI0/345-405 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Unikaryonidae; Encephalitozoon; Encephalitozoon hellem; #=GS I6UBI0/345-405 DR EC; 2.7.7.6; #=GS A0A0B4ZX21/136-196 AC A0A0B4ZX21 #=GS A0A0B4ZX21/136-196 OS Nosema ceranae #=GS A0A0B4ZX21/136-196 DE DNA-directed RNA polymerase subunit #=GS A0A0B4ZX21/136-196 DR GENE3D; 5fe43bb52125fc0309a11057497e1c50/136-196; #=GS A0A0B4ZX21/136-196 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema ceranae; #=GS A0A0B4ZX21/136-196 DR EC; 2.7.7.6; #=GS M4MEJ9/264-324 AC M4MEJ9 #=GS M4MEJ9/264-324 OS Nosema bombycis #=GS M4MEJ9/264-324 DE DNA-directed RNA polymerase subunit #=GS M4MEJ9/264-324 DR GENE3D; 6cdfbf4744cfec6c9357ae147be7ad8d/264-324; #=GS M4MEJ9/264-324 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema bombycis; #=GS M4MEJ9/264-324 DR EC; 2.7.7.6; #=GS K7N9H6/255-315 AC K7N9H6 #=GS K7N9H6/255-315 OS Nosema sp. CO 05-11 #=GS K7N9H6/255-315 DE DNA-directed RNA polymerase subunit #=GS K7N9H6/255-315 DR GENE3D; 7fa465064d93c592cd91ff036e1f1653/255-315; #=GS K7N9H6/255-315 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema sp. CO 05-11; #=GS K7N9H6/255-315 DR EC; 2.7.7.6; #=GS K7N8D3/255-315 AC K7N8D3 #=GS K7N8D3/255-315 OS Nosema fumiferanae #=GS K7N8D3/255-315 DE DNA-directed RNA polymerase subunit #=GS K7N8D3/255-315 DR GENE3D; 87ccb6644e7438444780f79e5fa1624d/255-315; #=GS K7N8D3/255-315 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema fumiferanae; #=GS K7N8D3/255-315 DR EC; 2.7.7.6; #=GS K7N8I6/269-329 AC K7N8I6 #=GS K7N8I6/269-329 OS Nosema sp. CPP 04-02 #=GS K7N8I6/269-329 DE DNA-directed RNA polymerase subunit #=GS K7N8I6/269-329 DR GENE3D; 8b3e9e7de52a87463f93ec000901a5df/269-329; #=GS K7N8I6/269-329 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema sp. CPP 04-02; #=GS K7N8I6/269-329 DR EC; 2.7.7.6; #=GS A0A068LJK6/265-325 AC A0A068LJK6 #=GS A0A068LJK6/265-325 OS Nosema sp. PA #=GS A0A068LJK6/265-325 DE DNA-directed RNA polymerase subunit #=GS A0A068LJK6/265-325 DR GENE3D; 8ee59b6ea45d76a46e5ea0eed0f4bbd4/265-325; #=GS A0A068LJK6/265-325 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema sp. PA; #=GS A0A068LJK6/265-325 DR EC; 2.7.7.6; #=GS R0KR27/309-369 AC R0KR27 #=GS R0KR27/309-369 OS Nosema bombycis CQ1 #=GS R0KR27/309-369 DE DNA-directed RNA polymerase subunit #=GS R0KR27/309-369 DR GENE3D; a31dc7a0582de61775281bcf2cdecccd/309-369; #=GS R0KR27/309-369 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema bombycis; #=GS R0KR27/309-369 DR EC; 2.7.7.6; #=GS M4MKW8/264-324 AC M4MKW8 #=GS M4MKW8/264-324 OS Nosema bombycis #=GS M4MKW8/264-324 DE DNA-directed RNA polymerase subunit #=GS M4MKW8/264-324 DR GENE3D; bcab50ba4177ba20b8c7d5dfce437843/264-324; #=GS M4MKW8/264-324 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema bombycis; #=GS M4MKW8/264-324 DR EC; 2.7.7.6; #=GS E0S629/345-405 AC E0S629 #=GS E0S629/345-405 OS Encephalitozoon intestinalis ATCC 50506 #=GS E0S629/345-405 DE DNA-directed RNA polymerase subunit #=GS E0S629/345-405 DR GENE3D; c77c7288dcf7545638332ae0f7d69559/345-405; #=GS E0S629/345-405 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Unikaryonidae; Encephalitozoon; Encephalitozoon intestinalis; #=GS E0S629/345-405 DR EC; 2.7.7.6; #=GS K7N919/255-315 AC K7N919 #=GS K7N919/255-315 OS Nosema disstriae #=GS K7N919/255-315 DE DNA-directed RNA polymerase subunit #=GS K7N919/255-315 DR GENE3D; ca73a073301908b0686456d232d6e87c/255-315; #=GS K7N919/255-315 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema disstriae; #=GS K7N919/255-315 DR EC; 2.7.7.6; #=GS A5J2B2/262-322 AC A5J2B2 #=GS A5J2B2/262-322 OS Nosema empoascae #=GS A5J2B2/262-322 DE DNA-directed RNA polymerase subunit #=GS A5J2B2/262-322 DR GENE3D; d1bca7c6c019b704faf21d77f77c1512/262-322; #=GS A5J2B2/262-322 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema empoascae; #=GS A5J2B2/262-322 DR EC; 2.7.7.6; #=GS M4MG63/264-324 AC