# STOCKHOLM 1.0
#=GF ID 2.60.175.20/FF/143
#=GF DE Major capsid protein L1
#=GF AC 2.60.175.20/FF/143
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 33.550
#=GS Q2VJB4/162-556     AC Q2VJB4
#=GS Q2VJB4/162-556     OS Human papillomavirus type 102
#=GS Q2VJB4/162-556     DE Major capsid protein L1
#=GS Q2VJB4/162-556     DR GENE3D; 051296805b4874e2f96c05bd1e1550b9/162-556; 
#=GS Q2VJB4/162-556     DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS Q705E3/46-441      AC Q705E3
#=GS Q705E3/46-441      OS Human papillomavirus type 81
#=GS Q705E3/46-441      DE Major capsid protein L1
#=GS Q705E3/46-441      DR GENE3D; 109b96e6dbbf145e97a6778fa818defa/46-441; 
#=GS Q705E3/46-441      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS A0A158LD57/18-414  AC A0A158LD57
#=GS A0A158LD57/18-414  OS Chlamydia trachomatis
#=GS A0A158LD57/18-414  DE L1 (Late) protein
#=GS A0A158LD57/18-414  DR GENE3D; 3125fe4e690038cfee7a3c229f9e85ce/18-414; 
#=GS A0A158LD57/18-414  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS Q82004/18-414      AC Q82004
#=GS Q82004/18-414      OS Human papillomavirus type 72
#=GS Q82004/18-414      DE Major capsid protein L1
#=GS Q82004/18-414      DR GENE3D; 3125fe4e690038cfee7a3c229f9e85ce/18-414; 
#=GS Q82004/18-414      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS A0A159E0B5/18-413  AC A0A159E0B5
#=GS A0A159E0B5/18-413  OS Human papillomavirus type 81
#=GS A0A159E0B5/18-413  DE Major capsid protein L1
#=GS A0A159E0B5/18-413  DR GENE3D; 53aa2faa4918382a1073b5e2f6074bf7/18-413; 
#=GS A0A159E0B5/18-413  DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS Q9WNM4/18-412      AC Q9WNM4
#=GS Q9WNM4/18-412      OS Human papillomavirus type 83
#=GS Q9WNM4/18-412      DE Major capsid protein L1
#=GS Q9WNM4/18-412      DR GENE3D; 8315beb2160cf053cc4f96dac0c30832/18-412; 
#=GS Q9WNM4/18-412      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS P50822/18-413      AC P50822
#=GS P50822/18-413      OS Human papillomavirus type 61
#=GS P50822/18-413      DE Major capsid protein L1
#=GS P50822/18-413      DR GENE3D; a6007b46e671cee82a8eeab541b32fb0/18-413; 
#=GS P50822/18-413      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS A0A0E9EH89/18-413  AC A0A0E9EH89
#=GS A0A0E9EH89/18-413  OS Chlamydia trachomatis
#=GS A0A0E9EH89/18-413  DE L1 (Late) protein
#=GS A0A0E9EH89/18-413  DR GENE3D; a6007b46e671cee82a8eeab541b32fb0/18-413; 
#=GS A0A0E9EH89/18-413  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0P0ESE6/18-413  AC A0A0P0ESE6
#=GS A0A0P0ESE6/18-413  OS Human papillomavirus type 61
#=GS A0A0P0ESE6/18-413  DE Major capsid protein L1
#=GS A0A0P0ESE6/18-413  DR GENE3D; a6007b46e671cee82a8eeab541b32fb0/18-413; 
#=GS A0A0P0ESE6/18-413  DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS Q8JTB7/34-429      AC Q8JTB7
#=GS Q8JTB7/34-429      OS Human papillomavirus type 89
#=GS Q8JTB7/34-429      DE Major capsid protein L1
#=GS Q8JTB7/34-429      DR GENE3D; a7b4f8dabc9faff259c142fa012d6a61/34-429; 
#=GS Q8JTB7/34-429      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS A0A158LGE2/34-429  AC A0A158LGE2
#=GS A0A158LGE2/34-429  OS Chlamydia trachomatis
