# STOCKHOLM 1.0 #=GF ID 3.10.450.50/FF/23243 #=GF DE Sigma-70 family RNA polymerase sigma factor SigI #=GF AC 3.10.450.50/FF/23243 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 75.027 #=GS Q10083/2-120 AC Q10083 #=GS Q10083/2-120 OS Schizosaccharomyces pombe 972h- #=GS Q10083/2-120 DE Uncharacterized protein C11D3.04c #=GS Q10083/2-120 DR GENE3D; d33aea94c73c423b1cc1a2f4efa633bd/2-120; #=GS Q10083/2-120 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; #=GS Q10083/2-120 DR GO; GO:0005634; GO:0005829; GO:0009975; #=GS O50445/169-289 AC O50445 #=GS O50445/169-289 OS Mycobacterium tuberculosis H37Rv #=GS O50445/169-289 DE RNA polymerase sigma factor SigI #=GS O50445/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS O50445/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS O50445/169-289 DR GO; GO:0009409; #=GS P9WGH3/169-289 AC P9WGH3 #=GS P9WGH3/169-289 OS Mycobacterium tuberculosis H37Rv #=GS P9WGH3/169-289 DE Probable ECF RNA polymerase sigma factor SigI #=GS P9WGH3/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS P9WGH3/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS A0A1A3QHH0/172-290 AC A0A1A3QHH0 #=GS A0A1A3QHH0/172-290 OS Mycobacterium sp. 1081908.1 #=GS A0A1A3QHH0/172-290 DE RNA polymerase subunit sigma #=GS A0A1A3QHH0/172-290 DR GENE3D; 1783f5674becf74f411217bd41292b12/172-290; #=GS A0A1A3QHH0/172-290 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. 1081908.1; #=GS A0A1A0UAE7/175-292 AC A0A1A0UAE7 #=GS A0A1A0UAE7/175-292 OS Mycobacterium sp. 852014-50255_SCH5639931 #=GS A0A1A0UAE7/175-292 DE RNA polymerase subunit sigma #=GS A0A1A0UAE7/175-292 DR GENE3D; 5741efc907cb33cb272b2cd3f9d64492/175-292; #=GS A0A1A0UAE7/175-292 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. 852014-50255_SCH5639931; #=GS A0A0T9B527/67-188 AC A0A0T9B527 #=GS A0A0T9B527/67-188 OS Mycobacterium tuberculosis #=GS A0A0T9B527/67-188 DE Alternative RNA polymerase sigma factor SIGI #=GS A0A0T9B527/67-188 DR GENE3D; 5c4339cdb902e344e8a55476441b0a9c/67-188; #=GS A0A0T9B527/67-188 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS A0A0H3L828/169-289 AC A0A0H3L828 #=GS A0A0H3L828/169-289 OS Mycobacterium tuberculosis str. Erdman = ATCC 35801 #=GS A0A0H3L828/169-289 DE RNA polymerase sigma factor #=GS A0A0H3L828/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS A0A0H3L828/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS A5U1N7/169-289 AC A5U1N7 #=GS A5U1N7/169-289 OS Mycobacterium tuberculosis H37Ra #=GS A5U1N7/169-289 DE RNA polymerase sigma-70 factor #=GS A5U1N7/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS A5U1N7/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS M8CGV7/169-289 AC M8CGV7 #=GS M8CGV7/169-289 OS Mycobacterium orygis 112400015 #=GS M8CGV7/169-289 DE RNA polymerase sigma factor SigI #=GS M8CGV7/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS M8CGV7/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium orygis; #=GS A0A0H3P2I5/169-289 AC A0A0H3P2I5 #=GS A0A0H3P2I5/169-289 OS Mycobacterium bovis AF2122/97 #=GS A0A0H3P2I5/169-289 DE POSSIBLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGI #=GS A0A0H3P2I5/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS A0A0H3P2I5/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; #=GS A0A0D1NLB4/169-289 AC A0A0D1NLB4 #=GS A0A0D1NLB4/169-289 OS Mycobacterium bovis #=GS A0A0D1NLB4/169-289 DE ECF RNA polymerase sigma factor SigI #=GS A0A0D1NLB4/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS A0A0D1NLB4/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; #=GS F8M5Y6/169-289 AC F8M5Y6 #=GS F8M5Y6/169-289 OS Mycobacterium africanum GM041182 #=GS F8M5Y6/169-289 DE Putative alternative RNA polymerase sigma factor SIGI #=GS F8M5Y6/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS F8M5Y6/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium africanum; #=GS A0A109SM20/169-289 AC A0A109SM20 #=GS A0A109SM20/169-289 OS Mycobacterium microti #=GS A0A109SM20/169-289 DE ECF RNA polymerase sigma factor SigI #=GS A0A109SM20/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS A0A109SM20/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium microti; #=GS A0A045H6Q9/169-289 AC A0A045H6Q9 #=GS A0A045H6Q9/169-289 OS Mycobacterium tuberculosis #=GS A0A045H6Q9/169-289 DE Alternative RNA polymerase sigma factor SIGI #=GS A0A045H6Q9/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS A0A045H6Q9/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS P9WGH2/169-289 AC P9WGH2 #=GS P9WGH2/169-289 OS Mycobacterium tuberculosis CDC1551 #=GS P9WGH2/169-289 DE Probable ECF RNA polymerase sigma factor SigI #=GS