# STOCKHOLM 1.0 #=GF ID 3.10.10.10/FF/3954 #=GF DE Putative gag-pro-pol polyprotein #=GF AC 3.10.10.10/FF/3954 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 47.255 #=GS P03355/706-781_818-851 AC P03355 #=GS P03355/706-781_818-851 OS Moloney murine leukemia virus isolate Shinnick #=GS P03355/706-781_818-851 DE Gag-Pol polyprotein #=GS P03355/706-781_818-851 DR GENE3D; cdd2d55e61fe9a7826e4886b5b37a9e0/706-781_818-851; #=GS P03355/706-781_818-851 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P03355/706-781_818-851 DR GO; GO:0003677; GO:0006308; GO:0032993; GO:0044824; GO:0044826; #=GS P03355/706-781_818-851 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P26809/172-247_284-317 AC P26809 #=GS P26809/172-247_284-317 OS Friend murine leukemia virus (ISOLATE FB29) #=GS P26809/172-247_284-317 DE Pol polyprotein #=GS P26809/172-247_284-317 DR GENE3D; 6227a546b713bde85071673604a22402/172-247_284-317; #=GS P26809/172-247_284-317 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P26809/172-247_284-317 DR EC; 2.7.7.49; 3.1.26.4; #=GS A1Z651/704-779_816-849 AC A1Z651 #=GS A1Z651/704-779_816-849 OS Xenotropic MuLV-related virus VP62 #=GS A1Z651/704-779_816-849 DE Gag-Pol polyprotein #=GS A1Z651/704-779_816-849 DR GENE3D; 45c08060ec0e7043ac74a9b9dee643e2/704-779_816-849; #=GS A1Z651/704-779_816-849 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS A1Z651/704-779_816-849 DR GO; GO:0042802; #=GS A1Z651/704-779_816-849 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q2F7J0/704-779_816-849 AC Q2F7J0 #=GS Q2F7J0/704-779_816-849 OS Xenotropic MuLV-related virus VP42 #=GS Q2F7J0/704-779_816-849 DE Gag-Pol polyprotein #=GS Q2F7J0/704-779_816-849 DR GENE3D; 3ed901e5ee8f2e8a4455046b8e2c785c/704-779_816-849; #=GS Q2F7J0/704-779_816-849 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS Q2F7J0/704-779_816-849 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q2F7J3/704-779_816-849 AC Q2F7J3 #=GS Q2F7J3/704-779_816-849 OS Xenotropic MuLV-related virus VP35 #=GS Q2F7J3/704-779_816-849 DE Gag-Pol polyprotein #=GS Q2F7J3/704-779_816-849 DR GENE3D; 5e067199ac8630b8038fa788b87c3c24/704-779_816-849; #=GS Q2F7J3/704-779_816-849 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS Q2F7J3/704-779_816-849 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS D0UFA3/704-779_816-849 AC D0UFA3 #=GS D0UFA3/704-779_816-849 OS XMRV #=GS D0UFA3/704-779_816-849 DE Putative gag-pro-pol polyprotein #=GS D0UFA3/704-779_816-849 DR GENE3D; 45c08060ec0e7043ac74a9b9dee643e2/704-779_816-849; #=GS D0UFA3/704-779_816-849 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS D0UFA3/704-779_816-849 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P31792/22-97_134-167 AC P31792 #=GS P31792/22-97_134-167 OS Feline endogenous virus ECE1 #=GS P31792/22-97_134-167 DE Pol polyprotein #=GS P31792/22-97_134-167 DR GENE3D; f0f480c7d749529f282db6878ad8fb92/22-97_134-167; #=GS P31792/22-97_134-167 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Feline endogenous virus; #=GS P31792/22-97_134-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q9TTC1/126-201_238-271 AC Q9TTC1 #=GS Q9TTC1/126-201_238-271 OS Koala retrovirus #=GS Q9TTC1/126-201_238-271 DE Pro-Pol polyprotein #=GS Q9TTC1/126-201_238-271 DR GENE3D; 484fb120a0ae1da2af51a76d9c61f67c/126-201_238-271; #=GS Q9TTC1/126-201_238-271 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Koala retrovirus; #=GS Q9TTC1/126-201_238-271 