#=GS A0A158LGE2/34-429  DE L1 (Late) protein
#=GS A0A158LGE2/34-429  DR GENE3D; a7b4f8dabc9faff259c142fa012d6a61/34-429; 
#=GS A0A158LGE2/34-429  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS P50823/18-410      AC P50823
#=GS P50823/18-410      OS Human papillomavirus type 62
#=GS P50823/18-410      DE Major capsid protein L1
#=GS P50823/18-410      DR GENE3D; a845c01a3e757013231acc78dfba3f7b/18-410; 
#=GS P50823/18-410      DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS A0A159DTR5/18-412  AC A0A159DTR5
#=GS A0A159DTR5/18-412  OS Human papillomavirus type 89
#=GS A0A159DTR5/18-412  DE Major capsid protein L1
#=GS A0A159DTR5/18-412  DR GENE3D; ebb9b67a55ca746ca0948bde70a58d89/18-412; 
#=GS A0A159DTR5/18-412  DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GS A0A059UAS5/18-414  AC A0A059UAS5
#=GS A0A059UAS5/18-414  OS Human papillomavirus type 72b
#=GS A0A059UAS5/18-414  DE Major capsid protein L1
#=GS A0A059UAS5/18-414  DR GENE3D; f34f7af4dddadac3d0b9c44cffc1f298/18-414; 
#=GS A0A059UAS5/18-414  DR ORG; Viruses; Papillomaviridae; Alphapapillomavirus; Alphapapillomavirus 3; 
#=GF TC 867.0 7.6E-265
#=GF SQ 14
Q2VJB4/162-556             VSKVMSTDRYVTRTSLFYYGGSSRLLTVGHPYYPVQVNG-QGKKANIPKVSGYQYRVFRVKLPDPNKFALPDTALYNPDTERMVWACRGVEVGRGQPLGVGTSGHPLYNRLDDTENTPLLAAADADRRDNVSVDYKQTQLLIIGCKPPIGEHWAKGTVCTGVSSKAGDCPPLQFVNSTIQDGDMVETGYGAMDFANLQESKSEVPIDICTGICKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRHGTMGEELPASYYIPGTSGNNRQTPTSYVYAPTPSGSMVTSDSQLFNKPYWLQRAQGHNNGICWFNEVFVTVVDTTRSTNITISAAT-SQSGEYQASNFKEYLRHTEEYDLQFIFQLCKIRITPEIMAYLHGMNESLLDDWNFGVLPPPS-
Q705E3/46-441              VSKVISTDAYVTRTNLFYYGGSSRLLTVGHPYCTLTIGT-QGKRSTIPKVSGYQYRVFRVKLPDPNKFALPDGTLYNPDTERMVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTAYLAAASEDSRDNISVDYKQTQLLIIGCKPPIGEHWARGTFCANVAPAQNECPPLEFKNTTIQDGDMVETGYGAIDFKALQENKSEVPLDICNTTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRHGTMGEALPADLYMKGAAGSDRITPGSYIYAPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNEMFVTVVDTTRSTNFTICTAT-SAAAEYKASNFKEFLRHTEEYDLQFIFQLCKIQLTPEIMAYLHNMNKALLDDWNFGVLPPPST
A0A158LD57/18-414          VSKVLSTDRYVQRTNLYYYGGSSRLLTVGHPYCAIPLNG-QGKKNTIPKVSGYQYRVFRVKLPDPNKFALPDGTLYNPDTERLVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTSLLVADNSDSRDNVSVDYKQTQLLIIGCKPPIGEHWTKGTPCAGSNSQPTDCPPLEFTNSTIQDGDMVETGYGAIDFATLQENKSEVPLDICTTTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGTMGEALPASLYLKGASGSDRVTPGSYIYSPTPSGSMVSSDAQLFNKPYWLQRAQGHNNGICWFNELFVTVVDTTRSTNVTICTATASSVSEYTASNFREYLRHTEEFDLQFIFQLCKIHLTPEIMAYLHNMNKALLDDWNFGVVPPPST
Q82004/18-414              VSKVLSTDRYVQRTNLYYYGGSSRLLTVGHPYCAIPLNG-QGKKNTIPKVSGYQYRVFRVKLPDPNKFALPDGTLYNPDTERLVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTSLLVADNSDSRDNVSVDYKQTQLLIIGCKPPIGEHWTKGTPCAGSNSQPTDCPPLEFTNSTIQDGDMVETGYGAIDFATLQENKSEVPLDICTTTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGTMGEALPASLYLKGASGSDRVTPGSYIYSPTPSGSMVSSDAQLFNKPYWLQRAQGHNNGICWFNELFVTVVDTTRSTNVTICTATASSVSEYTASNFREYLRHTEEFDLQFIFQLCKIHLTPEIMAYLHNMNKALLDDWNFGVVPPPST
