# STOCKHOLM 1.0
#=GF ID 2.40.70.10/FF/22835
#=GF DE Pol polyprotein
#=GF AC 2.40.70.10/FF/22835
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 17.976
#=GS 1b11A00/1-113  AC P16088
#=GS 1b11A00/1-113  OS Feline immunodeficiency virus (isolate Petaluma)
#=GS 1b11A00/1-113  DE Pol polyprotein
#=GS 1b11A00/1-113  DR CATH; 1b11; A:4-116; 
#=GS 1b11A00/1-113  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS 1b11A00/1-113  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS 2fivA00/1-116  AC P16088
#=GS 2fivA00/1-116  OS Feline immunodeficiency virus (isolate Petaluma)
#=GS 2fivA00/1-116  DE Pol polyprotein
#=GS 2fivA00/1-116  DR CATH; 2fiv; A:4-116; 
#=GS 2fivA00/1-116  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS 2fivA00/1-116  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS 5fivA00/1-113  AC P16088
#=GS 5fivA00/1-113  OS Feline immunodeficiency virus (isolate Petaluma)
#=GS 5fivA00/1-113  DE Pol polyprotein
#=GS 5fivA00/1-113  DR CATH; 5fiv; A:5-116; 
#=GS 5fivA00/1-113  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS 5fivA00/1-113  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS 6fivA00/1-113  AC P16088
#=GS 6fivA00/1-113  OS Feline immunodeficiency virus (isolate Petaluma)
#=GS 6fivA00/1-113  DE Pol polyprotein
#=GS 6fivA00/1-113  DR CATH; 6fiv; A:5-116; 
#=GS 6fivA00/1-113  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS 6fivA00/1-113  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS 1fivA00/1-113  AC P16088
#=GS 1fivA00/1-113  OS Feline immunodeficiency virus (isolate Petaluma)
#=GS 1fivA00/1-113  DE Pol polyprotein
#=GS 1fivA00/1-113  DR CATH; 1fiv; A:4-116; 
#=GS 1fivA00/1-113  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS 1fivA00/1-113  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS 2fivB00/1-116  AC P16088
#=GS 2fivB00/1-116  OS Feline immunodeficiency virus (isolate Petaluma)
#=GS 2fivB00/1-116  DE Pol polyprotein
#=GS 2fivB00/1-116  DR CATH; 2fiv; B:4-116; 
#=GS 2fivB00/1-116  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS 2fivB00/1-116  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS P31822/41-153  AC P31822
#=GS P31822/41-153  OS Feline immunodeficiency virus (isolate TM2)
#=GS P31822/41-153  DE Pol polyprotein
#=GS P31822/41-153  DR GENE3D; 11bcf28f263e3517dbd818925cd6a65b/41-153; 
#=GS P31822/41-153  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS P31822/41-153  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS P19028/42-154  AC P19028
#=GS P19028/42-154  OS Feline immunodeficiency virus (isolate San Diego)
#=GS P19028/42-154  DE Pol polyprotein
#=GS P19028/42-154  DR GENE3D; 4b04c898d720da6cb7dfe89d4a94845b/42-154; 
#=GS P19028/42-154  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS P19028/42-154  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS P16088/42-154  AC P16088
#=GS P16088/42-154  OS Feline immunodeficiency virus (isolate Petaluma)
#=GS P16088/42-154  DE Pol polyprotein
#=GS P16088/42-154  DR GENE3D; b40b4dd53eb611f030f9814bdba12af5/42-154; 
#=GS P16088/42-154  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS P16088/42-154  DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; 
#=GS 4fivA00/1-113  AC Q66972
#=GS 4fivA00/1-113  OS Feline immunodeficiency virus
#=GS 4fivA00/1-113  DE POL protein
#=GS 4fivA00/1-113  DR CATH; 4fiv; A:4-116; 
#=GS 4fivA00/1-113  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS Q8Q5Q7/48-160  AC Q8Q5Q7
#=GS Q8Q5Q7/48-160  OS Feline immunodeficiency virus
#=GS Q8Q5Q7/48-160  DE Pol polyprotein
#=GS Q8Q5Q7/48-160  DR GENE3D; 2cc89315aaca404a402b5b8d87ac767c/48-160; 
#=GS Q8Q5Q7/48-160  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GS Q66972/42-154  AC Q66972
#=GS Q66972/42-154  OS Feline immunodeficiency virus
#=GS Q66972/42-154  DE POL protein
#=GS Q66972/42-154  DR GENE3D; 623d3486717974216d176c146a2cf3b9/42-154; 
#=GS Q66972/42-154  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; 
#=GF TC 248.6 2.0E-78
#=GF SQ 12
1b11A00/1-113          ---VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
2fivA00/1-116          YNKVGTTTTLEKRPEILIFVNGYPIKFLLNTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
5fivA00/1-113          ---VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGIGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
6fivA00/1-113          ---VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIVPLLGRDNMIKFNIRLVM
1fivA00/1-113          ---VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
2fivB00/1-116          YNKVGTTTTLEKRPEILIFVNGYPIKFLLNTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
P31822/41-153          ---IGTTTTLERRPEIQIFVNGHPIKFLLDTGADITILNRKDFQIGNSIENGKQNMIGVGGGKRGTNYINVHLEIRDENYRMQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
P19028/42-154          ---VGTTTSLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
P16088/42-154          ---VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
4fivA00/1-113          ---VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
Q8Q5Q7/48-160          ---VGTTTTLDRRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGKQNMIGVGGGKRGTNYCNVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMVKFNIRLVM
Q66972/42-154          ---VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM
#=GC scorecons         00079999898799996999997999999699999999997999769999997999998999999999799999999999769999999999999999799999999899999999
#=GC scorecons_70      ___*****************************************************************************************************************
#=GC scorecons_80      ___*************_************_***************_***********************************_**********************************
#=GC scorecons_90      ____*******_****_*****_******_**********_***__******_***************_***********__****************_*****************
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