# STOCKHOLM 1.0 #=GF ID 3.10.10.10/FF/3967 #=GF DE Pol polyprotein #=GF AC 3.10.10.10/FF/3967 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 48.736 #=GS P03364/31-102_124-164 AC P03364 #=GS P03364/31-102_124-164 OS Squirrel monkey retrovirus #=GS P03364/31-102_124-164 DE Pol polyprotein #=GS P03364/31-102_124-164 DR GENE3D; 44dec01cfb74c21599a65af5b824d626/31-102_124-164; #=GS P03364/31-102_124-164 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Squirrel monkey retrovirus; #=GS P03364/31-102_124-164 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P51517/34-105_127-167 AC P51517 #=GS P51517/34-105_127-167 OS Simian retrovirus 2 #=GS P51517/34-105_127-167 DE Pol polyprotein #=GS P51517/34-105_127-167 DR GENE3D; 120f683c2c0c80ac8ccf29ab1cb598a3/34-105_127-167; #=GS P51517/34-105_127-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS P51517/34-105_127-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P04025/34-105_127-167 AC P04025 #=GS P04025/34-105_127-167 OS Simian retrovirus 1 #=GS P04025/34-105_127-167 DE Pol polyprotein #=GS P04025/34-105_127-167 DR GENE3D; b7157438de63f2565de7030b9897d83f/34-105_127-167; #=GS P04025/34-105_127-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS P04025/34-105_127-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P03365/28-99_121-161 AC P03365 #=GS P03365/28-99_121-161 OS Mouse mammary tumor virus (STRAIN BR6) #=GS P03365/28-99_121-161 DE Pol polyprotein #=GS P03365/28-99_121-161 DR GENE3D; 3eb5c2d429953c9ff9005a180b98a54b/28-99_121-161; #=GS P03365/28-99_121-161 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; #=GS P03365/28-99_121-161 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P07572/34-105_127-167 AC P07572 #=GS P07572/34-105_127-167 OS Mason-Pfizer monkey virus #=GS P07572/34-105_127-167 DE Pol polyprotein #=GS P07572/34-105_127-167 DR GENE3D; 4a3b79645d943eaf581b91239350e3cd/34-105_127-167; #=GS P07572/34-105_127-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS P07572/34-105_127-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P11283/884-955_977-1017 AC P11283 #=GS P11283/884-955_977-1017 OS Mouse mammary tumor virus (STRAIN C3H) #=GS P11283/884-955_977-1017 DE Gag-Pro-Pol polyprotein #=GS P11283/884-955_977-1017 DR GENE3D; daf704eb0863addf82435aa5fe3703c9/884-955_977-1017; #=GS P11283/884-955_977-1017 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; #=GS P11283/884-955_977-1017 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS E0WCK8/33-104_126-166 AC E0WCK8 #=GS E0WCK8/33-104_126-166 OS Simian retrovirus 4 #=GS E0WCK8/33-104_126-166 DE Pol protein #=GS E0WCK8/33-104_126-166 DR GENE3D; 2f0ed00e18fd9c93a8c1dbbbe1974acc/33-104_126-166; #=GS E0WCK8/33-104_126-166 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Simian retrovirus 4; #=GS O41290/33-104_126-166 AC O41290 #=GS O41290/33-104_126-166 OS Simian endogenous retrovirus #=GS O41290/33-104_126-166 DE Polymerase #=GS O41290/33-104_126-166 DR GENE3D; f9fd36418943e58a13f1f2bcb1f347d5/33-104_126-166; #=GS O41290/33-104_126-166 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS O56224/938-1009_1031-1071 AC O56224 #=GS O56224/938-1009_1031-1071 OS Mason-Pfizer monkey virus #=GS O56224/938-1009_1031-1071 DE RT-IN #=GS O56224/938-1009_1031-1071 DR GENE3D; aa4cbdb76b87146c9ea418c97bc6f821/938-1009_1031-1071; #=GS O56224/938-1009_1031-1071 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS Q7SPW3/24-95_117-157 AC Q7SPW3 #=GS