# STOCKHOLM 1.0 #=GF ID 2.40.10.10/FF/20008 #=GF DE Genome polyprotein #=GF AC 2.40.10.10/FF/20008 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 19.187 #=GS 1havA01/1-100_204-215 AC P08617 #=GS 1havA01/1-100_204-215 OS Human hepatitis A virus Hu/Australia/HM175/1976 #=GS 1havA01/1-100_204-215 DE Genome polyprotein #=GS 1havA01/1-100_204-215 DR CATH; 1hav; A:1-100; A:204-215; #=GS 1havA01/1-100_204-215 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS 1havA01/1-100_204-215 DR GO; GO:0039546; #=GS 1havA01/1-100_204-215 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS 1havB01/1-100_204-213 AC P08617 #=GS 1havB01/1-100_204-213 OS Human hepatitis A virus Hu/Australia/HM175/1976 #=GS 1havB01/1-100_204-213 DE Genome polyprotein #=GS 1havB01/1-100_204-213 DR CATH; 1hav; B:1-100; B:204-213; #=GS 1havB01/1-100_204-213 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS 1havB01/1-100_204-213 DR GO; GO:0039546; #=GS 1havB01/1-100_204-213 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS 2a4oA01/1-100_204-219 AC P13901 #=GS 2a4oA01/1-100_204-219 OS Human hepatitis A virus Hu/Northern Africa/MBB/1978 #=GS 2a4oA01/1-100_204-219 DE Genome polyprotein #=GS 2a4oA01/1-100_204-219 DR CATH; 2a4o; A:1-100; A:204-212; #=GS 2a4oA01/1-100_204-219 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS 2a4oA01/1-100_204-219 DR GO; GO:0039546; #=GS 2a4oA01/1-100_204-219 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS 2cxvA01/1-100_204-219 AC P13901 #=GS 2cxvA01/1-100_204-219 OS Human hepatitis A virus Hu/Northern Africa/MBB/1978 #=GS 2cxvA01/1-100_204-219 DE Genome polyprotein #=GS 2cxvA01/1-100_204-219 DR CATH; 2cxv; A:1-100; A:204-212; #=GS 2cxvA01/1-100_204-219 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS 2cxvA01/1-100_204-219 DR GO; GO:0039546; #=GS 2cxvA01/1-100_204-219 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS 2h6mA01/1-100_204-212 AC P08617 #=GS 2h6mA01/1-100_204-212 OS Human hepatitis A virus Hu/Australia/HM175/1976 #=GS 2h6mA01/1-100_204-212 DE Genome polyprotein #=GS 2h6mA01/1-100_204-212 DR CATH; 2h6m; A:1-100; A:204-212; #=GS 2h6mA01/1-100_204-212 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS 2h6mA01/1-100_204-212 DR GO; GO:0039546; #=GS 2h6mA01/1-100_204-212 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS 2h9hA01/1-100_204-212 AC P08617 #=GS 2h9hA01/1-100_204-212 OS Human hepatitis A virus Hu/Australia/HM175/1976 #=GS 2h9hA01/1-100_204-212 DE Genome polyprotein #=GS 2h9hA01/1-100_204-212 DR CATH; 2h9h; A:1-100; A:204-212; #=GS 2h9hA01/1-100_204-212 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS 2h9hA01/1-100_204-212 DR GO; GO:0039546; #=GS 2h9hA01/1-100_204-212 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS 2halA01/1-100_204-212 AC P08617 #=GS 2halA01/1-100_204-212 OS Human hepatitis A virus Hu/Australia/HM175/1976 #=GS 2halA01/1-100_204-212 DE Genome polyprotein #=GS 2halA01/1-100_204-212 DR CATH; 2hal; A:1-100; A:204-212; #=GS 2halA01/1-100_204-212 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS 2halA01/1-100_204-212 DR GO; GO:0039546; #=GS 2halA01/1-100_204-212 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS P08617/1522-1619_1723-1729 AC P08617 #=GS P08617/1522-1619_1723-1729 OS Human hepatitis A virus Hu/Australia/HM175/1976 #=GS P08617/1522-1619_1723-1729 DE Genome polyprotein #=GS P08617/1522-1619_1723-1729 DR GENE3D; 0115f5267829b8de3efcbef105e55a25/1522-1619_1723-1729; #=GS P08617/1522-1619_1723-1729 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS P08617/1522-1619_1723-1729 DR GO; GO:0039546; #=GS P08617/1522-1619_1723-1729 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS Q5Y944/1520-1617_1721-1727 AC Q5Y944 #=GS Q5Y944/1520-1617_1721-1727 OS Human hepatitis A virus Hu/France/CF-53/1979 #=GS Q5Y944/1520-1617_1721-1727 DE Genome polyprotein #=GS Q5Y944/1520-1617_1721-1727 DR GENE3D; 014178f8766eb353ef33d6c961366bfd/1520-1617_1721-1727; #=GS Q5Y944/1520-1617_1721-1727 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS Q5Y944/1520-1617_1721-1727 DR GO; GO:0039546; #=GS