# STOCKHOLM 1.0
#=GF ID 2.40.70.10/FF/23009
#=GF DE Nuclear receptor-interacting protein 2
#=GF AC 2.40.70.10/FF/23009
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 62.925
#=GS Q9JHR9/88-212       AC Q9JHR9
#=GS Q9JHR9/88-212       OS Mus musculus
#=GS Q9JHR9/88-212       DE Nuclear receptor-interacting protein 2
#=GS Q9JHR9/88-212       DR GENE3D; e929b0c9b5ff691de5c50947ec031486/88-212; 
#=GS Q9JHR9/88-212       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q9JHR9/88-212       DR GO; GO:0000122; GO:0005515; GO:0005634; GO:0005737; GO:0007219; 
#=GS Q9BQI9/142-275      AC Q9BQI9
#=GS Q9BQI9/142-275      OS Homo sapiens
#=GS Q9BQI9/142-275      DE Nuclear receptor-interacting protein 2
#=GS Q9BQI9/142-275      DR GENE3D; 22190c4060037898159671bb425facfd/142-275; 
#=GS Q9BQI9/142-275      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q9BQI9/142-275      DR GO; GO:0005515; GO:0005737; 
#=GS E9QAD1/109-218      AC E9QAD1
#=GS E9QAD1/109-218      OS Mus musculus
#=GS E9QAD1/109-218      DE Nuclear receptor-interacting protein 2
#=GS E9QAD1/109-218      DR GENE3D; 3a5d5bd46cc5286b0a716dbf11a3a687/109-218; 
#=GS E9QAD1/109-218      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A0N4SUN5/31-152   AC A0A0N4SUN5
#=GS A0A0N4SUN5/31-152   OS Mus musculus
#=GS A0A0N4SUN5/31-152   DE Nuclear receptor-interacting protein 2
#=GS A0A0N4SUN5/31-152   DR GENE3D; 9c312cc39afba55df0744819e57f2ebb/31-152; 
#=GS A0A0N4SUN5/31-152   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS M3YDE5/112-251      AC M3YDE5
#=GS M3YDE5/112-251      OS Mustela putorius furo
#=GS M3YDE5/112-251      DE Uncharacterized protein
#=GS M3YDE5/112-251      DR GENE3D; 27d65ef17895b31fa23cc23e8b2127ec/112-251; 
#=GS M3YDE5/112-251      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Mustelinae; Mustela; Mustela putorius; Mustela putorius furo; 
#=GS D4ABB1/89-202       AC D4ABB1
#=GS D4ABB1/89-202       OS Rattus norvegicus
#=GS D4ABB1/89-202       DE Nuclear receptor-interacting protein 2
#=GS D4ABB1/89-202       DR GENE3D; 2a9e02c0e93cd1fddcaef7b623458b8e/89-202; 
#=GS D4ABB1/89-202       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS M3X725/146-281      AC M3X725
#=GS M3X725/146-281      OS Felis catus
#=GS M3X725/146-281      DE Uncharacterized protein
#=GS M3X725/146-281      DR GENE3D; 34a251eaa84abcb4fd043f03457c5237/146-281; 
#=GS M3X725/146-281      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis; Felis catus; 
#=GS I3MQW6/108-246      AC I3MQW6
#=GS I3MQW6/108-246      OS Ictidomys tridecemlineatus
#=GS I3MQW6/108-246      DE Uncharacterized protein
#=GS I3MQW6/108-246      DR GENE3D; 3f12bc73ad12b0f3b8cb2631e974734d/108-246; 
#=GS I3MQW6/108-246      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys; Ictidomys tridecemlineatus; 
#=GS L5JU81/109-249      AC L5JU81
#=GS L5JU81/109-249      OS Pteropus alecto
#=GS L5JU81/109-249      DE Nuclear receptor-interacting protein 2
#=GS L5JU81/109-249      DR GENE3D; 47b1c63d0fe80966dc7462ed21d9472c/109-249; 