Q7SPW3/24-95_117-157 OS Human betaretrovirus #=GS Q7SPW3/24-95_117-157 DE Pol #=GS Q7SPW3/24-95_117-157 DR GENE3D; 527218ecbd7d669eb25376969c523e20/24-95_117-157; #=GS Q7SPW3/24-95_117-157 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; #=GS D7RWC2/32-108_134-169 AC D7RWC2 #=GS D7RWC2/32-108_134-169 OS Simian retrovirus 1 #=GS D7RWC2/32-108_134-169 DE Pol protein #=GS D7RWC2/32-108_134-169 DR GENE3D; ebc02189c1ecd61c967af91bec2ad8aa/32-108_134-169; #=GS D7RWC2/32-108_134-169 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS Q9HBF9/24-95_117-157 AC Q9HBF9 #=GS Q9HBF9/24-95_117-157 OS Human mammary tumor virus #=GS Q9HBF9/24-95_117-157 DE Gag-pro-pol protein #=GS Q9HBF9/24-95_117-157 DR GENE3D; fd6909172f78fae1920670815804a694/24-95_117-157; #=GS Q9HBF9/24-95_117-157 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Human mammary tumor virus; #=GS L0N080/34-105_127-167 AC L0N080 #=GS L0N080/34-105_127-167 OS Simian retrovirus Y #=GS L0N080/34-105_127-167 DE Pol protein #=GS L0N080/34-105_127-167 DR GENE3D; 3e31939229704d60245ce4b2042c8d57/34-105_127-167; #=GS L0N080/34-105_127-167 DR ORG; Viruses; Retroviridae; Simian retrovirus Y; #=GF TC 215.8 6.2E-68 #=GF SQ 13 P03364/31-102_124-164 -VDQWPLTYEKTLAAIALVQEQLAAGHIEPTNSPWNTPIFIIKKKSGSWRLLQDLRAVNKVMVPMGALQPGLPTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSP--- P51517/34-105_127-167 -VDQWPLTQEKLAAAQQLVQEQLQAGHIIESNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPTIPLQPVDQKRFAFSLPSTNFKQPMKRYQWKVLPQGMANSP--- P04025/34-105_127-167 -VDQWPLTSEKLAAAQQLVQEQLEAGHITESNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQRMANSP--- P03365/28-99_121-161 -LNQWPLKQEKLQALQQLVTEQLQLGHLEESNSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSP--- P07572/34-105_127-167 -VDQWPLTNDKLAAAQQLVQEQLEAGHITESSSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQGMANSP--- P11283/884-955_977-1017 -LNQWPLKQEKLQALQQLVTEQLQLGHLEESNSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSP--- E0WCK8/33-104_126-166 -VDQWPLTKEKLTAAQQLVQEQLQAGHIVESNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMILMGALQPGLPTIPLHPNDQKRFAFSLPSTNFKEPMKRYQWKVLPQGMANSP--- O41290/33-104_126-166 -VDQWPLLNDKLSAAQQLLQEQLEAGHIIESNSPWNTPIFVIKKKSGKWRLLQDLRAVNITMVLMGALQPGLPTIPLHPADQKRFAFSLPSTNFRQPMKRYQWKVLPQGMANSP--- O56224/938-1009_1031-1071 -VDQWPLTNDKLAAAQQLVQEQLEAGHITESSSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQGMANSP--- Q7SPW3/24-95_117-157 -LNQWPLKQEKLQALRQLVTEQLQLGHLEESNSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSP--- D7RWC2/32-108_134-169 WVDQWPLLNDKLSAAQQLVQEQLIAGHITESNSPWNTPIFVIKKKSGKWRLLKDLRAINITMVLMGALQPGLPS----PVAQKRFAFSLPSTNFKQLMKRYQWKVLPQGMANSPTLC Q9HBF9/24-95_117-157 -LNQWPLKQEKLQALQQLVTEQLQLGHLEESNSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSP--- L0N080/34-105_127-167 -VDQWPLTYEKLIAAQQLVQEQLEAGHIVESNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPTIPLHPDDQKRFAFSLPSINFKEPMKRYQWRVLPQGMANSP--- #=GC scorecons 066999944797395679859994599647779999997989999997999979999895794499999999956466947477999969759974755979989999895999000 #=GC scorecons_70 _******__***_*_****_***__***_******************************_**__*********_*_***_*_*********_***_*__***********_***___ #=GC scorecons_80 ___****__***_*__***_***__**__******************************_**__*********_____*_*_******_**_***_*__***********_***___ #=GC scorecons_90 ___****___*__*___**_***__**_____******_********_****_******__*__*********_____*_____****_*__**_____*_*********_***___ //