M4MG63 #=GS M4MG63/264-324 OS Nosema bombycis #=GS M4MG63/264-324 DE DNA-directed RNA polymerase subunit #=GS M4MG63/264-324 DR GENE3D; d4214c8e3ed24b36ab66ef64c203dd10/264-324; #=GS M4MG63/264-324 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Nosematidae; Nosema; Nosema bombycis; #=GS M4MG63/264-324 DR EC; 2.7.7.6; #=GS M1K9E1/345-405 AC M1K9E1 #=GS M1K9E1/345-405 OS Encephalitozoon cuniculi #=GS M1K9E1/345-405 DE DNA-directed RNA polymerase subunit #=GS M1K9E1/345-405 DR GENE3D; ed4fd7475d81e89770d61820182bf290/345-405; #=GS M1K9E1/345-405 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Unikaryonidae; Encephalitozoon; Encephalitozoon cuniculi; #=GS M1K9E1/345-405 DR EC; 2.7.7.6; #=GS F8V7L0/345-405 AC F8V7L0 #=GS F8V7L0/345-405 OS Encephalitozoon hellem #=GS F8V7L0/345-405 DE DNA-directed RNA polymerase subunit #=GS F8V7L0/345-405 DR GENE3D; edadb247e2fdcde22156c23f56eb14a3/345-405; #=GS F8V7L0/345-405 DR ORG; Eukaryota; Fungi; Microsporidia; Apansporoblastina; Unikaryonidae; Encephalitozoon; Encephalitozoon hellem; #=GS F8V7L0/345-405 DR EC; 2.7.7.6; #=GS P41556/350-421 AC P41556 #=GS P41556/350-421 OS Methanococcus vannielii SB #=GS P41556/350-421 DE DNA-directed RNA polymerase subunit A' #=GS P41556/350-421 DR GENE3D; 8ca98fb293dd80294404fe5e70f9e4d8/350-421; #=GS P41556/350-421 DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus; Methanococcus vannielii; #=GS P41556/350-421 DR EC; 2.7.7.6; #=GF TC 111.7 6.2E-36 #=GF SQ 25 I6ZHJ5/345-405 HTFPEKVTSFNIDKLEKLVRTGPNEHPGANYVLR----SDGQKIDLNFNKSDI-------RLEEGYIVERHM F8V7J7/345-405 HTFPEKVTSFNIDKLEKLVRTGPNEHPGANYVLR----SDGQKIDLNFNKSDI-------RLEEGYIVERHM M4MCR9/264-324 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM A5J2B1/270-330 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM M4MCR0/264-324 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM M4MCR1/264-324 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM Q8SSC4/345-405 HTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLR----SDGQKIDLNFNRSDI-------RLEEGYVVERHM A0A0B2UGF4/345-405 HTFPEKVTSFNIDKLNKLVKMGPNEHPGANYVIR----SDGQKIDLSFNRSDI-------RLEEGYVVERHM A5J2B4/270-330 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM I6UBI0/345-405 HTFPEKVTSFNIDRLEKLVRTGPNEHPGANYVLR----SDGQKIDLNFNKSDI-------KLEEGYVVERHM A0A0B4ZX21/136-196 HTFPETITPYNIERLTRLVSNGPNEHPGANYVIR----SDGQRIDLNFNRGDI-------KLEEGYIVERHM M4MEJ9/264-324 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM K7N9H6/255-315 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM K7N8D3/255-315 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM K7N8I6/269-329 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM A0A068LJK6/265-325 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM R0KR27/309-369 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM M4MKW8/264-324 HTFPEKITPFNIEKLEKLVANGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM E0S629/345-405 HTFPERVTSFNIDKLEKLVRAGPNEHPGANYVLR----SDGQKIDLNFNRSDI-------RLEEGYIVERHM K7N919/255-315 HTFPEKITPFNIEKLEKLVSNGPNEYPGANYVIR----TDGQRIDLNFNRGDI-------KLEEGYIVERHM A5J2B2/262-322 HTFPEKITPFNVQRLEKLVENGPNVYPGANYVIR----NDGQRIDLKFNRGDI-------KLEEGYVVERHM M4MG63/264-324 HTFPEKITPFNIEKLEKLVANGPNECPGANYVIR----TDGRRIDLNFNRGDI-------KLEEGYIVERHM M1K9E1/345-405 HTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLR----SDGQKIDLNFNRSDI-------RLEEGYVVERHM F8V7L0/345-405 HTFPEKVTSFNIDRLEKLVRTGPNEHPGANYVLR----SDGQKIDLNFNKSDI-------KLEEGYVVERHM P41556/350-421 LTVPEKVTPYNIERIRKLIENGSDKHPGVNYVIKKVKTKDGKEEEYKIKITDTNKKMWVENIVDGMVVERHL #=GC scorecons 697998796798677689745977669979996700004997567667755970000000676796799997 #=GC scorecons_70 ***************_***__*************_____***_******__**________*********** #=GC scorecons_80 _*_***_*_***__*_***__***__******_*_____**___*___*__**________*_**__***** #=GC scorecons_90 _*_**__*__**____**___*____**_***_______**__________*____________*__****_ //