# STOCKHOLM 1.0
#=GF ID 2.40.70.10/FF/22963
#=GF DE Retrotransposon-like protein 1
#=GF AC 2.40.70.10/FF/22963
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 45.154
#=GS B4YB44/672-783      AC B4YB44
#=GS B4YB44/672-783      OS Mus musculus
#=GS B4YB44/672-783      DE Retrotransposon-like 1
#=GS B4YB44/672-783      DR GENE3D; 561bd3269a48f7c909ba014229535e7d/672-783; 
#=GS B4YB44/672-783      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q7M732/672-783      AC Q7M732
#=GS Q7M732/672-783      OS Mus musculus
#=GS Q7M732/672-783      DE Retrotransposon-like protein 1
#=GS Q7M732/672-783      DR GENE3D; 561bd3269a48f7c909ba014229535e7d/672-783; 
#=GS Q7M732/672-783      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A6NKG5/411-530      AC A6NKG5
#=GS A6NKG5/411-530      OS Homo sapiens
#=GS A6NKG5/411-530      DE Retrotransposon-like protein 1
#=GS A6NKG5/411-530      DR GENE3D; f21e4c956d4988d58d3d5f82a904905f/411-530; 
#=GS A6NKG5/411-530      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS H0XT59/412-531      AC H0XT59
#=GS H0XT59/412-531      OS Otolemur garnettii
#=GS H0XT59/412-531      DE Uncharacterized protein
#=GS H0XT59/412-531      DR GENE3D; 01d4d255e1cc02202385af6f0802c216/412-531; 
#=GS H0XT59/412-531      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur; Otolemur garnettii; 
#=GS M3Z636/397-515      AC M3Z636
#=GS M3Z636/397-515      OS Mustela putorius furo
#=GS M3Z636/397-515      DE Uncharacterized protein
#=GS M3Z636/397-515      DR GENE3D; 2ff3a68ee1a592681e8307b3b2cbe02c/397-515; 
#=GS M3Z636/397-515      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Mustelinae; Mustela; Mustela putorius; Mustela putorius furo; 
#=GS G1SBN9/412-531      AC G1SBN9
#=GS G1SBN9/412-531      OS Nomascus leucogenys
#=GS G1SBN9/412-531      DE Uncharacterized protein
#=GS G1SBN9/412-531      DR GENE3D; 3625f1c215783e5ce898fa2ad0a5620a/412-531; 
#=GS G1SBN9/412-531      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS Q52QI2/398-516      AC Q52QI2
#=GS Q52QI2/398-516      OS Bos taurus
#=GS Q52QI2/398-516      DE Retrotransposon-like protein 1
#=GS Q52QI2/398-516      DR GENE3D; 4067d81bf350a3dce975991b226622ae/398-516; 
#=GS Q52QI2/398-516      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS B9A0N2/46-164       AC B9A0N2
#=GS B9A0N2/46-164       OS Sus scrofa
#=GS B9A0N2/46-164       DE Retrotransposon-like 1
#=GS B9A0N2/46-164       DR GENE3D; 426381b77dc62344317324abe8fbb411/46-164; 
#=GS B9A0N2/46-164       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS I3L680/43-161       AC I3L680
#=GS I3L680/43-161       OS Sus scrofa
#=GS I3L680/43-161       DE Uncharacterized protein
#=GS I3L680/43-161       DR GENE3D; 76e428b0d044f7e487510db32c0fd7e7/43-161; 
#=GS I3L680/43-161       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS F1P8S5/398-516      AC F1P8S5
#=GS F1P8S5/398-516      OS Canis lupus familiaris
#=GS F1P8S5/398-516      DE Uncharacterized protein
#=GS F1P8S5/398-516      DR GENE3D; a31dc469a68eab8b86283d9e44859598/398-516; 
#=GS F1P8S5/398-516      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS A0A096MLL6/412-531  AC A0A096MLL6
#=GS A0A096MLL6/412-531  OS Papio anubis
#=GS A0A096MLL6/412-531  DE Uncharacterized protein
#=GS A0A096MLL6/412-531  DR GENE3D; b91365452dfbf3283d3b5dcee5a9af86/412-531; 
#=GS A0A096MLL6/412-531  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS F7G2J3/412-531      AC F7G2J3
#=GS F7G2J3/412-531      OS Macaca mulatta
#=GS F7G2J3/412-531      DE Uncharacterized protein
#=GS F7G2J3/412-531      DR GENE3D; c02186f1626a40fa0bd90d249c4ce791/412-531; 
#=GS F7G2J3/412-531      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS I3ND16/414-532      AC I3ND16
#=GS I3ND16/414-532      OS Ictidomys tridecemlineatus
#=GS I3ND16/414-532      DE Uncharacterized protein
#=GS I3ND16/414-532      DR GENE3D; c3ffa530d1f3e68d229df10466dcd525/414-532; 
#=GS I3ND16/414-532      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys; Ictidomys tridecemlineatus; 
#=GS W5PWQ6/399-517      AC W5PWQ6
#=GS W5PWQ6/399-517      OS Ovis aries
#=GS W5PWQ6/399-517      DE Uncharacterized protein
