# STOCKHOLM 1.0
#=GF ID 3.10.10.10/FF/3956
#=GF DE Gag-Pro-Pol polyprotein
#=GF AC 3.10.10.10/FF/3956
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 35.811
#=GS P03363/590-662_685-725  AC P03363
#=GS P03363/590-662_685-725  OS Human T-lymphotropic virus 2
#=GS P03363/590-662_685-725  DE Gag-Pro-Pol polyprotein
#=GS P03363/590-662_685-725  DR GENE3D; dd7420c7ae2a459672164cf5b55516a4/590-662_685-725; 
#=GS P03363/590-662_685-725  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 2; 
#=GS P03363/590-662_685-725  DR GO; GO:0005515; 
#=GS P03363/590-662_685-725  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P03362/593-664_687-727  AC P03362
#=GS P03362/593-664_687-727  OS Human T-cell lymphotrophic virus type 1 (strain ATK)
#=GS P03362/593-664_687-727  DE Gag-Pro-Pol polyprotein
#=GS P03362/593-664_687-727  DR GENE3D; e99dc1518b9af5c01c1243a5b3f3b4bc/593-664_687-727; 
#=GS P03362/593-664_687-727  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS P03362/593-664_687-727  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q4U0X6/572-643_666-706  AC Q4U0X6
#=GS Q4U0X6/572-643_666-706  OS Human T-cell leukemia virus 3 (strain Pyl43)
#=GS Q4U0X6/572-643_666-706  DE Gag-Pro-Pol polyprotein
#=GS Q4U0X6/572-643_666-706  DR GENE3D; f9e70d43da42afe06aed9091ce37a79a/572-643_666-706; 
#=GS Q4U0X6/572-643_666-706  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; 
#=GS Q4U0X6/572-643_666-706  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P14078/593-664_687-727  AC P14078
#=GS P14078/593-664_687-727  OS Human T-cell lymphotrophic virus type 1 (Caribbean isolate)
#=GS P14078/593-664_687-727  DE Gag-Pro-Pol polyprotein
#=GS P14078/593-664_687-727  DR GENE3D; 094456b764f7d51f65afd6baae8dc0ee/593-664_687-727; 
#=GS P14078/593-664_687-727  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS P14078/593-664_687-727  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P0C211/593-664_687-727  AC P0C211
#=GS P0C211/593-664_687-727  OS HTLV-1 isolate Mel 15
#=GS P0C211/593-664_687-727  DE Gag-Pro-Pol polyprotein
#=GS P0C211/593-664_687-727  DR GENE3D; d2a6179b80f6e80858f6f4a29cec4036/593-664_687-727; 
#=GS P0C211/593-664_687-727  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS P0C211/593-664_687-727  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q0R5R2/572-643_666-706  AC Q0R5R2
#=GS Q0R5R2/572-643_666-706  OS HTLV-3 strain 2026ND
#=GS Q0R5R2/572-643_666-706  DE Gag-Pro-Pol polyprotein
#=GS Q0R5R2/572-643_666-706  DR GENE3D; 5a1d5796697a4fab0b2d8e53531b065b/572-643_666-706; 
#=GS Q0R5R2/572-643_666-706  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; 
#=GS Q0R5R2/572-643_666-706  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS E5RCL4/85-151_174-214   AC E5RCL4
#=GS E5RCL4/85-151_174-214   OS Human T-lymphotropic virus 2
#=GS E5RCL4/85-151_174-214   DE Pol protein
#=GS E5RCL4/85-151_174-214   DR GENE3D; 701035e7f0e21bbf80fb5099f504076c/85-151_174-214; 
#=GS E5RCL4/85-151_174-214   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 2; 
#=GS O56622/30-98_121-161    AC O56622
#=GS O56622/30-98_121-161    OS Human T-lymphotropic virus 1
#=GS O56622/30-98_121-161    DE Polymerase
#=GS O56622/30-98_121-161    DR GENE3D; b651ae2a6da46c7991689ea833edab7a/30-98_121-161; 
#=GS O56622/30-98_121-161    DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS Q4QY51/32-98_121-161    AC Q4QY51
#=GS Q4QY51/32-98_121-161    OS Simian T-lymphotropic virus 1
#=GS Q4QY51/32-98_121-161    DE Pol protein
#=GS Q4QY51/32-98_121-161    DR GENE3D; 5238b823574e35e61877e39c34fbbd73/32-98_121-161; 
#=GS Q4QY51/32-98_121-161    DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS O09242/123-194_217-257  AC O09242
#=GS O09242/123-194_217-257  OS Simian T-lymphotropic virus 2
#=GS O09242/123-194_217-257  DE Pol protein
#=GS O09242/123-194_217-257  DR GENE3D; 9a08e78529559c17fc2f35de7d300ac7/123-194_217-257; 
#=GS O09242/123-194_217-257  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 2; 
#=GS O70641/598-669_692-732  AC O70641
#=GS O70641/598-669_692-732  OS Simian T-lymphotropic virus 2
#=GS O70641/598-669_692-732  DE Gag-pro-pol polyprotein
#=GS O70641/598-669_692-732  DR GENE3D; b90bfad8c07d1507a61c21367ae4d2c2/598-669_692-732; 
#=GS O70641/598-669_692-732  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 2; 
#=GS Q8URT1/29-96_119-159    AC Q8URT1
#=GS Q8URT1/29-96_119-159    OS Simian T-lymphotropic virus 3
#=GS Q8URT1/29-96_119-159    DE Polymerase