A0A159E0B5/18-413          VSKVISTDAYVTRTNLFYYGGSSRLLTVGHPYCTLTIGT-QGKRSTIPKVSGYQYRVFRVKLPDPNKFALPDGTLYNPDTERMVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTAYLAAASEDSRDNISVDYKQTQLLIIGCKPPIGEHWARGTFCANVAPAQNECPPLEFKNTTIQDGDMVETGYGAIDFKALQENKSEVPLDICNTTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRHGTMGEALPADLYMKGAAGSDRITPGSYIYAPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNEMFVTVVDTTRSTNFTICTAT-SAAAEYKASNFKEFLRHTEEYDLQFIFQLCKIQLTPEIMAYLHNMNKALLDDWNFGVLPPPST
Q9WNM4/18-412              VSKVISTDRYVTRTNLFYYGGSSRLLTVGHPYYPVQVNG-QGKKATIPKVSGYQYRVFRIRLPDPNKFSLPDTSLYNPDTERMVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTPLLAAADTDRRDNVSVDYKQTQLIIIGCKPPIGEHWAKGTVCSGVSPQRGDCPPLQFVNSTIQDGDMVETGYGAMDFATLQESKSEVPIDICTATCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRHGTMGEVLPTSYYIPGTSANSRNTLTSYIYAPTPSGSLVSSDSQLFNKPYWLHRAQGHNNGICWFNELFVTVVDTTRSTNITISAAA-TQANEYTASNFKEYLRHTEEYDLQVILQLCKIHLTPEIMAYLHSMNEHLLDEWNFGVLPPPS-
P50822/18-413              VSKVISTDRYVQRTNLFYYGGSSRLLTVGHPYCSLQLDGLQGKKNTIPKVSGYQYRVFRVQLPDPNKFALPDGTLYNPDTERMVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTTLLVAESSDSRDNVSVDYKQTQLLIVGCKPPIGEHWTKGTACANPAPRPTDCPPLEFTNTTIQDGDMVETGYGAIDFAALQENKSEVPLDICTTICKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGVMGEALPDSYYLKGA--NDKAAPGSYIYSPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNELFVTVVDTTRSTNLTICTATSPPVSEYKATSFREYLRHTEEFDLQFIFQLCKIHLTPEIMAYLHNMNKALLDDWNFGVVPPPST
A0A0E9EH89/18-413          VSKVISTDRYVQRTNLFYYGGSSRLLTVGHPYCSLQLDGLQGKKNTIPKVSGYQYRVFRVQLPDPNKFALPDGTLYNPDTERMVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTTLLVAESSDSRDNVSVDYKQTQLLIVGCKPPIGEHWTKGTACANPAPRPTDCPPLEFTNTTIQDGDMVETGYGAIDFAALQENKSEVPLDICTTICKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGVMGEALPDSYYLKGA--NDKAAPGSYIYSPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNELFVTVVDTTRSTNLTICTATSPPVSEYKATSFREYLRHTEEFDLQFIFQLCKIHLTPEIMAYLHNMNKALLDDWNFGVVPPPST
A0A0P0ESE6/18-413          VSKVISTDRYVQRTNLFYYGGSSRLLTVGHPYCSLQLDGLQGKKNTIPKVSGYQYRVFRVQLPDPNKFALPDGTLYNPDTERMVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTTLLVAESSDSRDNVSVDYKQTQLLIVGCKPPIGEHWTKGTACANPAPRPTDCPPLEFTNTTIQDGDMVETGYGAIDFAALQENKSEVPLDICTTICKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGVMGEALPDSYYLKGA--NDKAAPGSYIYSPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNELFVTVVDTTRSTNLTICTATSPPVSEYKATSFREYLRHTEEFDLQFIFQLCKIHLTPEIMAYLHNMNKALLDDWNFGVVPPPST
Q8JTB7/34-429              VSKVLSTDRYVQRTNLYYYGGSSRLITVGHPYYTVQVNG-ANKKANIPKVSGYQYRVFRVRLPDPNKFGLPDASLYNPDTERLVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENASLLVAADVDSRDNISVDYKQTQLLIIGCKPPIGEHWAKGTVCSSVVPQQGDCPPLQLLNTTIEDGDMVETGYGAMDFSKLQESKSEVPIDICDSTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGVMGEDLPKTLYMPGSAANNRNTLTSYVYAPTPSGSMVTSDSQLFNKPYWLHRAQGHNNGICWFNELFVTVVDTTRSTNLTICAAS-QSGTEYSSTRFKEYLRHTEEYDLQFIFQLCKIHLTPEIMSYLHNMNDTLLDEWNFGVIPPPST
A0A158LGE2/34-429          VSKVLSTDRYVQRTNLYYYGGSSRLITVGHPYYTVQVNG-ANKKANIPKVSGYQYRVFRVRLPDPNKFGLPDASLYNPDTERLVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENASLLVAADVDSRDNISVDYKQTQLLIIGCKPPIGEHWAKGTVCSSVVPQQGDCPPLQLLNTTIEDGDMVETGYGAMDFSKLQESKSEVPIDICDSTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGVMGEDLPKTLYMPGSAANNRNTLTSYVYAPTPSGSMVTSDSQLFNKPYWLHRAQGHNNGICWFNELFVTVVDTTRSTNLTICAAS-QSGTEYSSTRFKEYLRHTEEYDLQFIFQLCKIHLTPEIMSYLHNMNDTLLDEWNFGVIPPPST
