# STOCKHOLM 1.0
#=GF ID 1.25.40.180/FF/2167
#=GF DE Nonsense-mediated mRNA decay protein 2
#=GF AC 1.25.40.180/FF/2167
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 12.423
#=GS P38798/376-573      AC P38798
#=GS P38798/376-573      OS Saccharomyces cerevisiae S288C
#=GS P38798/376-573      DE Nonsense-mediated mRNA decay protein 2
#=GS P38798/376-573      DR GENE3D; 2ca9817bdb530b18f86641c6ca77de88/376-573; 
#=GS P38798/376-573      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P38798/376-573      DR GO; GO:0000184; GO:0005737; GO:0005844; GO:0006310; GO:0070478; 
#=GS A6ZSY4/376-573      AC A6ZSY4
#=GS A6ZSY4/376-573      OS Saccharomyces cerevisiae YJM789
#=GS A6ZSY4/376-573      DE Protein involved in the nonsense-mediated mRNA decay (NMD) pathway
#=GS A6ZSY4/376-573      DR GENE3D; 11dc4182a9b820bc69fa365aa1ea4138/376-573; 
#=GS A6ZSY4/376-573      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1P4K0/378-575      AC N1P4K0
#=GS N1P4K0/378-575      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P4K0/378-575      DE Nmd2p
#=GS N1P4K0/378-575      DR GENE3D; f845246cb9a474898fcadf5897d2f3f3/378-575; 
#=GS N1P4K0/378-575      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LSJ5/376-573      AC B3LSJ5
#=GS B3LSJ5/376-573      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LSJ5/376-573      DE Nonsense-mediated mRNA decay protein 2
#=GS B3LSJ5/376-573      DR GENE3D; 2e4f364c59b7b277cd520321e0449d2f/376-573; 
#=GS B3LSJ5/376-573      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WFF0/376-573      AC G2WFF0
#=GS G2WFF0/376-573      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WFF0/376-573      DE K7_Nmd2p
#=GS G2WFF0/376-573      DR GENE3D; f065d35147288d6d64c028d172df005b/376-573; 
#=GS G2WFF0/376-573      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8Z9M0/327-577      AC C8Z9M0
#=GS C8Z9M0/327-577      OS Saccharomyces cerevisiae EC1118
#=GS C8Z9M0/327-577      DE Nmd2p
#=GS C8Z9M0/327-577      DR GENE3D; 8d2ffb682279ffb81828c112be516b5d/327-577; 
#=GS C8Z9M0/327-577      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A0A0L8VP94/376-573  AC A0A0L8VP94
#=GS A0A0L8VP94/376-573  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VP94/376-573  DE NMD2p Protein involved in the nonsense-mediated mRNA decay (NMD) pathway
#=GS A0A0L8VP94/376-573  DR GENE3D; 2d8a89091d47762faaefbde1f39970fd/376-573; 
#=GS A0A0L8VP94/376-573  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS H0GHC9/6-253        AC H0GHC9
#=GS H0GHC9/6-253        OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GHC9/6-253        DE Nmd2p
#=GS H0GHC9/6-253        DR GENE3D; fdf485658ae2e01f97ff69becd520caf/6-253; 
#=GS H0GHC9/6-253        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GF TC 456.5 4.7E-141
#=GF SQ 8
P38798/376-573              -------------------------------------------------INLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKSALENIITLLYPPSVKSLNVTVKTI----
A6ZSY4/376-573              -------------------------------------------------INLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMNMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTI----
N1P4K0/378-575              -------------------------------------------------INLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKSALENIITLLYPPSVKSLNVTVKTI----
B3LSJ5/376-573              -------------------------------------------------INLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMNMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTI----
G2WFF0/376-573              -------------------------------------------------INLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMNMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTI----
C8Z9M0/327-577              TNQILPPNQRLWENEDTRKFYEILPDISKTVEESQSSKTEKDSNVNSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKSTRNRILKFFMETQDWSKLPVYSRFIAINSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTITPEQ
A0A0L8VP94/376-573          -------------------------------------------------INLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMNMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTI----
H0GHC9/6-253                ---ILPPNQRLWENEDTRKFYEILPDISKTVEESQSSKTEKDSNVNSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMXTQDWSKLPVYSRFIAINSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTITPEQ
#=GC scorecons              00011111111111111111111111111111111111111111111119999999999999999999999999999999969999999999599999999999999959999999999999999999999999999999999999999999999999999999999995999999999999999999999999999999999999999999999999999979999999999999999999999991111
#=GC scorecons_70           _________________________________________________*******************************************_***************_************************************************************_*****************************************************************************____
#=GC scorecons_80           _________________________________________________********************************_**********_***************_************************************************************_****************************************************_************************____
#=GC scorecons_90           _________________________________________________********************************_**********_***************_************************************************************_****************************************************_************************____
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