# STOCKHOLM 1.0
#=GF ID 2.60.175.20/FF/270
#=GF DE Major capsid protein L1
#=GF AC 2.60.175.20/FF/270
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 42.851
#=GS P36743/53-452      AC P36743
#=GS P36743/53-452      OS Human papillomavirus type 56
#=GS P36743/53-452      DE Major capsid protein L1
#=GS P36743/53-452      DR GENE3D; 01593ecfd5b8db9a213fafb283a67e74/53-452; 
#=GS P36743/53-452      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 6; 
#=GS A9XCS4/53-452      AC A9XCS4
#=GS A9XCS4/53-452      OS Human papillomavirus type 56
#=GS A9XCS4/53-452      DE Major capsid protein L1
#=GS A9XCS4/53-452      DR GENE3D; 01593ecfd5b8db9a213fafb283a67e74/53-452; 
#=GS A9XCS4/53-452      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 6; 
#=GS A0A0E9GI95/1-262   AC A0A0E9GI95
#=GS A0A0E9GI95/1-262   OS Chlamydia trachomatis
#=GS A0A0E9GI95/1-262   DE L1 (Late) protein
#=GS A0A0E9GI95/1-262   DR GENE3D; 128ddba176cf387a5b4e3fa9bb4f2157/1-262; 
#=GS A0A0E9GI95/1-262   DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS Q05113/18-418      AC Q05113
#=GS Q05113/18-418      OS Human papillomavirus type 53
#=GS Q05113/18-418      DE Major capsid protein L1
#=GS Q05113/18-418      DR GENE3D; 17058285ea64bc16ee9c60be91c68690/18-418; 
#=GS Q05113/18-418      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 6; 
#=GS B2WUQ1/18-418      AC B2WUQ1
#=GS B2WUQ1/18-418      OS Human papillomavirus type 53
#=GS B2WUQ1/18-418      DE Major capsid protein L1
#=GS B2WUQ1/18-418      DR GENE3D; 17058285ea64bc16ee9c60be91c68690/18-418; 
#=GS B2WUQ1/18-418      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 6; 
#=GS Q02515/25-417      AC Q02515
#=GS Q02515/25-417      OS Human papillomavirus type 30
#=GS Q02515/25-417      DE Major capsid protein L1
#=GS Q02515/25-417      DR GENE3D; 757dd701c4b15574b47e57224108ebb2/25-417; 
#=GS Q02515/25-417      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 6; 
#=GS A0A159DUW9/18-409  AC A0A159DUW9
#=GS A0A159DUW9/18-409  OS Human papillomavirus type 66
#=GS A0A159DUW9/18-409  DE Major capsid protein L1
#=GS A0A159DUW9/18-409  DR GENE3D; ef5840ab4a97aacae0b499dc7af9cf5f/18-409; 
#=GS A0A159DUW9/18-409  DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 6; 
#=GS Q80961/18-409      AC Q80961
#=GS Q80961/18-409      OS Human papillomavirus type 66
#=GS Q80961/18-409      DE Major capsid protein L1
#=GS Q80961/18-409      DR GENE3D; ef5840ab4a97aacae0b499dc7af9cf5f/18-409; 
#=GS Q80961/18-409      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 6; 
#=GS B8R9G1/1-108       AC B8R9G1
#=GS B8R9G1/1-108       OS Human papillomavirus
#=GS B8R9G1/1-108       DE Major capsid protein L1
#=GS B8R9G1/1-108       DR GENE3D; 677b994b7cde082773ba85742175ce5a/1-108; 