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P10272/165-240_277-310 AC P10272 #=GS P10272/165-240_277-310 OS Baboon endogenous virus strain M7 #=GS P10272/165-240_277-310 DE Pol polyprotein #=GS P10272/165-240_277-310 DR GENE3D; bb76e8b0baa158e116f7799ff9435d6d/165-240_277-310; #=GS P10272/165-240_277-310 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Baboon endogenous virus; #=GS P10272/165-240_277-310 DR EC; 2.7.7.49; 3.1.26.4; #=GS P26810/172-247_284-317 AC P26810 #=GS P26810/172-247_284-317 OS Friend murine leukemia virus (ISOLATE 57) #=GS P26810/172-247_284-317 DE Pol polyprotein #=GS P26810/172-247_284-317 DR GENE3D; 520230f77e10d941a2c96dedffd8161b/172-247_284-317; #=GS P26810/172-247_284-317 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P26810/172-247_284-317 DR EC; 2.7.7.49; 3.1.26.4; #=GS P03356/167-242_279-312 AC P03356 #=GS P03356/167-242_279-312 OS AKR (endogenous) murine leukemia virus #=GS P03356/167-242_279-312 DE Pol polyprotein #=GS P03356/167-242_279-312 DR GENE3D; 3dc487a6786836825010f16dfc4fe992/167-242_279-312; #=GS P03356/167-242_279-312 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P03356/167-242_279-312 DR EC; 2.7.7.49; 3.1.26.4; #=GS P21414/164-239_276-309 AC P21414 #=GS P21414/164-239_276-309 OS Gibbon ape leukemia virus #=GS P21414/164-239_276-309 DE Pol polyprotein #=GS P21414/164-239_276-309 DR GENE3D; e174aad4053fa2a4044fc93f70b1f119/164-239_276-309; #=GS P21414/164-239_276-309 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Gibbon ape leukemia virus; #=GS P21414/164-239_276-309 DR EC; 2.7.7.49; 3.1.26.4; #=GS P26808/172-247_284-317 AC P26808 #=GS P26808/172-247_284-317 OS Friend murine leukemia virus (ISOLATE PVC-211) #=GS P26808/172-247_284-317 DE Pol polyprotein #=GS P26808/172-247_284-317 DR GENE3D; d9237be3982e93737f97aba31c73e3d7/172-247_284-317; #=GS P26808/172-247_284-317 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P26808/172-247_284-317 DR EC; 2.7.7.49; 3.1.26.4; #=GS S4X2Q9/164-239_276-309 AC S4X2Q9 #=GS S4X2Q9/164-239_276-309 OS Mus caroli #=GS S4X2Q9/164-239_276-309 DE Pol protein #=GS S4X2Q9/164-239_276-309 DR GENE3D; 748aaf7e7cbcc80264202f6f5fcf5769/164-239_276-309; #=GS S4X2Q9/164-239_276-309 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus caroli; #=GS M3X186/197-272_309-342 AC M3X186 #=GS M3X186/197-272_309-342 OS Felis catus #=GS M3X186/197-272_309-342 DE Uncharacterized protein #=GS M3X186/197-272_309-342 DR GENE3D; 70c3c32e89be9bf5a2cf9c0f0d3e5fa6/197-272_309-342; #=GS M3X186/197-272_309-342 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis; Felis catus; #=GS Q8UN00/706-781_818-851 AC Q8UN00 #=GS Q8UN00/706-781_818-851 OS Moloney murine leukemia virus #=GS Q8UN00/706-781_818-851 DE Pr180 Gag-Pro-Pol polyprotein #=GS Q8UN00/706-781_818-851 DR GENE3D; d057d87c37ff6bcbbcb11fc5f104ada6/706-781_818-851; #=GS Q8UN00/706-781_818-851 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q8UN00/706-781_818-851 DR GO; GO:0005515; #=GS Q9E7M1/704-779_816-849 AC Q9E7M1 #=GS Q9E7M1/704-779_816-849 OS DG-75 Murine leukemia virus #=GS Q9E7M1/704-779_816-849 DE Putative gag-pro-pol polyprotein #=GS Q9E7M1/704-779_816-849 DR GENE3D; 7108f26182c8fe028e15a22e1081edb7/704-779_816-849; #=GS Q9E7M1/704-779_816-849 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS K7ZK66/686-761_798-831 AC K7ZK66 #=GS K7ZK66/686-761_798-831 OS Koala retrovirus #=GS K7ZK66/686-761_798-831 DE Gag-pol polyprotein #=GS K7ZK66/686-761_798-831 