# STOCKHOLM 1.0
#=GF ID 2.130.10.10/FF/16741
#=GF DE Semaphorin-like protein A39
#=GF AC 2.130.10.10/FF/16741
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 53.343
#=GS 3nvnA00/1-389      AC Q8JL80
#=GS 3nvnA00/1-389      OS Ectromelia virus Moscow
#=GS 3nvnA00/1-389      DE Semaphorin-like protein 139
#=GS 3nvnA00/1-389      DR CATH; 3nvn; A:15-397; 
#=GS 3nvnA00/1-389      DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Ectromelia virus; 
#=GS 3nvnA00/1-389      DR GO; GO:0005515; 
#=GS 3nvxA00/1-383      AC P21062
#=GS 3nvxA00/1-383      OS Vaccinia virus Copenhagen
#=GS 3nvxA00/1-383      DE Semaphorin-like protein A39
#=GS 3nvxA00/1-383      DR CATH; 3nvx; A:12-394; 
#=GS 3nvxA00/1-383      DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Vaccinia virus; 
#=GS 3nvxB00/1-383      AC P21062
#=GS 3nvxB00/1-383      OS Vaccinia virus Copenhagen
#=GS 3nvxB00/1-383      DE Semaphorin-like protein A39
#=GS 3nvxB00/1-383      DR CATH; 3nvx; B:13-393; 
#=GS 3nvxB00/1-383      DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Vaccinia virus; 
#=GS Q8JL80/12-399      AC Q8JL80
#=GS Q8JL80/12-399      OS Ectromelia virus Moscow
#=GS Q8JL80/12-399      DE Semaphorin-like protein 139
#=GS Q8JL80/12-399      DR GENE3D; 548cb489790d93644e60c5c80dabcec8/12-399; 
#=GS Q8JL80/12-399      DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Ectromelia virus; 
#=GS Q8JL80/12-399      DR GO; GO:0005515; 
#=GS I0AZL9/12-399      AC I0AZL9
#=GS I0AZL9/12-399      OS Ectromelia virus ERPV
#=GS I0AZL9/12-399      DE Semaphorin
#=GS I0AZL9/12-399      DR GENE3D; 548cb489790d93644e60c5c80dabcec8/12-399; 
#=GS I0AZL9/12-399      DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Ectromelia virus; 
#=GS A0A075INQ3/12-399  AC A0A075INQ3
#=GS A0A075INQ3/12-399  OS Ectromelia virus Naval
#=GS A0A075INQ3/12-399  DE EVN161
#=GS A0A075INQ3/12-399  DR GENE3D; 548cb489790d93644e60c5c80dabcec8/12-399; 
#=GS A0A075INQ3/12-399  DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Ectromelia virus; 
#=GS A0A0G3FXU6/14-390  AC A0A0G3FXU6
#=GS A0A0G3FXU6/14-390  OS Raccoonpox virus
#=GS A0A0G3FXU6/14-390  DE Semaphorin
#=GS A0A0G3FXU6/14-390  DR GENE3D; 638678f1455eeb2a9e68a952db1375d9/14-390; 
#=GS A0A0G3FXU6/14-390  DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Raccoonpox virus; 
#=GS P21062/12-403      AC P21062
#=GS P21062/12-403      OS Vaccinia virus Copenhagen
#=GS P21062/12-403      DE Semaphorin-like protein A39
#=GS P21062/12-403      DR GENE3D; 8c602d922d75c324b0c75bbd0e336149/12-403; 
#=GS P21062/12-403      DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Vaccinia virus; 
#=GS A0A1C9KBV9/12-388  AC A0A1C9KBV9
