# STOCKHOLM 1.0
#=GF ID 2.60.175.20/FF/177
#=GF DE Major capsid protein L1
#=GF AC 2.60.175.20/FF/177
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 29.804
#=GS P24838/18-411      AC P24838
#=GS P24838/18-411      OS Human papillomavirus type 39
#=GS P24838/18-411      DE Major capsid protein L1
#=GS P24838/18-411      DR GENE3D; 3a9c647868750ea8b91c70158d76b535/18-411; 
#=GS P24838/18-411      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 7; 
#=GS T2A5M4/18-411      AC T2A5M4
#=GS T2A5M4/18-411      OS Human papillomavirus type 39
#=GS T2A5M4/18-411      DE Major capsid protein L1
#=GS T2A5M4/18-411      DR GENE3D; 3a9c647868750ea8b91c70158d76b535/18-411; 
#=GS T2A5M4/18-411      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 7; 
#=GS T2A712/20-414      AC T2A712
#=GS T2A712/20-414      OS Human papillomavirus type 68
#=GS T2A712/20-414      DE Major capsid protein L1
#=GS T2A712/20-414      DR GENE3D; 5b5901707a094116ef4a6cb3f9bbb680/20-414; 
#=GS T2A712/20-414      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 7; 
#=GS P27964/20-414      AC P27964
#=GS P27964/20-414      OS Human papillomavirus type me180
#=GS P27964/20-414      DE Major capsid protein L1
#=GS P27964/20-414      DR GENE3D; 5b5901707a094116ef4a6cb3f9bbb680/20-414; 
#=GS P27964/20-414      DR ORG; Viruses; Papillomaviridae; Human papillomavirus type me180; 
#=GS A0A0E9EGN8/20-414  AC A0A0E9EGN8
#=GS A0A0E9EGN8/20-414  OS Chlamydia trachomatis
#=GS A0A0E9EGN8/20-414  DE L1 (Late) protein
#=GS A0A0E9EGN8/20-414  DR GENE3D; 5b5901707a094116ef4a6cb3f9bbb680/20-414; 
#=GS A0A0E9EGN8/20-414  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS Q4U6S8/1-249       AC Q4U6S8
#=GS Q4U6S8/1-249       OS Human papillomavirus type 39
#=GS Q4U6S8/1-249       DE Major capsid protein L1
#=GS Q4U6S8/1-249       DR GENE3D; 67bec4975a8f2c1bd459a2b695769167/1-249; 
#=GS Q4U6S8/1-249       DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 7; 
#=GS T2A7A0/20-415      AC T2A7A0
#=GS T2A7A0/20-415      OS Human papillomavirus type 70
#=GS T2A7A0/20-415      DE Major capsid protein L1
#=GS T2A7A0/20-415      DR GENE3D; a6548d5ec36de0193281e4f614549632/20-415; 
#=GS T2A7A0/20-415      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 7; 
#=GS P50793/20-415      AC P50793
#=GS P50793/20-415      OS Human papillomavirus type 70
#=GS P50793/20-415      DE Major capsid protein L1
#=GS P50793/20-415      DR GENE3D; a6548d5ec36de0193281e4f614549632/20-415; 
#=GS P50793/20-415      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 7; 
#=GF TC 300.4 4.9E-93
