# STOCKHOLM 1.0
#=GF ID 3.30.1360.10/FF/2909
#=GF DE DNA-directed RNA polymerase subunit D
#=GF AC 3.30.1360.10/FF/2909
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 21.627
#=GS B0R4Y2/11-42_144-153_210-242      AC B0R4Y2
#=GS B0R4Y2/11-42_144-153_210-242      OS Halobacterium salinarum R1
#=GS B0R4Y2/11-42_144-153_210-242      DE DNA-directed RNA polymerase subunit D
#=GS B0R4Y2/11-42_144-153_210-242      DR GENE3D; f06a4ff0e72bf833167819637c4020de/11-42_144-153_210-242; 
#=GS B0R4Y2/11-42_144-153_210-242      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; 
#=GS B0R4Y2/11-42_144-153_210-242      DR EC; 2.7.7.6; 
#=GS Q00813/10-41_144-153_221-253      AC Q00813
#=GS Q00813/10-41_144-153_221-253      OS Haloarcula marismortui ATCC 43049
#=GS Q00813/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS Q00813/10-41_144-153_221-253      DR GENE3D; e9bcc9b6d906478cc843e8df87d11d57/10-41_144-153_221-253; 
#=GS Q00813/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula marismortui; 
#=GS Q00813/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GS M0LD87/10-41_144-153_221-253      AC M0LD87
#=GS M0LD87/10-41_144-153_221-253      OS Haloarcula japonica DSM 6131
#=GS M0LD87/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS M0LD87/10-41_144-153_221-253      DR GENE3D; 523ba1015ee8412d4140fe88ff4d45eb/10-41_144-153_221-253; 
#=GS M0LD87/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula japonica; 
#=GS M0LD87/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GS A0A0M9AL84/10-41_144-153_221-253  AC A0A0M9AL84
#=GS A0A0M9AL84/10-41_144-153_221-253  OS Haloarcula rubripromontorii
#=GS A0A0M9AL84/10-41_144-153_221-253  DE DNA-directed RNA polymerase subunit D
#=GS A0A0M9AL84/10-41_144-153_221-253  DR GENE3D; 523ba1015ee8412d4140fe88ff4d45eb/10-41_144-153_221-253; 
#=GS A0A0M9AL84/10-41_144-153_221-253  DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula rubripromontorii; 
#=GS A0A0M9AL84/10-41_144-153_221-253  DR EC; 2.7.7.6; 
#=GS Q9HQJ4/11-42_144-153_210-242      AC Q9HQJ4
#=GS Q9HQJ4/11-42_144-153_210-242      OS Halobacterium salinarum NRC-1
#=GS Q9HQJ4/11-42_144-153_210-242      DE DNA-directed RNA polymerase subunit D
#=GS Q9HQJ4/11-42_144-153_210-242      DR GENE3D; f06a4ff0e72bf833167819637c4020de/11-42_144-153_210-242; 
#=GS Q9HQJ4/11-42_144-153_210-242      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; 
#=GS Q9HQJ4/11-42_144-153_210-242      DR EC; 2.7.7.6; 
#=GS M0JHC6/10-41_144-153_221-253      AC M0JHC6
#=GS M0JHC6/10-41_144-153_221-253      OS Haloarcula vallismortis ATCC 29715
#=GS M0JHC6/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS M0JHC6/10-41_144-153_221-253      DR GENE3D; 67dd45bb321784362118f4287755ca87/10-41_144-153_221-253; 
#=GS M0JHC6/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula vallismortis; 
#=GS M0JHC6/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GS M0JW64/10-41_144-153_221-253      AC M0JW64
#=GS M0JW64/10-41_144-153_221-253      OS Haloarcula sinaiiensis ATCC 33800
#=GS M0JW64/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS M0JW64/10-41_144-153_221-253      DR GENE3D; e9bcc9b6d906478cc843e8df87d11d57/10-41_144-153_221-253; 
#=GS M0JW64/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula sinaiiensis; 
#=GS M0JW64/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GS G0HVU2/10-41_144-153_221-253      AC G0HVU2
#=GS G0HVU2/10-41_144-153_221-253      OS Haloarcula hispanica ATCC 33960
#=GS G0HVU2/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS G0HVU2/10-41_144-153_221-253      DR GENE3D; e9bcc9b6d906478cc843e8df87d11d57/10-41_144-153_221-253; 
#=GS G0HVU2/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula hispanica; 
#=GS G0HVU2/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GS M0KPX6/10-41_144-153_221-253      AC M0KPX6
