# STOCKHOLM 1.0
#=GF ID 3.30.1490.180/FF/595
#=GF DE DNA-directed RNA polymerase
#=GF AC 3.30.1490.180/FF/595
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 24.585
#=GS Q57YU2/381-441      AC Q57YU2
#=GS Q57YU2/381-441      OS Trypanosoma brucei brucei TREU927
#=GS Q57YU2/381-441      DE DNA-directed RNA polymerase subunit
#=GS Q57YU2/381-441      DR GENE3D; ee0e9c2204ec5a601f58824b198ef1be/381-441; 
#=GS Q57YU2/381-441      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q57YU2/381-441      DR GO; GO:0005634; 
#=GS Q57YU2/381-441      DR EC; 2.7.7.6; 
#=GS G0ULQ7/382-442      AC G0ULQ7
#=GS G0ULQ7/382-442      OS Trypanosoma congolense IL3000
#=GS G0ULQ7/382-442      DE DNA-directed RNA polymerase subunit
#=GS G0ULQ7/382-442      DR GENE3D; 02b8e7aa6ce03b66a274698288dd09aa/382-442; 
#=GS G0ULQ7/382-442      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense; 
#=GS G0ULQ7/382-442      DR EC; 2.7.7.6; 
#=GS Q95W43/365-425      AC Q95W43
#=GS Q95W43/365-425      OS Trypanosoma cruzi
#=GS Q95W43/365-425      DE DNA-directed RNA polymerase subunit
#=GS Q95W43/365-425      DR GENE3D; 1b1b5e30520b0895e064325fef87247c/365-425; 
#=GS Q95W43/365-425      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; 
#=GS Q95W43/365-425      DR EC; 2.7.7.6; 
#=GS A0A061J0Q4/365-425  AC A0A061J0Q4
#=GS A0A061J0Q4/365-425  OS Trypanosoma rangeli SC58
#=GS A0A061J0Q4/365-425  DE DNA-directed RNA polymerase subunit
#=GS A0A061J0Q4/365-425  DR GENE3D; 2a374ab7e5084cc4168082117cd1d101/365-425; 
#=GS A0A061J0Q4/365-425  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Herpetosoma; Trypanosoma rangeli; 
#=GS A0A061J0Q4/365-425  DR EC; 2.7.7.6; 
#=GS G0TZQ4/378-438      AC G0TZQ4
#=GS G0TZQ4/378-438      OS Trypanosoma vivax Y486
#=GS G0TZQ4/378-438      DE DNA-directed RNA polymerase subunit
#=GS G0TZQ4/378-438      DR GENE3D; 2c1c191ac78d265ce1c3a5462633b237/378-438; 
#=GS G0TZQ4/378-438      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Duttonella; Trypanosoma vivax; 
#=GS G0TZQ4/378-438      DR EC; 2.7.7.6; 
#=GS Q26794/381-441      AC Q26794
#=GS Q26794/381-441      OS Trypanosoma brucei
#=GS Q26794/381-441      DE DNA-directed RNA polymerase subunit
#=GS Q26794/381-441      DR GENE3D; 3d0356c2babc48a16136ef34507bfbe0/381-441; 
#=GS Q26794/381-441      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; 
#=GS Q26794/381-441      DR EC; 2.7.7.6; 
#=GS V5B7G2/335-395      AC V5B7G2
#=GS V5B7G2/335-395      OS Trypanosoma cruzi Dm28c
#=GS V5B7G2/335-395      DE DNA-directed RNA polymerase subunit
#=GS V5B7G2/335-395      DR GENE3D; 48c68ebcab73a3967b23c33ef171e998/335-395; 
#=GS V5B7G2/335-395      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; 
#=GS V5B7G2/335-395      DR EC; 2.7.7.6; 
#=GS P17546/382-442      AC P17546
#=GS P17546/382-442      OS Trypanosoma brucei brucei
#=GS P17546/382-442      DE DNA-directed RNA polymerase II subunit RPB1-A
#=GS P17546/382-442      DR GENE3D; 52eb009570d4708a047e54bd7fd9d69a/382-442; 
#=GS P17546/382-442      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS P17546/382-442      DR EC; 2.7.7.6; 
#=GS K2NKG9/365-425      AC K2NKG9
#=GS K2NKG9/365-425      OS Trypanosoma cruzi marinkellei
#=GS K2NKG9/365-425      DE DNA-directed RNA polymerase subunit
#=GS K2NKG9/365-425      DR GENE3D; 53e5f8c3d14dee81623f693a2c0901e6/365-425; 
#=GS K2NKG9/365-425      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; Trypanosoma cruzi marinkellei; 
#=GS K2NKG9/365-425      DR EC; 2.7.7.6; 
#=GS G0UT19/382-442      AC G0UT19
#=GS G0UT19/382-442      OS Trypanosoma congolense IL3000
#=GS G0UT19/382-442      DE DNA-directed RNA polymerase subunit
#=GS G0UT19/382-442      DR GENE3D; 86a1887fa84dfb5628fc32a9a7406831/382-442; 
#=GS G0UT19/382-442      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense; 
#=GS G0UT19/382-442      DR EC; 2.7.7.6; 
#=GS C9ZWN4/381-441      AC C9ZWN4
#=GS C9ZWN4/381-441      OS Trypanosoma brucei gambiense DAL972
#=GS C9ZWN4/381-441      DE DNA-directed RNA polymerase subunit
#=GS C9ZWN4/381-441      DR GENE3D; 966ada366f6b700de9eafe4b4bc34c20/381-441; 
#=GS C9ZWN4/381-441      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei gambiense; 
