# STOCKHOLM 1.0
#=GF ID 2.30.30.10/FF/198
#=GF DE Probable Pol polyprotein
#=GF AC 2.30.30.10/FF/198
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 40.782
#=GS P12894/722-775   AC P12894
#=GS P12894/722-775   OS Mouse intracisternal A-particle MIAIL3
#=GS P12894/722-775   DE Probable Pol polyprotein
#=GS P12894/722-775   DR GENE3D; 4dc8c3e8ea7df6b0e5ba63034cae171b/722-775; 
#=GS P12894/722-775   DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Mouse Intracisternal A-particle; 
#=GS P12894/722-775   DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q61706/369-422   AC Q61706
#=GS Q61706/369-422   OS Mus musculus
#=GS Q61706/369-422   DE RNA for type IIB intracisternal A-particle (IAP) element encoding integrase, clone 106
#=GS Q61706/369-422   DR GENE3D; 33e2e2303ae02d9d6486d3f2f3946ff2/369-422; 
#=GS Q61706/369-422   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q7TQ37/713-766   AC Q7TQ37
#=GS Q7TQ37/713-766   OS Mus musculus
#=GS Q7TQ37/713-766   DE Pol protein
#=GS Q7TQ37/713-766   DR GENE3D; 54579fd877e486ea479c0ab6d9533f35/713-766; 
#=GS Q7TQ37/713-766   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q1W5W7/975-1028  AC Q1W5W7
#=GS Q1W5W7/975-1028  OS Mus musculus
#=GS Q1W5W7/975-1028  DE Putative gag-pol protein
#=GS Q1W5W7/975-1028  DR GENE3D; 897f83e2a77ee4d1b7269c1fa083d800/975-1028; 
#=GS Q1W5W7/975-1028  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS P04026/754-807   AC P04026
#=GS P04026/754-807   OS Golden hamster intracisternal A-particle H18
#=GS P04026/754-807   DE Putative Pol polyprotein
#=GS P04026/754-807   DR GENE3D; 0091df83cbba4f7c4be17a9221cc318d/754-807; 
#=GS P04026/754-807   DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Golden hamster intracisternal A-particle H18; 
#=GS P04026/754-807   DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS F9W6J4/825-878   AC F9W6J4
#=GS F9W6J4/825-878   OS Trypanosoma congolense IL3000
#=GS F9W6J4/825-878   DE WGS project CAEQ00000000 data, annotated contig 1482
#=GS F9W6J4/825-878   DR GENE3D; fff656ecb55e24fe9e76865987637fef/825-878; 
#=GS F9W6J4/825-878   DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense; 
#=GS A0A0E9CRW7/1-49  AC A0A0E9CRW7
#=GS A0A0E9CRW7/1-49  OS Chlamydia trachomatis
#=GS A0A0E9CRW7/1-49  DE Integrase DNA binding domain
#=GS A0A0E9CRW7/1-49  DR GENE3D; 0676c2cc24463bcb54e56502f75cbd1a/1-49; 
#=GS A0A0E9CRW7/1-49  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GF TC 128.1 2.0E-41
#=GF SQ 7
P12894/722-775           -PDRPNEMVKWKNVLDNKWYGPDPILIRSRGAICVFPQNEDNPFWVPERLTRKIQ-
Q61706/369-422           -PDRPNEMVKWKNVLDNKWYGPDPILIRSRGAVCVFPQNEDNPFWIPERLTRKIQ-
Q7TQ37/713-766           -PDRPNEMVKWKNVLDNKWYGPDPILIRSRGAICVFPQNEDNPFWVPERLTRKIQ-
Q1W5W7/975-1028          -PDRPNEMVKWKNVLDNKWYGPDPILIRSRGAICVFPQNEDNPFWVPERLTRKIQ-
P04026/754-807           EPDRPKEMVKWKDVLTDLWKGPDPILIRSRGAVCVFPQEEENPLWIPERLTRRA--
F9W6J4/825-878           -PDRPNEMVKWKNVLDNKWYGPDPILIRSRGAVCVFPQNEDNPFWIPERLTRKIQ-
A0A0E9CRW7/1-49          -------MVKWKNVLDNKWYGPDPILIRSRGAICVFPQGEENPLWVPTRLTRTVKE
#=GC scorecons           04444249999969956595999999999999699999496996969599994530
#=GC scorecons_70        _______********_*_*_******************_****_***_****____
#=GC scorecons_80        _______*****_**___*_************_*****_*_**_*_*_****____
#=GC scorecons_90        _______*****_**___*_************_*****_*_**_*_*_****____
//