#=GS L5JU81/109-249      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Pteropus; Pteropus alecto; 
#=GS H2NG46/140-275      AC H2NG46
#=GS H2NG46/140-275      OS Pongo abelii
#=GS H2NG46/140-275      DE Uncharacterized protein
#=GS H2NG46/140-275      DR GENE3D; 5a557061b67283ddf941a2711c5d8d4f/140-275; 
#=GS H2NG46/140-275      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS H2Q576/141-275      AC H2Q576
#=GS H2Q576/141-275      OS Pan troglodytes
#=GS H2Q576/141-275      DE Uncharacterized protein
#=GS H2Q576/141-275      DR GENE3D; 6f2e25e8d735bbd75650c70bed80952d/141-275; 
#=GS H2Q576/141-275      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS A0A1D5RGW8/89-225   AC A0A1D5RGW8
#=GS A0A1D5RGW8/89-225   OS Macaca mulatta
#=GS A0A1D5RGW8/89-225   DE Uncharacterized protein
#=GS A0A1D5RGW8/89-225   DR GENE3D; 87604138d6a4e90fa16257c1890847ab/89-225; 
#=GS A0A1D5RGW8/89-225   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS A0A096N508/89-225   AC A0A096N508
#=GS A0A096N508/89-225   OS Papio anubis
#=GS A0A096N508/89-225   DE Uncharacterized protein
#=GS A0A096N508/89-225   DR GENE3D; 87604138d6a4e90fa16257c1890847ab/89-225; 
#=GS A0A096N508/89-225   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS A0A1A6HFK7/88-223   AC A0A1A6HFK7
#=GS A0A1A6HFK7/88-223   OS Neotoma lepida
#=GS A0A1A6HFK7/88-223   DE Uncharacterized protein
#=GS A0A1A6HFK7/88-223   DR GENE3D; 87cf360d4cc876053e35f6cd73842e15/88-223; 
#=GS A0A1A6HFK7/88-223   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Neotominae; Neotoma; Neotoma lepida; 
#=GS G3GUI5/63-173       AC G3GUI5
#=GS G3GUI5/63-173       OS Cricetulus griseus
#=GS G3GUI5/63-173       DE Nuclear receptor-interacting protein 2
#=GS G3GUI5/63-173       DR GENE3D; 95a2e58b578badd42bbec7bc7ff894d3/63-173; 
#=GS G3GUI5/63-173       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetulus; Cricetulus griseus; 
#=GS G1QRD7/141-278      AC G1QRD7
#=GS G1QRD7/141-278      OS Nomascus leucogenys
#=GS G1QRD7/141-278      DE Uncharacterized protein
#=GS G1QRD7/141-278      DR GENE3D; 9e8f7f9a75f9ec82ca9c2ada44de405e/141-278; 
#=GS G1QRD7/141-278      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS F6SX65/125-260      AC F6SX65
#=GS F6SX65/125-260      OS Macaca mulatta
#=GS F6SX65/125-260      DE Uncharacterized protein
#=GS F6SX65/125-260      DR GENE3D; 9edb05bae1dd3e3e79a43078fb951cb4/125-260; 
#=GS F6SX65/125-260      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS A0A0D9RFT7/137-272  AC A0A0D9RFT7
#=GS A0A0D9RFT7/137-272  OS Chlorocebus sabaeus
#=GS A0A0D9RFT7/137-272  DE Uncharacterized protein
#=GS A0A0D9RFT7/137-272  DR GENE3D; b11e3c8321f840719342eee8bc4ff23d/137-272; 
#=GS A0A0D9RFT7/137-272  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS G3SFC6/141-275      AC G3SFC6
#=GS G3SFC6/141-275      OS Gorilla gorilla gorilla
#=GS G3SFC6/141-275      DE Uncharacterized protein
#=GS G3SFC6/141-275      DR GENE3D; bbe8e0fb28cc493985d33d37aa73e4eb/141-275; 
#=GS G3SFC6/141-275      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS D3ZPL0/89-223       AC D3ZPL0