#=GF SQ 8
P24838/18-411              VAKVVNTDDYVTRTGIYYYAGSSRLLTVGHPYFKVGMNGGRKQDIPKVSAYQYRVFRVTLPDPNKFSIPDASLYNPETQRLVWACVGVEVGRGQPLGVGISGHPLYNRQDDTENSPFSSTTN-KDSRDNVSVDYKQTQLCIIGCVPAIGEHWGKGKACKPNNVSTGDCPPLELVNTPIEDGDMIDTGYGAMDFGALQETKSEVPLDICQSICKYPDYLQMSADVYGDSMFFCLRREQLFARHFWNRGGMVGDAIPAQLYIKGTDIRANPGSSVYCPSPSGSMVTSDSQLFNKPYWLHKAQGHNNGICWHNQLFLTVVDTTRSTNFTLSTSIESSIPSTYDPSKFKEYTRHVEEYDLQFIFQLCTVTLTTDVMSYIHTMNSSILDNWNFAVAPPPS-----
T2A5M4/18-411              VAKVVNTDDYVTRTGIYYYAGSSRLLTVGHPYFKVGMNGGRKQDIPKVSAYQYRVFRVTLPDPNKFSIPDASLYNPETQRLVWACVGVEVGRGQPLGVGISGHPLYNRQDDTENSPFSSTTN-KDSRDNVSVDYKQTQLCIIGCVPAIGEHWGKGKACKPNNVSTGDCPPLELVNTPIEDGDMIDTGYGAMDFGALQETKSEVPLDICQSICKYPDYLQMSADVYGDSMFFCLRREQLFARHFWNRGGMVGDAIPAQLYIKGTDIRANPGSSVYCPSPSGSMVTSDSQLFNKPYWLHKAQGHNNGICWHNQLFLTVVDTTRSTNFTLSTSIESSIPSTYDPSKFKEYTRHVEEYDLQFIFQLCTVTLTTDVMSYIHTMNSSILDNWNFAVAPPPS-----
T2A712/20-414              --KVVNTDDYVTRTGIYYYAGTSRLLTVGHPYFKVPMSGGRKQDIPKVSAYQYRVFRISLPDPNKFSLPESTLYNPDTQRLVWACVGVEIGRGQPLGVGLSGHPLYNRLDDTENSPFSSNKNPKDSRDNVSVDYKQTQLCIIGCVPAIGEHWAKGKSCKPSNVQPGDCPPLELVNTPIQDGDMIDTGYGAMDFSTLQETKSEVPLDICQSVCKYPDYLQMSADVYGDSMFFCLRREQLFARHFWNRGGMVGDTIPTELYIKGTDIRDSPSSYVYAPSPSGSMVSSDSQLFNKPYWLHKAQGHNNGICWHNQLFLTVVDTTRSTNFTLSTTTESAVPNIYDPNKFKEYIRHVEEYDLQFIFQLCTITLSTDVMSYIHTMNPAILDDWNFGVAPPPSAS---
P27964/20-414              --KVVNTDDYVTRTGIYYYAGTSRLLTVGHPYFKVPMSGGRKQDIPKVSAYQYRVFRISLPDPNKFSLPESTLYNPDTQRLVWACVGVEIGRGQPLGVGLSGHPLYNRLDDTENSPFSSNKNPKDSRDNVSVDYKQTQLCIIGCVPAIGEHWAKGKSCKPSNVQPGDCPPLELVNTPIQDGDMIDTGYGAMDFSTLQETKSEVPLDICQSVCKYPDYLQMSADVYGDSMFFCLRREQLFARHFWNRGGMVGDTIPTELYIKGTDIRDSPSSYVYAPSPSGSMVSSDSQLFNKPYWLHKAQGHNNGICWHNQLFLTVVDTTRSTNFTLSTTTESAVPNIYDPNKFKEYIRHVEEYDLQFIFQLCTITLSTDVMSYIHTMNPAILDDWNFGVAPPPSAS---
A0A0E9EGN8/20-414          --KVVNTDDYVTRTGIYYYAGTSRLLTVGHPYFKVPMSGGRKQDIPKVSAYQYRVFRISLPDPNKFSLPESTLYNPDTQRLVWACVGVEIGRGQPLGVGLSGHPLYNRLDDTENSPFSSNKNPKDSRDNVSVDYKQTQLCIIGCVPAIGEHWAKGKSCKPSNVQPGDCPPLELVNTPIQDGDMIDTGYGAMDFSTLQETKSEVPLDICQSVCKYPDYLQMSADVYGDSMFFCLRREQLFARHFWNRGGMVGDTIPTELYIKGTDIRDSPSSYVYAPSPSGSMVSSDSQLFNKPYWLHKAQGHNNGICWHNQLFLTVVDTTRSTNFTLSTTTESAVPNIYDPNKFKEYIRHVEEYDLQFIFQLCTITLSTDVMSYIHTMNPAILDDWNFGVAPPPSAS---
Q4U6S8/1-249               ---------YVTRTGIYYYAGSSRLLTVGHPYFKVGMNGGRKQDIPKVSAYQYRVFRVTLPDPNKFSIPDASLYNPETQRLVWACVGVEVGRGQPLGVGISGHPLYNRQDDTENSPFSSTTN-KDSRDNVSVDYKQTQLCIIGCVPAIGEHWGKGKACKPNNVSTGDCPPLELVNTPIEDGDMIDTGYGAMDFGALQETKSEVPLDICQSICKYPDYLQMSADVYGDSMFFCLRREQLFARHFWNRGGMVNRRLQAAAW---------------------------------------------------------------------------------------------------------------------------------------------