#=GS C9ZWN4/381-441      DR EC; 2.7.7.6; 
#=GS P17545/382-442      AC P17545
#=GS P17545/382-442      OS Trypanosoma brucei brucei
#=GS P17545/382-442      DE DNA-directed RNA polymerase II subunit RPB1-B
#=GS P17545/382-442      DR GENE3D; d74805d4db09f90dea27c066f67c5d8d/382-442; 
#=GS P17545/382-442      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS P17545/382-442      DR EC; 2.7.7.6; 
#=GS Q4DDX5/365-425      AC Q4DDX5
#=GS Q4DDX5/365-425      OS Trypanosoma cruzi strain CL Brener
#=GS Q4DDX5/365-425      DE DNA-directed RNA polymerase subunit
#=GS Q4DDX5/365-425      DR GENE3D; f5d659b971f470368c8425e61f800fcb/365-425; 
#=GS Q4DDX5/365-425      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; 
#=GS Q4DDX5/365-425      DR EC; 2.7.7.6; 
#=GS Q26791/381-441      AC Q26791
#=GS Q26791/381-441      OS Trypanosoma brucei
#=GS Q26791/381-441      DE DNA-directed RNA polymerase subunit
#=GS Q26791/381-441      DR GENE3D; f9842e06f7c7979fc5d38f9a5f4cf16b/381-441; 
#=GS Q26791/381-441      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; 
#=GS Q26791/381-441      DR EC; 2.7.7.6; 
#=GS C9ZMF2/381-441      AC C9ZMF2
#=GS C9ZMF2/381-441      OS Trypanosoma brucei gambiense DAL972
#=GS C9ZMF2/381-441      DE DNA-directed RNA polymerase subunit
#=GS C9ZMF2/381-441      DR GENE3D; f9842e06f7c7979fc5d38f9a5f4cf16b/381-441; 
#=GS C9ZMF2/381-441      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei gambiense; 
#=GS C9ZMF2/381-441      DR EC; 2.7.7.6; 
#=GS Q584K3/381-441      AC Q584K3
#=GS Q584K3/381-441      OS Trypanosoma brucei brucei TREU927
#=GS Q584K3/381-441      DE DNA-directed RNA polymerase subunit
#=GS Q584K3/381-441      DR GENE3D; f9eca0c30443b7c98b6094c6852858b0/381-441; 
#=GS Q584K3/381-441      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q584K3/381-441      DR EC; 2.7.7.6; 
#=GS A0A1G4I4P8/381-441  AC A0A1G4I4P8
#=GS A0A1G4I4P8/381-441  OS Trypanosoma equiperdum
#=GS A0A1G4I4P8/381-441  DE DNA-directed RNA polymerase subunit
#=GS A0A1G4I4P8/381-441  DR GENE3D; f9eca0c30443b7c98b6094c6852858b0/381-441; 
#=GS A0A1G4I4P8/381-441  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma equiperdum; 
#=GS A0A1G4I4P8/381-441  DR EC; 2.7.7.6; 
#=GF TC 151.1 5.2E-48
#=GF SQ 17
Q57YU2/381-441              LTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
G0ULQ7/382-442              LTFPERVNTVNKKRLTEFVRREVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDIVERHV
Q95W43/365-425              LTFPERVSAVNKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHV
A0A061J0Q4/365-425          LTFPERVNAINKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHV
G0TZQ4/378-438              LTFPERVSAVNRKRLTEFVRRTVYPSANYVHHPNGTTTKLALLRDRTKVTLNVGDVVERHV
Q26794/381-441              LTFPERVNTINKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
V5B7G2/335-395              LTFPERVSAVNKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHL
P17546/382-442              LTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
K2NKG9/365-425              LTFPERVNAINKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHV
G0UT19/382-442              LTFPERVNTVNKKRLTEFVRREVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDIVERHV
C9ZWN4/381-441              LTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
P17545/382-442              LTFPERVNTINKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
Q4DDX5/365-425              LTFPERVSAVNKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHV
Q26791/381-441              LTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
C9ZMF2/381-441              LTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
Q584K3/381-441              LTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
A0A1G4I4P8/381-441          LTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHV
#=GC scorecons              9999999667989999996995999999989999996999995999799999899899998
#=GC scorecons_70           ******************_**_**************_*****_******************
#=GC scorecons_80           *******__*********_**_**************_*****_******************
#=GC scorecons_90           *******___********_**_**************_*****_***_**************
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