#=GS M0KPX6/10-41_144-153_221-253      OS Haloarcula californiae ATCC 33799
#=GS M0KPX6/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS M0KPX6/10-41_144-153_221-253      DR GENE3D; e9bcc9b6d906478cc843e8df87d11d57/10-41_144-153_221-253; 
#=GS M0KPX6/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula californiae; 
#=GS M0KPX6/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GS M0KR08/10-41_144-153_221-253      AC M0KR08
#=GS M0KR08/10-41_144-153_221-253      OS Haloarcula argentinensis DSM 12282
#=GS M0KR08/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS M0KR08/10-41_144-153_221-253      DR GENE3D; e9bcc9b6d906478cc843e8df87d11d57/10-41_144-153_221-253; 
#=GS M0KR08/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula argentinensis; 
#=GS M0KR08/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GS A0A0B5GKJ7/10-41_144-153_221-253  AC A0A0B5GKJ7
#=GS A0A0B5GKJ7/10-41_144-153_221-253  OS Haloarcula sp. CBA1115
#=GS A0A0B5GKJ7/10-41_144-153_221-253  DE DNA-directed RNA polymerase subunit D
#=GS A0A0B5GKJ7/10-41_144-153_221-253  DR GENE3D; e9bcc9b6d906478cc843e8df87d11d57/10-41_144-153_221-253; 
#=GS A0A0B5GKJ7/10-41_144-153_221-253  DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula sp. CBA1115; 
#=GS A0A0B5GKJ7/10-41_144-153_221-253  DR EC; 2.7.7.6; 
#=GS V5TKP3/10-41_144-153_221-253      AC V5TKP3
#=GS V5TKP3/10-41_144-153_221-253      OS Haloarcula hispanica N601
#=GS V5TKP3/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS V5TKP3/10-41_144-153_221-253      DR GENE3D; e9bcc9b6d906478cc843e8df87d11d57/10-41_144-153_221-253; 
#=GS V5TKP3/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula hispanica; 
#=GS V5TKP3/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GS M0KJ37/10-41_144-153_221-253      AC M0KJ37
#=GS M0KJ37/10-41_144-153_221-253      OS Haloarcula amylolytica JCM 13557
#=GS M0KJ37/10-41_144-153_221-253      DE DNA-directed RNA polymerase subunit D
#=GS M0KJ37/10-41_144-153_221-253      DR GENE3D; e9bcc9b6d906478cc843e8df87d11d57/10-41_144-153_221-253; 
#=GS M0KJ37/10-41_144-153_221-253      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula; Haloarcula amylolytica; 
#=GS M0KJ37/10-41_144-153_221-253      DR EC; 2.7.7.6; 
#=GF TC 162.5 4.0E-52
#=GF SQ 13
B0R4Y2/11-42_144-153_210-242              VDRDDREARFVVRNITPAFANGIRRAILVDVPQGGVAVGYRHGAFVFHVESDGSMPVEELVLRAVDTLVDRADEL
Q00813/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
M0LD87/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
A0A0M9AL84/10-41_144-153_221-253          VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
Q9HQJ4/11-42_144-153_210-242              VDRDDREARFVVRNITPAFANGIRRAILVDVPQGGVAVGYRHGAFVFHVESDGSMPVEELVLRAVDTLVDRADEL
M0JHC6/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
M0JW64/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
G0HVU2/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
M0KPX6/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
M0KR08/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
A0A0B5GKJ7/10-41_144-153_221-253          VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
V5TKP3/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
M0KJ37/10-41_144-153_221-253              VERGEREARILVRGITPAFANGIRRAMVADVPQGGVAVGYRHNAFVFHVETDGSFTTEELVLRAVETLRDRATEL
#=GC scorecons                            969569999569959999999999996659999999999999599999995999555999999996994999599
#=GC scorecons_70                         ***_*****__**_*************__*************_*******_***___***********_***_**
#=GC scorecons_80                         *_*__****__**_************___*************_*******_***___********_**_***_**
#=GC scorecons_90                         *_*__****__**_************___*************_*******_***___********_**_***_**
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