#=GS A0A1C9KBV9/12-388  OS Skunkpox virus
#=GS A0A1C9KBV9/12-388  DE Semaphorin
#=GS A0A1C9KBV9/12-388  DR GENE3D; 95f052c1ff12d1d58ad55cf9a7dd26fc/12-388; 
#=GS A0A1C9KBV9/12-388  DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Skunkpox virus; 
#=GS Q0GNS1/12-325      AC Q0GNS1
#=GS Q0GNS1/12-325      OS Horsepox virus
#=GS Q0GNS1/12-325      DE HSPV161
#=GS Q0GNS1/12-325      DR GENE3D; dfb2a8297b9f69c1eaa64394a993d9e1/12-325; 
#=GS Q0GNS1/12-325      DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Vaccinia virus; 
#=GS P24764/50-291      AC P24764
#=GS P24764/50-291      OS Vaccinia virus WR
#=GS P24764/50-291      DE Semaphorin-like protein A39
#=GS P24764/50-291      DR GENE3D; e9b28c562fe8151922f94da6e00c0a2e/50-291; 
#=GS P24764/50-291      DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Vaccinia virus; 
#=GS A0A1C9KCJ0/12-386  AC A0A1C9KCJ0
#=GS A0A1C9KCJ0/12-386  OS Volepox virus
#=GS A0A1C9KCJ0/12-386  DE Semaphorin
#=GS A0A1C9KCJ0/12-386  DR GENE3D; f7d1243cacc3706d64ed90c98ac09d2c/12-386; 
#=GS A0A1C9KCJ0/12-386  DR ORG; Viruses; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Volepox virus; 
#=GF TC 582.4 8.5E-179
#=GF SQ 12
3nvnA00/1-389              PGTSIEWHKFETSEEIISTYLIDDVLYTGVN-GAVYTFSNNELNKTGLT-NNNNYITTSIKVE----DT-LVCGTNNGNPKCWKIDGSEDPKYRGRGYAPYQNSKVTIISHNECVLSDINISKEGIKRWRRFDGPCGYDLYTADNVIPKDGVRGAFVDKDGTYDKVYILFTDTIDTK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSKAIKTDNDTILYVFFDSPYSKSALCTYSMNAIKHSFSTSKLGGYTKQLPSPAPGICLPAGKVVPHTTFDIIEQYNELDDIIKPLS-QPIFEGPSGVKWFDIKEKENEHREYRIYFIKENTIYSFDTKSKQTRSAQV-DARLFSVMVTSKPLFIADIGIGVGIPRMKKILKM
3nvxA00/1-383              ---SIEWHKFETSEEIISTYLLDDVLYTGVN-GAVYTFSNNKLNKTGLT--NNNYITTSIKVEDADKDT-LVCGTNNGNPKCWKIDGSDDPKHRGRGYAPYQNSKVTIISYNECVLSDINISKEGIKRWRRFDGPCGYDLYTADNVIPKDGLRGAFVDKDGTYDKVYILFTDTIGSK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSRTIKTDNDTILYVFFDSPYSKSALCTYSMNTIKQSFSTSKLEGYTKQLPSPAPGICLPAGKVVSHTTFEVIEKYNVLDDIIKPLSNQPIFEGPSGVKWFDIKEKENEHREYRIYFIKENSIYSFDTKSKQTRSSQV-DARLFSVMVTSKPLFIADIGIGVGMPQ-------
3nvxB00/1-383              ---SIEWHKFETSEEIISTYLLDDVLYTGVN-GAVYTFSNNKLNKTGLT--NNNYITTSIKVEDADKDT-LVCGTNNGNPKCWKIDGSDDPKHRGRGYAPYQNSKVTIISYNECVLSDINISKEGIKRWRRFDGPCGYDLYTADNVIPKDGLRGAFVDKDGTYDKVYILFTDTIGSK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSRTIKTDNDTILYVFFDSPYSKSALCTYSMNTIKQSFSTSKLEGYTKQLPSPAPGICLPAGKVVSHTTFEVIEKYNVLDDIIKPLSNQPIFEGPSGVKWFDIKEKENEHREYRIYFIKENSIYSFDTKSKQTRSSQV-DARLFSVMVTSKPLFIADIGIGVGMPQ-------
Q8JL80/12-399              -TNCIEWHKFETSEEIISTYLIDDVLYTGVN-GAVYTFSNNELNKTGLT-NNNNYITTSIKVE----DT-LVCGTNNGNPKCWKIDGSEDPKYRGRGYAPYQNSKVTIISHNECVLSDINISKEGIKRWRRFDGPCGYDLYTADNVIPKDGVRGAFVDKDGTYDKVYILFTDTIDTK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSKAIKTDNDTILYVFFDSPYSKSALCTYSMNAIKHSFSTSKLGGYTKQLPSPAPGICLPAGKVVPHTTFDIIEQYNELDDIIKPLS-QPIFEGPSGVKWFDIKEKENEHREYRIYFIKENTIYSFDTKSKQTRSAQV-DARLFSVMVTSKPLFIADIGIGVGIPRMKKILKM