#=GS W5PWQ6/399-517      DR GENE3D; cba3a017ffb42d9d5ef8dcd4985f20d7/399-517; 
#=GS W5PWQ6/399-517      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS B4ZYI5/403-521      AC B4ZYI5
#=GS B4ZYI5/403-521      OS Sus scrofa
#=GS B4ZYI5/403-521      DE Retrotransposon-like 1
#=GS B4ZYI5/403-521      DR GENE3D; d3749f7a4a9ac7c8700990c4d93b9270/403-521; 
#=GS B4ZYI5/403-521      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS A0A0D9SDZ3/412-531  AC A0A0D9SDZ3
#=GS A0A0D9SDZ3/412-531  OS Chlorocebus sabaeus
#=GS A0A0D9SDZ3/412-531  DE Uncharacterized protein
#=GS A0A0D9SDZ3/412-531  DR GENE3D; d536f176a9eedfdeb0183bfba4ff8e2e/412-531; 
#=GS A0A0D9SDZ3/412-531  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS G1LX15/377-495      AC G1LX15
#=GS G1LX15/377-495      OS Ailuropoda melanoleuca
#=GS G1LX15/377-495      DE Uncharacterized protein
#=GS G1LX15/377-495      DR GENE3D; f91d1653bee09dcbb8d5167e4e6db968/377-495; 
#=GS G1LX15/377-495      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda; Ailuropoda melanoleuca; 
#=GF TC 234.6 1.4E-73
#=GF SQ 17
B4YB44/672-783              -------DPYHSVAVRALVDSGAEGNYMDERFAQEHYVELYEKPYPQIIQGVDGIPIGNEPVWLCTEPLVCVHQKHYEYIEFDILPSPNFSIVLGMKWLRTHAPEVDWMRGRCTFHSPY-
Q7M732/672-783              -------DPYHSVAVRALVDSGAEGNYMDERFAQEHYVELYEKPYPQIIQGVDGIPIGNEPVWLCTEPLVCVHQKHYEYIEFDILPSPNFSIVLGMKWLRTHAPEVDWMRGRCTFHSPY-
A6NKG5/411-530              LLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYC
H0XT59/412-531              LLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQSIQTVDGSLIGDEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYC
M3Z636/397-515              -LLLVRVNPYHSVAVQALVDSGAGGSFMDEKFAQEHYVELYEKPHPKMVQGVDGSLIGDEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVILGIDWLRLHTPEVDWIQGRCTFHSPYC
G1SBN9/412-531              LLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYC
Q52QI2/398-516              -LLLVRVNPYHSVAVQALVDSGATSNYMDEGFAQEHYVELYQKPYAESVQTADGSLVGNEPVWLYTEPLVCLHQNHQESLEFDIVASSKFSVVLGIKWLQLHAPEIDWVKGRCTFHSPYC
B9A0N2/46-164               -LLLVRVNPYHSVAVRALVDSGASANFMDERFAQEHYVQLFEKPYPQQVQTVDGSLIGNEPVWLYTEALVCIHQNHQETIEFDIVPSPNFSVILGINWLRVHAPEVDWVKGRCTFHSPYC
I3L680/43-161               -LLLVRVNPYHSVAVRALVDSGASANFMDERFAQEHYVQLFEKPYPQQVQTVDGSLIGNEPVWLYTEALVCIHQNHQETIEFDIVPSPNFSVILGINWLRVHAPEVDWVKGRCTFHSPYC
F1P8S5/398-516              -LLLVRVNPYHSVAVQALVDSGAGGNFMDERFAQEHYVELYEKPYPQMVQGVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVILGIKWLRIHTPEVDWVRGRCTFHSPYC
A0A096MLL6/412-531          LLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPIWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYC
F7G2J3/412-531              LLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPIWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYC
I3ND16/414-532              -LLLVRVNPYHSVAVQALVDSGAEGNFMDEKFAQEHYVELYEKPYPQSIQTVDGSLIGNEPIWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGINWLRIHAPEVDWIKGRCTFHSPYC
W5PWQ6/399-517              -LLLVRVNPYHSVAVQALVDSGATSNYMDEGFAQEHYVELYQKPYAELVQTADGSLVGNEPVWLYTEPLVCLHQNHQESLEFDIVASSKFSVILGIKWLQLHAPDIDWVKGRCTFHSPYC
B4ZYI5/403-521              -LLLVRVNPYHSVAVRALVDSGASANFMDERFAQEHYVQLFEKPYPQQVQTVDGSLIGNEPVWLYTEALVCIHQNHQETIEFDIVPSPNFSVILGINWLRVHAPEVDWVKGRCTFHSPYC
A0A0D9SDZ3/412-531          LLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPIWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYC
G1LX15/377-495              -LLLVRVNPYHSVAVQALVDSGAGGNFMDERFAQEHYVELYEKPYPQMVQGVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVILGINWLRIHTPEVDWLKGRCTFHSPYC
#=GC scorecons              055455579999999699999994687999599999997987998773795799667989979979979996997969579999779779977997599759798799579999999995
#=GC scorecons_70           _______****************__*****_****************_**_***************************_*****************_***_*******_**********_
#=GC scorecons_80           _______********_*******__*****_***************__**_***__***************_**_*_*_*************_***_***_*******__*********_
#=GC scorecons_90           ________*******_*******__*_***_*******_**_***____*__**___*_**_**_**_***_**_*_*__****__*__**__**__**__*_**_**__*********_
//