P9WGH2/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS P9WGH2/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS A0A0G4DWU5/169-289 AC A0A0G4DWU5 #=GS A0A0G4DWU5/169-289 OS Mycobacterium caprae #=GS A0A0G4DWU5/169-289 DE Probable ECF RNA polymerase sigma factor SigI (EC F sigma factor SigI) (Alternative RNA polymerase sigma fact or SigI) (RNA polymerase sigma-I factor) (Sigma-I factor) #=GS A0A0G4DWU5/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS A0A0G4DWU5/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium caprae; #=GS A0A0K2HUG5/169-289 AC A0A0K2HUG5 #=GS A0A0K2HUG5/169-289 OS Mycobacterium bovis BCG #=GS A0A0K2HUG5/169-289 DE ECF RNA polymerase sigma factor SigI #=GS A0A0K2HUG5/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS A0A0K2HUG5/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; #=GS R4M767/169-289 AC R4M767 #=GS R4M767/169-289 OS Mycobacterium tuberculosis CAS/NITR204 #=GS R4M767/169-289 DE RNA polymerase sigma factor SigI #=GS R4M767/169-289 DR GENE3D; b221ee7ce8b61f008dd46d2c19d1c1ff/169-289; #=GS R4M767/169-289 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS A0A0H3M5G5/173-256 AC A0A0H3M5G5 #=GS A0A0H3M5G5/173-256 OS Mycobacterium bovis BCG str. Pasteur 1173P2 #=GS A0A0H3M5G5/173-256 DE Possible alternative RNA polymerase sigma factor sigI #=GS A0A0H3M5G5/173-256 DR GENE3D; b6d5529a00c8f45e75dafcc8956f0839/173-256; #=GS A0A0H3M5G5/173-256 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; #=GS A0A0U0TL48/2-119 AC A0A0U0TL48 #=GS A0A0U0TL48/2-119 OS Mycobacterium tuberculosis #=GS A0A0U0TL48/2-119 DE Alternative RNA polymerase sigma factor SIGI #=GS A0A0U0TL48/2-119 DR GENE3D; c1a9592c748a1faccf09e130babaa1c3/2-119; #=GS A0A0U0TL48/2-119 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; #=GS A0A0F5N4F1/176-295 AC A0A0F5N4F1 #=GS A0A0F5N4F1/176-295 OS Mycobacterium nebraskense #=GS A0A0F5N4F1/176-295 DE RNA polymerase sigma factor SigI #=GS A0A0F5N4F1/176-295 DR GENE3D; cff7877de1ddfa7a8b9d4196f13d1a1c/176-295; #=GS A0A0F5N4F1/176-295 DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium nebraskense; #=GF TC 159.0 7.9E-51 #=GF SQ 21 Q10083/2-120 ---SQDSESFIRQLFKAFTDFST--DVESLRGFLTPDYRQLVDGRELTLDDFISHAKALRTHLHRLDINVQQIVCQGNKAATVHIAHAIRSSGE-----SSRIKVIAFYSFKDGRISLIDELTY--VLE------GG- O50445/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- P9WGH3/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A1A3QHH0/172-290 --GVEPAEH--QQVTRAFIEACSTGDLGALLGVLDRDASGEIDAR----------SGLVVHGADRVGRN---ILRHWSGPGTVLVAQPVCGQPAVLAFVNRRLAGLLALTIRDDRITKIHVLVRPSTLEPLRAELG-- A0A1A0UAE7/175-292 --LVEPAQH--RAITRAFIEACSTGDLDALMALLDRDVSGELDVR----------SGAVVIGAHQVGIN---ILRYWGRAETVLVAQPVCNQPAILAFVNRRLAGLLALTIEDGKVVKIHVLVRDSTLDPLRAEL--- A0A0T9B527/67-188 AASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A0H3L828/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A5U1N7/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- M8CGV7/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A0H3P2I5/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A0D1NLB4/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- F8M5Y6/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A109SM20/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A045H6Q9/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- P9WGH2/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A0G4DWU5/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A0K2HUG5/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- R4M767/169-289 -ASVEPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A0H3M5G5/173-256 -----PAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALA---------------------------------- A0A0U0TL48/2-119 ----EPAQH--RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR----------KGVVVVGADRVGPT---ILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGG- A0A0F5N4F1/176-295 ---VEPAQH--RLISRAFIEACSTGDLDALMALLDRDVSGEIDAR----------GGVIVVGAHQVGLN---ILRYWGRADTVLVAQPVCGQPAILAFVNRRLAGLLALTIDDRRITKIHVLVRPSALDPLRAELGGA #=GC scorecons 011456666008465799676664597659555966655656969000000000046566566577646000976665566996797676666645555665764444454445564464464333465333333540 #=GC scorecons_70 ______***__*_*_*****_**__***_*___***___*_**_*___________*_*___*_***_____****____***_******_***_____**_**___________*__*__*_____*__________ #=GC scorecons_80 ___________*___***_*_____*___*___*________*_*___________________*_______*________**_***_*_________________________________________________ #=GC scorecons_90 ___________*____**_______*___*___*________*_*___________________________*________**__*____________________________________________________ //