#=GS B8R9G1/1-108       DR ORG; Viruses; Papillomaviridae; Human papillomavirus; 
#=GS B8R9G5/1-108       AC B8R9G5
#=GS B8R9G5/1-108       OS Human papillomavirus
#=GS B8R9G5/1-108       DE Major capsid protein L1
#=GS B8R9G5/1-108       DR GENE3D; 677b994b7cde082773ba85742175ce5a/1-108; 
#=GS B8R9G5/1-108       DR ORG; Viruses; Papillomaviridae; Human papillomavirus; 
#=GF TC 254.8 2.9E-81
#=GF SQ 10
P36743/53-452              VSKVVATDSYVKRTSIFYHAGSSRLLAVGHPYYSVTKDN-TKTNIPKVSAYQYRVFRVRLPDPNKFGLPDTNIYNPDQERLVWACVGLEVGRGQPLGAGLSGHPLFNRLDDTESSNLANNNVIEDSRDNISVDGKQTQLCIVGCTPAMGEHWTKGAVCKSTQVTTGDCPPLALINTPIEDGDMIDTGFGAMDFKVLQESKAEVPLDIVQSTCKYPDYLKMSADAYGDSMWFYLRREQLFARHYFNRAGKVGETIPAELYLKGSNGREPPPSSVYVATPSGSMITSEAQLFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMTISTATEQLSKYDARKINQYLRHVEEYELQFVFQLCKITLSAEVMAYLHNMNANLLEDWNIGLSPPVATSLEDKYR------------
A9XCS4/53-452              VSKVVATDSYVKRTSIFYHAGSSRLLAVGHPYYSVTKDN-TKTNIPKVSAYQYRVFRVRLPDPNKFGLPDTNIYNPDQERLVWACVGLEVGRGQPLGAGLSGHPLFNRLDDTESSNLANNNVIEDSRDNISVDGKQTQLCIVGCTPAMGEHWTKGAVCKSTQVTTGDCPPLALINTPIEDGDMIDTGFGAMDFKVLQESKAEVPLDIVQSTCKYPDYLKMSADAYGDSMWFYLRREQLFARHYFNRAGKVGETIPAELYLKGSNGREPPPSSVYVATPSGSMITSEAQLFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMTISTATEQLSKYDARKINQYLRHVEEYELQFVFQLCKITLSAEVMAYLHNMNANLLEDWNIGLSPPVATSLEDKYR------------
A0A0E9GI95/1-262           -----------------------------------------------------------------------------------------------------------------------------------MDPKQTQLCIIGCAPAIGEHWTKGTACRSTPTTAGDCPPLELINSPIEDGDMVDTGFGALNFKALQESKSDVPLDIVQSTCKYPDYLKMSADAYGDSMWFYLRREQLFTRHFFNRSGVIGEEIPNDLYIKGSNGRDPPPSSVYVATPSGSMITSEAQLFNKPYWLQRAQGHNNGICWNNQLFVTVVDTTRNTNMTLSATTQSMSTYNSKQIKQYVRHAEEYELQFVFQLCKISLSAEVMAYLHTMNSTLLEDWNIGLSPPVA--------------------
Q05113/18-418              VSKVITTDAYVKRTTIFYHAGSSRLLTVGHPYYPISKSG--KADIPKVSAFQYRVFRVRLPDPNKFGLPDTNIFNPDQERLVWACVGLEIGRGQPLGVGVSGHPLFNRLDDTESSSIAIQDTAPDSRDNVSVDPKQTQLCIIGCAPAIGEHWTKGTACRSTPTTAGDCPPLELINSPIEDGDMVDTGFGALNFKALQESKSDVPLDIVQSTCKYPDYLKMSADAYGDSMWFYLRREQLFTRHFFNRAGVIGEEIPNDLYIKGSNGRDPPPSSVYVATPSGSMITSEAQLFNKPYWLQRAQGHNNGICWNNQLFVTVVDTTRNTNMTLSATTQSMSTYNSKQIKQYVRHAEEYELQFVFQLCKISLSAEVMAYLHTMNSTLLEDWNIGLSPPVATSLEDKYRYV----------
B2WUQ1/18-418              VSKVITTDAYVKRTTIFYHAGSSRLLTVGHPYYPISKSG--KADIPKVSAFQYRVFRVRLPDPNKFGLPDTNIFNPDQERLVWACVGLEIGRGQPLGVGVSGHPLFNRLDDTESSSIAIQDTAPDSRDNVSVDPKQTQLCIIGCAPAIGEHWTKGTACRSTPTTAGDCPPLELINSPIEDGDMVDTGFGALNFKALQESKSDVPLDIVQSTCKYPDYLKMSADAYGDSMWFYLRREQLFTRHFFNRAGVIGEEIPNDLYIKGSNGRDPPPSSVYVATPSGSMITSEAQLFNKPYWLQRAQGHNNGICWNNQLFVTVVDTTRNTNMTLSATTQSMSTYNSKQIKQYVRHAEEYELQFVFQLCKISLSAEVMAYLHTMNSTLLEDWNIGLSPPVATSLEDKYRYV----------