DR GENE3D; 2b00606e0d384eab995e2c480a82fab2/686-761_798-831; #=GS K7ZK66/686-761_798-831 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Koala retrovirus; #=GS Q7ZKZ7/168-243_280-313 AC Q7ZKZ7 #=GS Q7ZKZ7/168-243_280-313 OS Recombinant M-MuLV/RaLV retrovirus #=GS Q7ZKZ7/168-243_280-313 DE Pol protein #=GS Q7ZKZ7/168-243_280-313 DR GENE3D; 5aebc05162561e2f78a31e0a8a10e612/168-243_280-313; #=GS Q7ZKZ7/168-243_280-313 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Recombinant M-MuLV/RaLV retrovirus; #=GS O89811/747-822_859-892 AC O89811 #=GS O89811/747-822_859-892 OS Feline leukemia virus #=GS O89811/747-822_859-892 DE Gag-pol polyprotein gPr80 #=GS O89811/747-822_859-892 DR GENE3D; 5a97ed43a4f916de14c3a4608a95377e/747-822_859-892; #=GS O89811/747-822_859-892 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Feline leukemia virus; #=GS Q83371/396-471_508-541 AC Q83371 #=GS Q83371/396-471_508-541 OS Moloney murine leukemia virus #=GS Q83371/396-471_508-541 DE Reverse transcriptase #=GS Q83371/396-471_508-541 DR GENE3D; 57f8e93404549c7944fb711b0c79bb77/396-471_508-541; #=GS Q83371/396-471_508-541 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS O89815/164-239_276-309 AC O89815 #=GS O89815/164-239_276-309 OS Mus dunni endogenous virus #=GS O89815/164-239_276-309 DE Pol polyprotein #=GS O89815/164-239_276-309 DR GENE3D; 7706ce329dac928aec54df34272ec5a8/164-239_276-309; #=GS O89815/164-239_276-309 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS A0A096XUE1/72-147_184-217 AC A0A096XUE1 #=GS A0A096XUE1/72-147_184-217 OS Melomys burtoni retrovirus #=GS A0A096XUE1/72-147_184-217 DE Polymerase #=GS A0A096XUE1/72-147_184-217 DR GENE3D; 17c0fbeb1b43eae9f7becb71c3b300cd/72-147_184-217; #=GS A0A096XUE1/72-147_184-217 DR ORG; Viruses; Retroviridae; Melomys burtoni retrovirus; #=GS K0IXD4/26-101_138-171 AC K0IXD4 #=GS K0IXD4/26-101_138-171 OS Feline leukemia virus #=GS K0IXD4/26-101_138-171 DE Pol polyprotein #=GS K0IXD4/26-101_138-171 DR GENE3D; afbac9281d7163827fbc96f9506c6f43/26-101_138-171; #=GS K0IXD4/26-101_138-171 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Feline leukemia virus; #=GS Q7ZL04/168-243_280-313 AC Q7ZL04 #=GS Q7ZL04/168-243_280-313 OS Recombinant M-MuLV/RaLV retrovirus #=GS Q7ZL04/168-243_280-313 DE Pol protein #=GS Q7ZL04/168-243_280-313 DR GENE3D; b3a03cba6bb85addf7503680385ad4a7/168-243_280-313; #=GS Q7ZL04/168-243_280-313 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Recombinant M-MuLV/RaLV retrovirus; #=GS A0A074LLR4/68-143_180-213 AC A0A074LLR4 #=GS A0A074LLR4/68-143_180-213 OS Tumebacillus flagellatus #=GS A0A074LLR4/68-143_180-213 DE Uncharacterized protein #=GS A0A074LLR4/68-143_180-213 DR GENE3D; 95009a360db44c1e17b2b18d6fa094f8/68-143_180-213; #=GS A0A074LLR4/68-143_180-213 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus; Tumebacillus flagellatus; #=GS A7LKA6/716-791_828-861 AC A7LKA6 #=GS A7LKA6/716-791_828-861 OS RD114 retrovirus #=GS A7LKA6/716-791_828-861 DE Gag-pol polyprotein #=GS A7LKA6/716-791_828-861 DR GENE3D; 5a9f682ac27f9043a4b822f819cdf86e/716-791_828-861; #=GS A7LKA6/716-791_828-861 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Gammaretrovirus; RD114 retrovirus; #=GF TC 217.6 3.7E-68 #=GF SQ 27 P03355/706-781_818-851 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF P26809/172-247_284-317 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQSLFAFEWRDPEMGISGQLTWTRLPQGF A1Z651/704-779_816-849 