Q5Y944/1520-1617_1721-1727 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS P14553/1524-1621_1725-1731 AC P14553 #=GS P14553/1524-1621_1725-1731 OS Simian hepatitis A virus Cercopithecus/Kenya/AGM-27/1985 #=GS P14553/1524-1621_1725-1731 DE Genome polyprotein #=GS P14553/1524-1621_1725-1731 DR GENE3D; 3a1a98f73d558013c326cb5de8e6568b/1524-1621_1725-1731; #=GS P14553/1524-1621_1725-1731 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS P14553/1524-1621_1725-1731 DR GO; GO:0039546; #=GS P14553/1524-1621_1725-1731 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS Q8V0N6/1522-1619_1723-1729 AC Q8V0N6 #=GS Q8V0N6/1522-1619_1723-1729 OS Human hepatitis A virus Hu/Sierra Leone/SLF88/1988 #=GS Q8V0N6/1522-1619_1723-1729 DE Genome polyprotein #=GS Q8V0N6/1522-1619_1723-1729 DR GENE3D; 778a132f924c67e3235ffcb122d29bdc/1522-1619_1723-1729; #=GS Q8V0N6/1522-1619_1723-1729 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS Q8V0N6/1522-1619_1723-1729 DR GO; GO:0039546; #=GS Q8V0N6/1522-1619_1723-1729 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS Q67825/1522-1619_1723-1729 AC Q67825 #=GS Q67825/1522-1619_1723-1729 OS Human hepatitis A virus Hu/Germany/GBM/1976 #=GS Q67825/1522-1619_1723-1729 DE Genome polyprotein #=GS Q67825/1522-1619_1723-1729 DR GENE3D; 96b4392fc10252f9b16b48c056ec2dbb/1522-1619_1723-1729; #=GS Q67825/1522-1619_1723-1729 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS Q67825/1522-1619_1723-1729 DR GO; GO:0039546; #=GS Q67825/1522-1619_1723-1729 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS A3FMB2/1522-1619_1723-1729 AC A3FMB2 #=GS A3FMB2/1522-1619_1723-1729 OS Human hepatitis A virus Hu/China/H2/1982 #=GS A3FMB2/1522-1619_1723-1729 DE Genome polyprotein #=GS A3FMB2/1522-1619_1723-1729 DR GENE3D; ad1a732c8df1000f64e164ffc581a10f/1522-1619_1723-1729; #=GS A3FMB2/1522-1619_1723-1729 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS A3FMB2/1522-1619_1723-1729 DR GO; GO:0039546; #=GS A3FMB2/1522-1619_1723-1729 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS A5LGW7/1522-1619_1723-1729 AC A5LGW7 #=GS A5LGW7/1522-1619_1723-1729 OS Human hepatitis A virus Hu/Japan/HAJ85-1/1985 #=GS A5LGW7/1522-1619_1723-1729 DE Genome polyprotein #=GS A5LGW7/1522-1619_1723-1729 DR GENE3D; b072621c6d429f658c00c1437ab00fe5/1522-1619_1723-1729; #=GS A5LGW7/1522-1619_1723-1729 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS A5LGW7/1522-1619_1723-1729 DR GO; GO:0039546; #=GS A5LGW7/1522-1619_1723-1729 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS P13901/1522-1619_1723-1729 AC P13901 #=GS P13901/1522-1619_1723-1729 OS Human hepatitis A virus Hu/Northern Africa/MBB/1978 #=GS P13901/1522-1619_1723-1729 DE Genome polyprotein #=GS P13901/1522-1619_1723-1729 DR GENE3D; cabb87b6feabfb5ba0ecf5eaa74d8bc3/1522-1619_1723-1729; #=GS P13901/1522-1619_1723-1729 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS P13901/1522-1619_1723-1729 DR GO; GO:0039546; #=GS P13901/1522-1619_1723-1729 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS P06441/1522-1619_1723-1729 AC P06441 #=GS P06441/1522-1619_1723-1729 OS Human hepatitis A virus Hu/Los Angelos/LA/1975 #=GS P06441/1522-1619_1723-1729 DE Genome polyprotein #=GS P06441/1522-1619_1723-1729 DR GENE3D; ff463918cc23f8bbd0ac1937491598ca/1522-1619_1723-1729; #=GS P06441/1522-1619_1723-1729 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS P06441/1522-1619_1723-1729 DR GO; GO:0039546; #=GS P06441/1522-1619_1723-1729 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS Q05794/1356-1453_1557-1563 AC Q05794 #=GS Q05794/1356-1453_1557-1563 OS Human hepatitis A virus Hu/Arizona/HAS-15/1979 #=GS Q05794/1356-1453_1557-1563 DE Genome polyprotein #=GS Q05794/1356-1453_1557-1563 DR GENE3D; 2f9d32bffd1d38e85d40057ccec0dc77/1356-1453_1557-1563; #=GS Q05794/1356-1453_1557-1563 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS Q05794/1356-1453_1557-1563 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS Q9DWR1/1522-1619_1723-1729 AC Q9DWR1 #=GS Q9DWR1/1522-1619_1723-1729 OS Human hepatitis A virus Hu/Norway/NOR-21/1998 #=GS Q9DWR1/1522-1619_1723-1729 DE Genome polyprotein #=GS Q9DWR1/1522-1619_1723-1729 DR GENE3D; 455438899782687e3eab06073e418b83/1522-1619_1723-1729; #=GS Q9DWR1/1522-1619_1723-1729 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS Q9DWR1/1522-1619_1723-1729 DR EC; 2.7.7.48; 3.4.22.28; 3.6.1.15; #=GS Q5Y945/113-215 AC Q5Y945 #=GS Q5Y945/113-215 OS Hepatovirus A #=GS Q5Y945/113-215 DE Polyprotein #=GS Q5Y945/113-215 DR GENE3D; 7592e5703351f30843df8bff4a4d1a35/113-215; #=GS Q5Y945/113-215 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS Q5Y947/113-215 AC Q5Y947 #=GS Q5Y947/113-215 OS Hepatovirus A #=GS Q5Y947/113-215 DE Polyprotein #=GS Q5Y947/113-215 DR GENE3D; 7592e5703351f30843df8bff4a4d1a35/113-215; #=GS Q5Y947/113-215 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS Q5Y946/113-215 AC Q5Y946 #=GS Q5Y946/113-215 OS Hepatovirus A #=GS Q5Y946/113-215 DE Polyprotein #=GS Q5Y946/113-215 DR GENE3D; 7592e5703351f30843df8bff4a4d1a35/113-215; #=GS Q5Y946/113-215 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GS Q67813/530-627_731-737 AC Q67813 #=GS Q67813/530-627_731-737 OS Hepatovirus A #=GS Q67813/530-627_731-737 DE Genome polyprotein #=GS Q67813/530-627_731-737 DR GENE3D; 85b9242d8e5ca5b88330e61b7d154c38/530-627_731-737; #=GS Q67813/530-627_731-737 DR ORG; Viruses; Picornavirales; Picornaviridae; Hepatovirus; Hepatovirus A; #=GF TC 229.6 2.6E-72 #=GF SQ 22 1havA01/1-100_204-215 STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQNIDKK---- 1havB01/1-100_204-213 STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQNID------ 2a4oA01/1-100_204-219 STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQNIDKKIESQ 2cxvA01/1-100_204-219 STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQNIDKKIESQ 2h6mA01/1-100_204-212 STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQNI------- 2h9hA01/1-100_204-212 STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQNI------- 2halA01/1-100_204-212 STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQNI------- P08617/1522-1619_1723-1729 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- Q5Y944/1520-1617_1721-1727 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- P14553/1524-1621_1725-1731 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGIKDDWLLVPSHAYKFEKDYQMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- Q8V0N6/1522-1619_1723-1729 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPNFRDITVTQEMFQ--------- Q67825/1522-1619_1723-1729 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- A3FMB2/1522-1619_1723-1729 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- A5LGW7/1522-1619_1723-1729 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGIKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- P13901/1522-1619_1723-1729 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- P06441/1522-1619_1723-1729 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- Q05794/1356-1453_1557-1563 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITITQEMFQ--------- Q9DWR1/1522-1619_1723-1729 --LEIAGLVRKNLVQFGVGEKNGCVRWVMNALGIKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- Q5Y945/113-215 STLEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDIT---EHF---------- Q5Y947/113-215 STLEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDIT---EHF---------- Q5Y946/113-215 STLEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDIT---EHF---------- Q67813/530-627_731-737 --LEIAGLVRKNLVQFGVEEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITVTQEMFQ--------- #=GC scorecons 33999999999999999989999699999999989999999999999999998999999999999999999999999999999999999999998999995559695110000000 #=GC scorecons_70 __*********************_****************************************************************************___***__________ #=GC scorecons_80 __*********************_****************************************************************************___*_*__________ #=GC scorecons_90 __*********************_****************************************************************************___*_*__________ //