# STOCKHOLM 1.0
#=GF ID 1.25.40.10/FF/39659
#=GF DE RNA polymerase-associated protein CTR9
#=GF AC 1.25.40.10/FF/39659
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 9.957
#=GS H0H0M9/31-260      AC H0H0M9
#=GS H0H0M9/31-260      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0H0M9/31-260      DE Ctr9p
#=GS H0H0M9/31-260      DR GENE3D; 5d53c56da16239aea662e14b8738d81a/31-260; 
#=GS H0H0M9/31-260      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS E7QK97/41-275      AC E7QK97
#=GS E7QK97/41-275      OS Saccharomyces cerevisiae VL3
#=GS E7QK97/41-275      DE Ctr9p
#=GS E7QK97/41-275      DR GENE3D; 90e94be904a0b18df6ae0eed00ffa042/41-275; 
#=GS E7QK97/41-275      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS E7NMJ4/41-268      AC E7NMJ4
#=GS E7NMJ4/41-268      OS Saccharomyces cerevisiae FostersO
#=GS E7NMJ4/41-268      DE Ctr9p
#=GS E7NMJ4/41-268      DR GENE3D; ad7043f5d9c3fc7805baad8a14b2ac24/41-268; 
#=GS E7NMJ4/41-268      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B5VRB7/41-271      AC B5VRB7
#=GS B5VRB7/41-271      OS Saccharomyces cerevisiae AWRI1631
#=GS B5VRB7/41-271      DE YOL145Cp-like protein
#=GS B5VRB7/41-271      DR GENE3D; a45e3bb824fa3229cdcecdb98ab1b24c/41-271; 
#=GS B5VRB7/41-271      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZN67/41-271      AC A6ZN67
#=GS A6ZN67/41-271      OS Saccharomyces cerevisiae YJM789
#=GS A6ZN67/41-271      DE Cln three (Cln3) requiring protein
#=GS A6ZN67/41-271      DR GENE3D; a45e3bb824fa3229cdcecdb98ab1b24c/41-271; 
#=GS A6ZN67/41-271      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GV20/41-271      AC C7GV20
#=GS C7GV20/41-271      OS Saccharomyces cerevisiae JAY291
#=GS C7GV20/41-271      DE Ctr9p
#=GS C7GV20/41-271      DR GENE3D; a45e3bb824fa3229cdcecdb98ab1b24c/41-271; 
#=GS C7GV20/41-271      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LIS2/41-271      AC B3LIS2
#=GS B3LIS2/41-271      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LIS2/41-271      DE CTR9 protein
#=GS B3LIS2/41-271      DR GENE3D; a45e3bb824fa3229cdcecdb98ab1b24c/41-271; 
#=GS B3LIS2/41-271      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1NWU3/43-271      AC N1NWU3
#=GS N1NWU3/43-271      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1NWU3/43-271      DE Ctr9p
#=GS N1NWU3/43-271      DR GENE3D; 5948353feabb0f9618bacc8d7020b56d/43-271; 
#=GS N1NWU3/43-271      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WM93/42-269      AC G2WM93
#=GS G2WM93/42-269      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WM93/42-269      DE K7_Ctr9p
#=GS G2WM93/42-269      DR GENE3D; e8f66130f506dc6db990da327d3dd2ca/42-269; 
#=GS G2WM93/42-269      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS H0GMZ3/41-272      AC H0GMZ3
#=GS H0GMZ3/41-272      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GMZ3/41-272      DE Ctr9p
#=GS H0GMZ3/41-272      DR GENE3D; a6c6f9598a8a61e61d7f4a61fdb424ac/41-272; 
#=GS H0GMZ3/41-272      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS C8ZHH2/41-270      AC C8ZHH2
#=GS C8ZHH2/41-270      OS Saccharomyces cerevisiae EC1118
#=GS C8ZHH2/41-270      DE Ctr9p
#=GS C8ZHH2/41-270      DR GENE3D; 991d43fb2ab8b9ffdf0fda2f0629d1a8/41-270; 
#=GS C8ZHH2/41-270      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A0A0L8VI83/41-270  AC A0A0L8VI83
#=GS A0A0L8VI83/41-270  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VI83/41-270  DE CTR9p Component of the Paf1p complex involved in transcription elongation
#=GS A0A0L8VI83/41-270  DR GENE3D; 991d43fb2ab8b9ffdf0fda2f0629d1a8/41-270; 
#=GS A0A0L8VI83/41-270  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS E7KTV3/41-270      AC E7KTV3
#=GS E7KTV3/41-270      OS Saccharomyces cerevisiae Lalvin QA23
#=GS E7KTV3/41-270      DE Ctr9p
#=GS E7KTV3/41-270      DR GENE3D; 991d43fb2ab8b9ffdf0fda2f0629d1a8/41-270; 
#=GS E7KTV3/41-270      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF TC 524.3 1.4E-161
#=GF SQ 13
H0H0M9/31-260              --TDLKTLLVEESSEKEHWLTIALAYCNHGKTNEGIKLIEMALNVFQNSERASLHTFLTWAHLNLAKGHSLSMETKEQELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDPKMAIRSWQRALQINSKNTSASILVLLGEFHDSLIDSSN---
E7QK97/41-275              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNSTNDKT
E7NMJ4/41-268              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFT-------
B5VRB7/41-271              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNST----
A6ZN67/41-271              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNST----
C7GV20/41-271              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNST----
B3LIS2/41-271              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNST----
N1NWU3/43-271              --TDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNST----
G2WM93/42-269              -PTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDFFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTN------
H0GMZ3/41-272              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNSTN---
C8ZHH2/41-270              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNS-----
A0A0L8VI83/41-270          DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNS-----
E7KTV3/41-270              DPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIEMALDVFQNSERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAELNLKDAIGFDPTWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRAKLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTSASILVLLGEFRESFTNS-----
#=GC scorecons             3499999999996999999999999999999999999999999779999999999999999999999979997999979999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999699997999999979699999999999999779765520000
#=GC scorecons_70          __**********************************************************************************************************************************************************************************************************************************_______
#=GC scorecons_80          __**********_******************************_****************************_************************************************************************************************************************_************_*_**************_**_________
#=GC scorecons_90          __**********_******************************__***********************_***_****_*******************************************************************************************************************_****_*******_*_**************__*_________
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