#=GS Q8URT1/29-96_119-159    DR GENE3D; 65bdbede75217c9f4de5fdb8dcb26119/29-96_119-159; 
#=GS Q8URT1/29-96_119-159    DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; 
#=GS D2E921/17-84_107-147    AC D2E921
#=GS D2E921/17-84_107-147    OS Simian T-lymphotropic virus 3
#=GS D2E921/17-84_107-147    DE Pol protein
#=GS D2E921/17-84_107-147    DR GENE3D; 2ed9d20b287ffe0ebce7fed88a765f26/17-84_107-147; 
#=GS D2E921/17-84_107-147    DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 3; 
#=GS A2I4Z5/29-100_123-163   AC A2I4Z5
#=GS A2I4Z5/29-100_123-163   OS Human T-lymphotropic virus 1
#=GS A2I4Z5/29-100_123-163   DE Gag-pro-pol polyprotein
#=GS A2I4Z5/29-100_123-163   DR GENE3D; 0e8fa5fd60179ef7f7270b4ba5859f0d/29-100_123-163; 
#=GS A2I4Z5/29-100_123-163   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS A2I4X9/29-100_123-163   AC A2I4X9
#=GS A2I4X9/29-100_123-163   OS Human T-lymphotropic virus 1
#=GS A2I4X9/29-100_123-163   DE Gag-pro-pol polyprotein
#=GS A2I4X9/29-100_123-163   DR GENE3D; 1d6f5ea17a481f39ae25d849c3c1971c/29-100_123-163; 
#=GS A2I4X9/29-100_123-163   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS B8LHM0/42-108_131-171   AC B8LHM0
#=GS B8LHM0/42-108_131-171   OS Human T-lymphotropic virus 4
#=GS B8LHM0/42-108_131-171   DE Polymerase
#=GS B8LHM0/42-108_131-171   DR GENE3D; 39011cba536af8fa1766089b96070403/42-108_131-171; 
#=GS B8LHM0/42-108_131-171   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Human T-lymphotropic virus 4; 
#=GF TC 226.5 4.5E-71
#=GF SQ 16
P03363/590-662_685-725          VDQFPLNLPERLQALNDLVSKALEAGHIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLTSPSPGPPQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSP
P03362/593-664_687-727          ISQFPLN-PERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSP
Q4U0X6/572-643_666-706          VSQFPLN-PERLQALTDLVSRALEAKHIEPYQGPGNNPIFPVKKPNGKWRFIHDLRATNSLTRDLASPSPGPPQIPLPAVFQPYFAFTLPQPNNHGPGTRYSWRVLPQGFKNSP
P14078/593-664_687-727          ISQFPLN-PERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSP
P0C211/593-664_687-727          ISQFPLN-PERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTVDLSSSSPGPPQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSP
Q0R5R2/572-643_666-706          VSQFPLN-PERLQALTDLVSRALEAKHIEPYQGPGNNPIFPVKKPNGKWRFIHDLRATNSVTRDLASPSPGPPQIPLPTIFQPYFAFTLPQPNNYGPGTRYSWRVLPQGFKNSP
E5RCL4/85-151_174-214           -----FK-PERLQALNDLVSKALEAGHIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLTSPSPGPPQIPLPKQFQPYFAFTIPQSCNCGPGTRYAWTVLPQGFKNSP
O56622/30-98_121-161            ---VPFK-PERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSP
Q4QY51/32-98_121-161            -----FK-PERLQALQHLVHRALEANHIEPYFGPGNNPVFPVKKSSGAWRFIHDLRATNSLTTDLASSSPGPPQIPLPKKFQPYFAFTVPQQCNYGPGNRYAWKVLPQGFKNSP
O09242/123-194_217-257          IDQFPFK-PERLQALTDLVSKALEASYIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLASPSPGPPQIPLPKQFQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSP
O70641/598-669_692-732          IDQFPFK-PERLQALTDLVSKALEASYIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLASPSPGPPQIPLPKQFQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSP
Q8URT1/29-96_119-159            ----PVK-PERLQALTDLVSRALEAKHIEPYQGPGNNPIFPVKKPNGKWRFIHDLRATNSLTRDLASPSPGPPQIPLPAVFQPYFAFTLPQPNNHGPGTRYSWRVLPQGFKNSP
D2E921/17-84_107-147            ----SVK-PERLQALTDLVSKALEAKYIEPYQGPGNNPIFPVKKPNGKWRFIHDLRATNCLTKTLTSPSPGPPQIPLPVAFQPYFAFTLPQPNNHGPGARYSWKVLPQGFKNSP
A2I4Z5/29-100_123-163           ISQFPLN-PERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSP
A2I4X9/29-100_123-163           ISQFPLN-PERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSP
B8LHM0/42-108_131-171           -----FK-PERLQALIDLVSKALEAGHIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLASPSPGPPQIPLPKRFQPYFAFTIPQPLNHGPGSRYAWTVLPQGFKNSP
#=GC scorecons                  212345609999999459957999947999949999997999995895999999999995694595969999999999548999999959955969996996959999999999
#=GC scorecons_70               ________*******__**_*****_*****_************_**_***********_**__*_*_**********__********_**__*****_****_**********
#=GC scorecons_80               ________*******__**_*****_*****_************_**_***********__*__*_*_**********__********_**__*_***_**_*_**********
#=GC scorecons_90               ________*******__**__****__****_******_*****_**_***********__*__*_*_**********__********_**__*_***_**_*_**********
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