# STOCKHOLM 1.0 #=GF ID 3.10.10.10/FF/3966 #=GF DE Gag and reverse transcriptase polyprotein #=GF AC 3.10.10.10/FF/3966 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 49.925 #=GS Q04095/729-800_822-862 AC Q04095 #=GS Q04095/729-800_822-862 OS Rous sarcoma virus (strain Schmidt-Ruppin A) #=GS Q04095/729-800_822-862 DE Gag-Pro-Pol polyprotein #=GS Q04095/729-800_822-862 DR GENE3D; 08a95ff0af5ea705e30d3c3ea0f0b939/729-800_822-862; #=GS Q04095/729-800_822-862 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS Q04095/729-800_822-862 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS O39643/21-92_114-154 AC O39643 #=GS O39643/21-92_114-154 OS Rous-associated virus type 2 #=GS O39643/21-92_114-154 DE Reverse transcriptase #=GS O39643/21-92_114-154 DR GENE3D; 25a35b3fe75e46d9d5c4a95e39f1ee67/21-92_114-154; #=GS O39643/21-92_114-154 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS O39643/21-92_114-154 DR EC; 2.7.7.49; #=GS P11368/31-102_124-164 AC P11368 #=GS P11368/31-102_124-164 OS Mouse intracisternal A-particle MIA14 #=GS P11368/31-102_124-164 DE Putative Pol polyprotein #=GS P11368/31-102_124-164 DR GENE3D; c9590f9568832f10f873a4112f5b53c1/31-102_124-164; #=GS P11368/31-102_124-164 DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Mouse Intracisternal A-particle; #=GS P11368/31-102_124-164 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P04026/20-91_113-153 AC P04026 #=GS P04026/20-91_113-153 OS Golden hamster intracisternal A-particle H18 #=GS P04026/20-91_113-153 DE Putative Pol polyprotein #=GS P04026/20-91_113-153 DR GENE3D; 0091df83cbba4f7c4be17a9221cc318d/20-91_113-153; #=GS P04026/20-91_113-153 DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Golden hamster intracisternal A-particle H18; #=GS P04026/20-91_113-153 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P03354/729-800_822-862 AC P03354 #=GS P03354/729-800_822-862 OS Rous sarcoma virus - Prague C #=GS P03354/729-800_822-862 DE Gag-Pro-Pol polyprotein #=GS P03354/729-800_822-862 DR GENE3D; f36623226a6306d750289dede37689a2/729-800_822-862; #=GS P03354/729-800_822-862 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS P03354/729-800_822-862 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS O92956/729-800_822-862 AC O92956 #=GS O92956/729-800_822-862 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS O92956/729-800_822-862 DE Gag-Pro-Pol polyprotein #=GS O92956/729-800_822-862 DR GENE3D; 37e0dffd15fdd823a62a7ad9972c557f/729-800_822-862; #=GS O92956/729-800_822-862 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS O92956/729-800_822-862 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q7SQ98/21-92_114-154 AC Q7SQ98 #=GS Q7SQ98/21-92_114-154 OS Avian leukosis virus #=GS Q7SQ98/21-92_114-154 DE Pol polyprotein #=GS Q7SQ98/21-92_114-154 DR GENE3D; 474e106fec8ea474a5d1f8b4a57cb3c1/21-92_114-154; #=GS Q7SQ98/21-92_114-154 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS Q7SQ98/21-92_114-154 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS B8X346/21-92_114-154 AC B8X346 #=GS B8X346/21-92_114-154 OS Rous sarcoma virus #=GS B8X346/21-92_114-154 DE Reverse transcriptase #=GS B8X346/21-92_114-154 DR GENE3D; 916536de741db2d16de21df9fbe79b60/21-92_114-154; #=GS B8X346/21-92_114-154 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS B8X346/21-92_114-154 DR EC; 2.7.7.49; #=GS Q330L6/8-79_101-141 AC Q330L6 #=GS Q330L6/8-79_101-141 OS Falco peregrinus #=GS Q330L6/8-79_101-141 DE Reverse transcriptase #=GS Q330L6/8-79_101-141 DR GENE3D; e192268372f8d0660665c153c56feec2/8-79_101-141; #=GS Q330L6/8-79_101-141 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Aves; Neognathae; Falconiformes; Falconidae; Falco; Falco peregrinus; #=GS Q6A2B3/27-98_120-160 AC Q6A2B3 #=GS Q6A2B3/27-98_120-160 OS Avian endogenous retrovirus EAV-HP #=GS Q6A2B3/27-98_120-160 DE Reverse transcriptase/integrase #=GS Q6A2B3/27-98_120-160 DR GENE3D; d75b6b34bddbb983aa209eb5640a6485/27-98_120-160; #=GS Q6A2B3/27-98_120-160 DR ORG; Viruses; Retroviridae; Avian endogenous retrovirus EAV-HP; #=GF TC 212.9 3.7E-67 #=GF SQ 10 Q04095/729-800_822-862 IDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSP O39643/21-92_114-154 IDQWPLPEGKLVAVTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSP P11368/31-102_124-164 VPQWHLSSEKLEAVIQLVEEQLKLGHIDPSTSPWNTPIFVIKKKSGKWRLLHDLRPINEQMNLFGPVQRGLPSIPLCPRDRPRFAFTIPSINSDEPDNRYQWKVLPQGMSNSP P04026/20-91_113-153 VSQWPLSSEKLEAVTRLVQEQERLGHLEPSTSPWNTPIFVIKKKSGKWRLLHDLRAINNQMHLFGPVQRGLPSIPLYPRDRPRFAFTIPSLNHMEPDKRFQWKVLPQGMANSP P03354/729-800_822-862 IDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSP O92956/729-800_822-862 IDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSP Q7SQ98/21-92_114-154 IDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSP B8X346/21-92_114-154 IDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSP Q330L6/8-79_101-141 IDQWPLPEIKLVALIHLVERELQLGHLEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLIPFGAVQQGAPSIPLAGQDREAFAFTLPSVNNQAPARRFQWKVLPQGMACSP Q6A2B3/27-98_120-160 VDQWPLPKEKLDALQTLVARELRLGHIEPSLSRWNTPVFVIQKKSGAFRLLHDLRAVNSQLIPFGVVQQGAPSIPLAEQDREAFAFTVPVSNNQRPTQRYQWRVLPQGMACSP #=GC scorecons 64996964599496559955655999679959499997999695994599999997794663599599695999994469955999959749544945979989999995599 #=GC scorecons_70 *_****___**_*___**__*__*******_*_********_*_**__**********__*__**_****_*****__***__****_**_*___*__***********__** #=GC scorecons_80 __**_*___**_*___**_____***_***_*_****_***_*_**__*******__*_____**_**_*_*****___**__****_*__*___*__***********__** #=GC scorecons_90 __**_*___**_*___**_____***__**_*_****_***_*_**__*******__*_____**_**_*_*****___**__****_*__*___*__*_**_******__** //