I0AZL9/12-399              -TNCIEWHKFETSEEIISTYLIDDVLYTGVN-GAVYTFSNNELNKTGLT-NNNNYITTSIKVE----DT-LVCGTNNGNPKCWKIDGSEDPKYRGRGYAPYQNSKVTIISHNECVLSDINISKEGIKRWRRFDGPCGYDLYTADNVIPKDGVRGAFVDKDGTYDKVYILFTDTIDTK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSKAIKTDNDTILYVFFDSPYSKSALCTYSMNAIKHSFSTSKLGGYTKQLPSPAPGICLPAGKVVPHTTFDIIEQYNELDDIIKPLS-QPIFEGPSGVKWFDIKEKENEHREYRIYFIKENTIYSFDTKSKQTRSAQV-DARLFSVMVTSKPLFIADIGIGVGIPRMKKILKM
A0A075INQ3/12-399          -TNCIEWHKFETSEEIISTYLIDDVLYTGVN-GAVYTFSNNELNKTGLT-NNNNYITTSIKVE----DT-LVCGTNNGNPKCWKIDGSEDPKYRGRGYAPYQNSKVTIISHNECVLSDINISKEGIKRWRRFDGPCGYDLYTADNVIPKDGVRGAFVDKDGTYDKVYILFTDTIDTK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSKAIKTDNDTILYVFFDSPYSKSALCTYSMNAIKHSFSTSKLGGYTKQLPSPAPGICLPAGKVVPHTTFDIIEQYNELDDIIKPLS-QPIFEGPSGVKWFDIKEKENEHREYRIYFIKENTIYSFDTKSKQTRSAQV-DARLFSVMVTSKPLFIADIGIGVGIPRMKKILKM
A0A0G3FXU6/14-390          -VNGIEWHKFQTSEEIVSAYSIDGVLYIGVN-GAIYTFSNNELNKTIFI-NNNNYITTIINVD----KTLLACGTNNGNPKCWKIDGTDDPKHRGRGYAPYQKSKGMIISHNNCVLSDINIAKEGIKRWRRFDGSCGYDLYTSDNSIPDDGVKGAFVDKDDAYEKVYIVFTDTIKTK-RTVQIPYLAQMCLRDNGGPSSLSSHRWSTFLKAELECDIDGRSYRQVVQSKPILTDNDTILYVLFDSPYSTSALCSYSMNSIRHIFAESKLDGYTKPLPSPAPGKCLASDKTVPYGTFDVIETYNTLETIIKPLSNKPIFEGPSKVKGFDIKDN-------IIYFIKEKRAYSFNLQTKQLKMIKVAATKLFSVLVTSKPLFIADIGIGIGDS-------L
P21062/12-403              -ANGIEWHKFETSEEIISTYLLDDVLYTGVN-GAVYTFSNNKLNKTGLT--NNNYITTSIKVEDADKDT-LVCGTNNGNPKCWKIDGSDDPKHRGRGYAPYQNSKVTIISYNECVLSDINISKEGIKRWRRFDGPCGYDLYTADNVIPKDGLRGAFVDKDGTYDKVYILFTDTIGSK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSRTIKTDNDTILYVFFDSPYSKSALCTYSMNTIKQSFSTSKLEGYTKQLPSPAPGICLPAGKVVSHTTFEVIEKYNVLDDIIKPLSNQPIFEGPSGVKWFDIKEKENEHREYRIYFIKENSIYSFDTKSKQTRSSQV-DARLFSVMVTSKPLFIADIGIGVGMPQMKKILKM
A0A1C9KBV9/12-388          -ADGIEWHKFKTSEEIVSTYLLDDIVYIGVN-GAVYTFSNNELKKIDFSKNNNNYITTVINVE----ET-LACGTNNGSPKCWKIDGSDDPKHRGRGYAPYQKSKGTIISYNKCVLSDIDISKDGTKRWRRFDGQCGYDLYTSDNSIPKDGVIGAFVDNNDTYEKVYIVFTDNITTKRRTVQSPYVAQMCLKDNGGPSSMSSHRWSTFLKAELECDINGRSYRQIVQSKTVRTDNDTILYVLFDSPYSTSALCSYSMNSIRRMFAESNLDGYTKPLPSPRPGKCLLPDQIVPYSTFDVIEKYDTIDTIIKPLSNQPIFEGPSRVKGFDIKDN-------IVYFIKEKRAYSFNLDTKQLKSIKV-TAKLFSLLATSKPLLIADIGIGIGNS-------L
Q0GNS1/12-325              -ANGIEWHKFETSEKIISTYLIDDVLYTGVNGGAVYTFSNNKLNKTGLA--NTNYITTSIKVE--NEDT-LVCGTNNGNPKCWKIDGSDDPKHRGRGYAPY--SKVTIISYNECVLSDINISKEGIKRWRRFDGPCGYDLFTADNVIPKDGLRGAFVDKDGTYDKVYILFTDTIGSK-RIVKIPYITQMCLNDKGGPSSLSSHRWSTFFKVELECDIDGRSYRQIIHSKTIKTDNDTILYVFFDSPYSKSALCTYSMNTIKQSFSTSKLEGYTKQLPSPAPGICLPAGKVVSHTTFDVIEQYNVLDDIIKPLS-KPTY--------------------------LRRTVW-------------------------------------------------