T2A7A0/20-415              --KVVNTDDYVTRTGIYYYAGSSRLLTVGHPYFKVPVNGGRKQEIPKVSAYQYRVFRVSLPDPNKFGLPDPSLYNPDTQRLVWACIGVEIGRGQPLGVGVSGHPLYNRLDDTENSHFSSAVSTQDSRDNVSVDYKQTQLCIIGCVPAMGEHWAKGKACK--STQQGDCPPLELVNTAIEDGDMIDTGYGAMDFRTLQETKSEVPLDICQSVCKYPDYLQMSADVYGDSMFFCLRKEQLFARHFWNRGGMVGDTIPSELYIKGTDIRERPGTHVYSPSPSGSMVSSDSQLFNKPYWLHKAQGHNNGICWHNQLFITVVDTTRSTNFTLSACTETAIPAVYSPTKFKEYTRHVEEYDLQFIFQLCTITLTADVMAYIHTMNPAILDNWNIGVTPPPSASLVD
P50793/20-415              --KVVNTDDYVTRTGIYYYAGSSRLLTVGHPYFKVPVNGGRKQEIPKVSAYQYRVFRVSLPDPNKFGLPDPSLYNPDTQRLVWACIGVEIGRGQPLGVGVSGHPLYNRLDDTENSHFSSAVSTQDSRDNVSVDYKQTQLCIIGCVPAMGEHWAKGKACK--STQQGDCPPLELVNTAIEDGDMIDTGYGAMDFRTLQETKSEVPLDICQSVCKYPDYLQMSADVYGDSMFFCLRKEQLFARHFWNRGGMVGDTIPSELYIKGTDIRERPGTHVYSPSPSGSMVSSDSQLFNKPYWLHKAQGHNNGICWHNQLFITVVDTTRSTNFTLSACTETAIPAVYSPTKFKEYTRHVEEYDLQFIFQLCTITLTADVMAYIHTMNPAILDNWNIGVTPPPSASLVD
#=GC scorecons             0044444449999999999996999999999999957699999799999999999997599999996697569999699999999799969999999995999999994999999699954617999999999999999999999997999959996995366549999999999969699999999999999469999999999999996999999999999999999999997999999999999999554655455444444421422244244444444244444444444444444444444444444344444444444444322422342242424444424444444444444444344234442444444224442442243444411000
#=GC scorecons_70          _________**************************_**********************_********_**_****************************_********_**********__*_*****************************_******__**__****************************__*******************************************************___*__________________________________________________________________________________________________________________________________________________
#=GC scorecons_80          _________************_*************___********************_*******__**__****_************_*********_********_******_***_____****************************_***_**______***********_*_**************__***************_***************************************______________________________________________________________________________________________________________________________________________________
#=GC scorecons_90          _________************_*************___*****_*************__*******__*___****_********_***_*********_********_******_***_____***********************_****_***_**______***********_*_**************__***************_***********************_***************______________________________________________________________________________________________________________________________________________________
//