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF Q2F7J0/704-779_816-849 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF Q2F7J3/704-779_816-849 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF D0UFA3/704-779_816-849 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF P31792/22-97_134-167 PIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPWNTPLLPVKKPGTRDYRPVQDLREVNKRTPLAPQSQELFAFEWRDPERGISGQLTWTRLPQGF Q9TTC1/126-201_238-271 PVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVKLHPNSQPLFAFEWRDPEKGNTGQLTWTRLPQGF P10272/165-240_277-310 PIIIDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPCRSPWNTPLLPVKKPGTQDYRPVQDLREINKRTPLAPQSQELFAFEWKDPERGISGQLTWTRLPQGF P26810/172-247_284-317 PLIISLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQSLFAFEWKDPEMGISGQLTWTRLPQGF P03356/167-242_279-312 PLIIPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPGMGISGQLTWTRLPQGF P21414/164-239_276-309 PVVVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSPWNTPLLPVKKPGTNDYRPVQDLREINKRVRLHPNSQPLFAFEWKDPEKGNTGQLTWTRLPQGF P26808/172-247_284-317 PLIIPLRAASTPVSIKQYPMSREARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQSLFAFEWRDPEMGISGQLTWTRLPQGF S4X2Q9/164-239_276-309 PVVVELKADASPVSVRQYPMSREAKEGIRPHIQRLIEQGILVPCQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVRLHPNSQPLFAFEWRDPEGGHTGQLTWTRLPQGF M3X186/197-272_309-342 PIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPWNTPLLPVRKPGTRDYRPVQDLREVNKRTPLAPQSQELFAFEWRDPKRGISGQLTWTRLPQGF Q8UN00/706-781_818-851 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF Q9E7M1/704-779_816-849 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPGMGISGQLTWTRLPQGF K7ZK66/686-761_798-831 PVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVKLHPNSQPLFAFEWRDPEKGNTGQLTWTRLPQGF Q7ZKZ7/168-243_280-313 PLIIQLKATATPVSIKQYPMSWEAYQGIKPHIRRLLDQGILVPCRSPWNTPLLPVKKPGTGDYRPVQDLREVNKRVRLSPESQPLFAFEWKDSEMGLSGQLTWTRLPQGF O89811/747-822_859-892 PVLIQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILKPCQSPWNTPLLPVKKPGTEDYRPVQDLREVNKRVRLHSESQLLFAFEWRDPEIGLSGQLTWTRLPQGF Q83371/396-471_508-541 PLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF O89815/164-239_276-309 PVVVELKADATPISVRQYPMSKEAKEGIRPHIRRLLDQGILVACQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVRLHPKSQLLFAFEWRDPEGGQTGQLTWTRLPQGF A0A096XUE1/72-147_184-217 PVVVELKSGASPVAVRQYPMSKEAREGIRPHIQRFLDLGVLVPCQSPWNTPLLPVKKPGTNDYRPVQDLREINKRVKLHPNSQPLFAFEWRDPERGNAGQLTWTRLPQGF K0IXD4/26-101_138-171 PVLIQLKATATPISIRQYPMPHKAYQGIKPHIRRMLDQGILKPCRSPWNTPLLPVKKPGTEDYRPVQDLREVNKRVRLHPESQLLFAFEWRDPEVGLSGQLTWTRLPQGF Q7ZL04/168-243_280-313 PLIIQLKATATPVSIKQYPMSWEAYQGIKPHIRRLLDQGILVPCRSPWNTPLLPVKKPGTGDYRPVQDLREVNKRVRLSPESQPLFAFEWKDSEMGLSGQLTWTRLPQGF A0A074LLR4/68-143_180-213 PLIIPLKATSTPVSIKQYPMSQKARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF A7LKA6/716-791_828-861 PIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPWNTPLLPVKKPGTRDYRPVQDLREVNKRTPLAPQSQELFAFEWRDPERGISGQLTWTRLPQGF #=GC scorecons 95674985565987779999848953996899586875979589699999999998999959999999999899966958499499999979874946999999999999 #=GC scorecons_70 *_**_**__*_**********_**__******_*_**_***_******************_***************_*_*_**_**********_*_************* #=GC scorecons_80 *__*_**____****_*****_**__**_***_*_**_***_**_***************_**************__*_*_**_**********_*__************ #=GC scorecons_90 *____**____**___****__**__**_***_*_*__*_*_**_**********_****_**********_***__*_*_**_******_**__*__************ //