P24764/50-291              -ANGIEWHKFETSEEIISTYLLDDVLYTGVN-GAVYTFSNNKLNKTGLA--NTNYITTSIKVEDADKDT-LVCGTNNGNPKCWKIDGSDDPKHRGRGYAPYQNSKVTIISHNGCVLSDINISKEGIKRWRRFDGPCGYDLYTADNVIPKDGLRGAFVDKDGTYDKVYILFTDTIGSK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSRTIKTDNDTILYVFFDSPHY-------------------------------------------------------------------------------------------------------------------------------------------------------
A0A1C9KCJ0/12-386          -TNGIEWHKFETPKEIVSTYLLDDIIYIGVN-GALYTFSNNEFKKTNF--NNNNYITTVIKID----ET-LVCGTNNGNPKCWKIDGSDDPKHRGRGYAPYQKSKGTIISHNKCVLSDINISKEGIRRWRRFDGPCGYDLYTADNSIPKDGIAGTFVDKDDIYEKVYIVFTDTITTKRRSVQSPYIAQMCLNDNGGPSSLSSHRWSTLLKAELECDINGRSYRQIVQSKTVRTDNDTILYVLFDSPYSTSGLCSYSMNSIRHMFAESNLDGYTKPLPSPRPGKCLPPDEIVTYSTFDVIEKYDTIETIIKPLSNKPIFEGPSRVKSFDIKDN-------IIYFIKEKHAYSFNLNTKQFKSIKVESAKLFSVLVTSKPLFIADIGIGIVKS--------
#=GC scorecons             045599999979777979897697779699909979999996879756402969999959787001169097999999799999999779997999999996499579997959999998979897899999996999998979969979965989997867979999699979469096966997799996959999989999999879699999979999998779767699999999969999763656646666364436436463666646666466366444446343665466364245366666614655444424424444321111111234444432344432224423323402334443334444434444444331210000001
#=GC scorecons_70          ____***************************_*********_****_*___*******_****____**_********************************_**_******_********************************_*****__*********************__*_*_*************_***********************************_******************_______________________________________________________________________________________________________________________________________________________
#=GC scorecons_80          ____******_**********_*****_***_*********_*_**_____*_*****_*_**_____*_*_*****************************__**_****_*_*********************_*******_**_*****__*******__******_*****__*_*_*__********_*_****************_***************_*__*_*********_*****________________________________________________________________________________________________________________________________________________________
#=GC scorecons_90          ____******_*___*_*_*__*___*_***_**_******_*_*______*_*****_*_*______*_*_******_********__***_********__**__***_*_******_*_***_********_*******_**_**_**__*****____*_****_***_*__*_*_*__**__****_*_**************_*_******_*******__*____*********_****_________________________________________________________________________________________________________________________________________________________
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