Q02515/25-417              VSKVVPTDAYVKRTNIFYHAGSSRLLAVGHPYYSISKAGNSKTDVPKVSAFQYRVFRVRLPDPNKFGLPDTNVFNPEQERLVWACVGLEIGRGQPLGVGVSGNPLFNKLDDTESSTIANQDTAEDSRDNISVDPKQTQLCIIGCTPAIGEHWAKGTACRSAPPAQGDCPPLELVNSPIQDGDMVDIGFGAMDFKTLQESKSDVPLDISQSTCKYPDYLKMSADAYGDSMWFYLRREQLFARHYFNRAGAIGEQLPSTLYIKGTNNRDPPPSSVYVATPSGSMVTSEAQLFNKPYWLQRAQGHNNGICWGNQVFVTVVDTTRNTNMTISATTQTLSTYNSSQIKQYVRHVEEYELQFVFQLCKISLSAETMAYLHTMNSTLLEGWNIGLSPPAA--------------------
A0A159DUW9/18-409          VSKVVATDTYVKRTSIFYHAGSSRLLAVGHPYYSVSKSG-TKTNIPKVSAYQYRVFRVRLPDPNKFGLPDPSFYNPDQERLVWACVGLEVGRGQPLGAGLSGHPLFNRLDDTEVSNLAGNNVIEDSRDNISVDCKQTQLCIVGCAPALGEHWTKGAVCKSTPGNTGDCPPLALVNTPIEDGDMVDTGFGAMDFKLLQESKAEVPLDIVQSTCKYPDYLKMSADAYGDSMWFYLRREQLFARHYFNRAGNVGEAIPTDLYWKGGNGRDPPPSSVYVATPSGSMITSEAQLFNKPYWLQRAQGHNNGICWGNQVFVTVVDTTRSTNMTINAAKSTLTKYDAREINQYLRHVEEYELQFVFQLCKITLTAEVMAYLHNMNNTLLDDWNIGLSPPVA--------------------
Q80961/18-409              VSKVVATDTYVKRTSIFYHAGSSRLLAVGHPYYSVSKSG-TKTNIPKVSAYQYRVFRVRLPDPNKFGLPDPSFYNPDQERLVWACVGLEVGRGQPLGAGLSGHPLFNRLDDTEVSNLAGNNVIEDSRDNISVDCKQTQLCIVGCAPALGEHWTKGAVCKSTPGNTGDCPPLALVNTPIEDGDMVDTGFGAMDFKLLQESKAEVPLDIVQSTCKYPDYLKMSADAYGDSMWFYLRREQLFARHYFNRAGNVGEAIPTDLYWKGGNGRDPPPSSVYVATPSGSMITSEAQLFNKPYWLQRAQGHNNGICWGNQVFVTVVDTTRSTNMTINAAKSTLTKYDAREINQYLRHVEEYELQFVFQLCKITLTAEVMAYLHNMNNTLLDDWNIGLSPPVA--------------------
B8R9G1/1-108               -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICWNNQLFVTVVDTTRNTNMTLSATTQSMSTYNSKQIKQYVRHAEEYELQFVFQLCKIALSAEVMAYLHTMNSTLLEDWNIGLSPPVATSLEDKYRYVKSAAITCQKD
B8R9G5/1-108               -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICWNNQLFVTVVDTTRNTNMTLSATTQSMSTYNSKQIKQYVRHAEEYELQFVFQLCKIALSAEVMAYLHTMNSTLLEDWNIGLSPPVATSLEDKYRYVKSAAITCQKD
#=GC scorecons             22221122122222122222222222122222211121100211222222122222222222222222221111222222222222222122222221212212222222222121120111112222212231333333323323323333333223233212233333323232333333333333332233133333223333323333333333333333333333333333333233233323123313312331332333333333333333333333333333333333333333333999599799999999969999677675567596666969969969999999999999959799899999699679978999999998933333333110000000000
#=GC scorecons_70          _________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________***_**********************__**_************_**************_*************_***************____________________
#=GC scorecons_80          _________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________***_**_*********_****_**_____*_*____*_**_**_**************_**********_**_***************____________________
#=GC scorecons_90          _________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________***_**_*********_****__________*____*_**_**_**************_*_**_*****_**__**_***********____________________
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