P50823/18-410              VSKVLSTDTYVTRTNLFYYGGSSRLLTVGHPYCTLQVG--QGKRATIPKVSGYQYRVFRVKLPDPNKFTLPDATLYNPDTERMVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTSLLAAANDDSRDNISVDYKQTQLLIVGCKPPIGEHWTKGTLCPNAAPAPTECPPLEFKNTTIQDGDMVETGYGAIDFKSLQESKSEVPLDICTSTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRHGTMGEALPTDLYMKGTPGSDRQMPGSYIYAPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNELFVTVVDTTRSTNFTICTAS-TAAAEYKATNFREFLRHTEEFDLQFIFQLCKIQLTPEIMAYLHNMNKDLLDDWNFGVLPPP--
A0A159DTR5/18-412          VSKVLSTDRYVQRTNLYYYGGSSRLITVGHPYYTVQVNG-ANKKANIPKVSGYQYRVFRVRLPDPNKFGLPDASLYNPDTERLVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENASLLVAADTDSRDNISVDYKQTQLLIIGCKPPIGEHWAKGTVCSSVVPQQGDCPPLQLLNTTIEDGDMVETGYGAMDFSTLQESKSEVPIDICDSTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGVMGEDLPKTLYMPGSAANNRNTLTSYVYAPTPSGSMVTSDSQLFNKPYWLHRAQGHNNGICWFNELFVTVVDTTRSTNLTICAAS-QSATEYSSTRFKEYLRHTEEYDLQFIFQLCKIHLTPEIMSYLHNMNDTLLDEWNFGVIPPPS-
A0A059UAS5/18-414          VSKVISTDRYVQRTNLYYYGGSSRLLTVGHPYYAIPVNG-RDRKTAVPKVSGFQYRVFRVKLPDPNKFALPDGTLYNPDTERMVWACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTSLLVADNADSRDNISVDYKQTQLLIIGCKPPIGEHWAKGTACAGSVPSTTECPPLEFKNTTIEDGDMVETGYGAMDFAMLQENKSEVPLDICATTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGTMGEQLPANLFLKGATASQADKLSSYIYSPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNELFVTVVDTTRSTNVTICTATDSSVTEYKASSFREYLRHTEEFDLQFIFQLCKIHLTPEIMAYLHNMNKALLDDWNFGVVPPPST
#=GC scorecons             99996999699599897999999997999999655565605687568999998999999869999999599955999999996999999899999999999999999999999999757969553979997999999999897999999999968994955447445799996739699699999999999699549996999996999556999999999999999999999999999999999996959994994458659533656355599796999999896997999999999799999999999999799999999999959976960444499466597979999997999898999996899999699979955999799999599974
#=GC scorecons_70          ****_******_*********************_________**__**************_*******_***__*******************************************_**_*___********************************_*____*___*******_*******************__***_*********__**************************************_***_**___*__*_____*____****_*************************************************_*****______**_*__************************************__*********_****_
#=GC scorecons_80          ****_***_**_*************_******__________**__**************_*******_***__********_*********************************__**_*___*_***_**********************_***_*________*****___*_**_***********_**__***_*****_***___***********************************_*_***_**___*__*__________****_********_************_***************************_***_*______**____*_********************_******_******__*********_****_
#=GC scorecons_90          ****_***_**_****_********_******__________*___**************_*******_***__********_*********************************___*_*___*_***_***********_**********__**_*_________****___*_**_***********_**__***_*****_***___***********************************_*_***_**___*__*__________**_*_********_**_*********_**************_************_**__*______**____*_*_******_***_*******_******_***_**__***_*****_***__
//