#=GS D3ZPL0/89-223       OS Rattus norvegicus
#=GS D3ZPL0/89-223       DE Nuclear receptor-interacting protein 2
#=GS D3ZPL0/89-223       DR GENE3D; bd84a1b1008b0e091e4d74722c836e24/89-223; 
#=GS D3ZPL0/89-223       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS D2GYE7/105-234      AC D2GYE7
#=GS D2GYE7/105-234      OS Ailuropoda melanoleuca
#=GS D2GYE7/105-234      DE Putative uncharacterized protein
#=GS D2GYE7/105-234      DR GENE3D; c07d33f20191dd3b8ef4115571fc1c87/105-234; 
#=GS D2GYE7/105-234      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda; Ailuropoda melanoleuca; 
#=GS U6DEI3/17-164       AC U6DEI3
#=GS U6DEI3/17-164       OS Neovison vison
#=GS U6DEI3/17-164       DE Nuclear receptor-interacting protein 2
#=GS U6DEI3/17-164       DR GENE3D; f9bcb80bff5ca66fe1fa29e18f2cd013/17-164; 
#=GS U6DEI3/17-164       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Mustelinae; Neovison; Neovison vison; 
#=GF TC 223.2 7.1E-70
#=GF SQ 22
Q9JHR9/88-212               -----------LQALIRGHDSSR-TSATQVPALLVNCKCQDQMLRVAVDTGTQHNQISAGCLRRLGLGKRVPKAPGGDVAPEPPTQVEQLELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKLATSLSASSL-----------LPS-------
Q9BQI9/142-275              --------------LIHGQESRRKTSRTEIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLEKRVLKASAGDLAPGPPTQVEQLELQLGQETVVCSAQVVDAESPEFCLGLQTLLSLKCCIDLEHGVLRLKAPFSELPFLPL-------
E9QAD1/109-218              ---------------IRGHDSSR-TSATQVPALLVNCKCQDQMLRVAVDTGTQHNQISAGCLRRLGLGKRVPKAPGGDVAPEPPTQVEQLELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKLA-----------------------------
A0A0N4SUN5/31-152           --------------LIRGHDSSR-TSATQVPALLVNCKCQDQMLRVAVDTGTQHNQISAGCLRRLGLGKRVPKAPGGDVAPEPPTQVEQLELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKTSPT------------------PTQVNCKRE
M3YDE5/112-251              --------SPLVQAQIHGQESRRKTSKTETLALLVNCKCRDQELRVAVDTGTHHNQISAGCLSRLGLGKKVLKAPGGGLAPGPPTQVEQLELQLGQETVACSAQVVDVESPEFCLGLQTLLSLKCCIDLDRGVLRLRAPFPELPFLPL-------
D4ABB1/89-202               ------------QALIRGHDSSR-TSATQVPALLVNCKCQDQMLRVAVDTGTQHNQISAGCLRRLGLGKRVPQAPGGDLAPESTSQVEQVELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKVGH----------------------------
M3X725/146-281              -----------AQAPIHSQESRRKTSKTQIPALLVNCKCRDQELRVAVDTGTQHNQISAGCLSRLGLGK-VLKAPGGDVAPGPPTQVEQLELQLGQETVACSAQVVDVESPEFCLGLQTLLSLKCCIDLEHGVLRLRAPFSELPFLPL-------
I3MQW6/108-246              --------SPLVQALVRGQDSKRKTSGTEIPALLVNCKCQDQLLRVAVNTGTQHNQISTGCLSRLGLGKRVLKAPGGDLAPG-PTQVEQLELQLGQEKVACSAQVVDVDSPEFCLGLQTLLSLKCCIDLERGVLRLKAPFSELPFLPL-------
L5JU81/109-249              ---------PLVQALVHGQENRKKTSETEIPALLVNCKCRDQVLRVAVDTGTHHNQISAGCLSRLGLGKRVLKAPGGDLAPGPPTQVEQLELQLGQETVACSAQVVDVESPEFCLGLQTLLSLKCCIDLEHGVLRLKAPFPELPFLPLHQ-----
H2NG46/140-275              ------------QALIHGQESRRKTSRTEIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLDKRVLKASAGDLVPGPPTQVEQLELQLGQETVVCSAQVVDVESPEFCLGLQTLLSLKCCIDLEHGVLRLKAPFSELPFLPL-------
H2Q576/141-275              -------------ALIHGQESRRKTSRTEIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLEKRVLKASAGDLSPGPPTQVEQLELQLGQETVVCSAQVVDAESPEFCLGLQTLLSLKCCIDLEHGVLRLKAPFPELPFLPL-------
A0A1D5RGW8/89-225           -----------VQALIHGQESRRRTSRTEIPALLVNCKCQDLLLRVAVDTGTQYNRISAGCLSRLGLEKKVLKASAGDLAPGPPTQVEQLELQLGQETVVCSAQVVDVESPEFCLGLQTLLSLKCCIDLERGVLRLKAPFSELPFLPL-------
A0A096N508/89-225           -----------VQALIHGQESRRRTSRTEIPALLVNCKCQDLLLRVAVDTGTQYNRISAGCLSRLGLEKKVLKASAGDLAPGPPTQVEQLELQLGQETVVCSAQVVDVESPEFCLGLQTLLSLKCCIDLERGVLRLKAPFSELPFLPL-------
A0A1A6HFK7/88-223           -----------VQTLIHDHESSK-TGGTQVPALLVNCKCQDQMLRVAVDTGTQHNQISAGCLRRLGLGKRVSKAPGGDLAPVPPSQVEQLELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKCCIDLDRGVLRLKAPFSELPFLPL-------
G3GUI5/63-173               -------------------------------------LCQDQMLRVAVDTGTQHNQISTGCLRRLGLGKRVPKAPGGDLAPGPPSQVEELELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKCCIDLDRGVLRLKAPFSELPFLPL-------
G1QRD7/141-278              ------------QALTHGQESRRKTSRTEIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLEERVLKPSAGDLAPGPPTQVEQLELQLGQGTVVCSAQVMDVESPEFCLGLQTLLSLKCCIDLEHGVLRLKAPFSELPFLPSYQ-----
F6SX65/125-260              ------------QALIHGQESRRRTSRTEIPALLVNCKCQDLLLRVAVDTGTQYNRISAGCLSRLGLEKKVLKASAGDLAPGPPTQVEQLELQLGQETVVCSAQVVDVESPEFCLGLQTLLSLKCCIDLERGVLRLKAPFSELPFLPL-------
A0A0D9RFT7/137-272          ------------QALIHGQESRRKTSRTEIPALLVNCKCQDLLLRVAVDTGTQYNRISAGCLSRLGLEKKVLKASAGDLAPGPPNQVEQLELQLGQETVVCSAQVVDVESPEFCLGLQTLLSLKCCIDLERGVLRLKAPFSELPFLPL-------
G3SFC6/141-275              -------------ALIHGQESRRKTSKTEIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLEKRVLKASAGDLAPGPPTQVEQLELQLGQETVVCSAQVVDAESPEFCLGLQTLLSLKCCIDLEHGVLRLKAPFSELPFLPL-------
D3ZPL0/89-223               ------------QALIRGHDSSR-TSATQVPALLVNCKCQDQMLRVAVDTGTQHNQISAGCLRRLGLGKRVPQAPGGDLAPESTSQVEQVELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKCCIDLDRGVLRLKAPFSELPFLPL-------
D2GYE7/105-234              ------------------QEGRRKTSKMEVPALLVNCKCRDQELRVAVDTGTHHNQISAGCLSRLGLGKKVLKAPGGGLAPGPPTQVEQLELQLGQETVACSAQVVDVESPEFCLGLQTLLSLKCCIDLERGVLRLRAPFPELPFLPL-------
U6DEI3/17-164               NQSRLQGESPLVQAQIHGQESRRKTSKTETPALLVNCKCRDQELRVAVDTGTHHNQISAGCLSRLGLGKKVLKAPGGGLAPGPPTQVEQLELQLGQETVACSAQVVDVESPEFCLGLQTLLSLKCCIDLDRGVLRLRAPFPELPFLPL-------
#=GC scorecons              00000000000034465656647277375577777777979749999989997796997999599996869578669778967769998799699988969999989779999999999999995655533445443444344445640000000
#=GC scorecons_70           ____________________*_*_**_*__************_*******************_********_*********_******************************************______________________*________
#=GC scorecons_80           ________________________**____************_************_******_****_*_*_**__**_**__*_*******_******_********_***************_______________________________
#=GC scorecons_90           ______________________________________*_*__*********__*_**_***_****_*_*__*__*__**____****_**_******_*******__***************_______________________________
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