# STOCKHOLM 1.0 #=GF ID 1.25.10.10/FF/69963 #=GF DE U-box domain-containing protein 28 #=GF AC 1.25.10.10/FF/69963 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 67.283 #=GS Q9LSA6/112-406 AC Q9LSA6 #=GS Q9LSA6/112-406 OS Arabidopsis thaliana #=GS Q9LSA6/112-406 DE U-box domain-containing protein 29 #=GS Q9LSA6/112-406 DR GENE3D; bfce8a20ecf53d15d899e24f58c25727/112-406; #=GS Q9LSA6/112-406 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9LSA6/112-406 DR GO; GO:0004842; GO:0009506; GO:0010200; GO:0016567; GO:0070696; #=GS Q9LSA6/112-406 DR EC; 2.3.2.27; #=GS Q9LXE3/108-400 AC Q9LXE3 #=GS Q9LXE3/108-400 OS Arabidopsis thaliana #=GS Q9LXE3/108-400 DE U-box domain-containing protein 28 #=GS Q9LXE3/108-400 DR GENE3D; cd8f67b96eaf931e923417eb83e43749/108-400; #=GS Q9LXE3/108-400 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9LXE3/108-400 DR GO; GO:0005515; GO:0010200; #=GS Q9LXE3/108-400 DR EC; 2.3.2.27; #=GS Q9FLF4/97-410 AC Q9FLF4 #=GS Q9FLF4/97-410 OS Arabidopsis thaliana #=GS Q9FLF4/97-410 DE U-box domain-containing protein 27 #=GS Q9FLF4/97-410 DR GENE3D; 38124c1d02357cb1723d9baf0426ddfb/97-410; #=GS Q9FLF4/97-410 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9FLF4/97-410 DR GO; GO:0010200; #=GS Q9FLF4/97-410 DR EC; 2.3.2.27; #=GS A0A178UAA5/97-410 AC A0A178UAA5 #=GS A0A178UAA5/97-410 OS Arabidopsis thaliana #=GS A0A178UAA5/97-410 DE RING-type E3 ubiquitin transferase #=GS A0A178UAA5/97-410 DR GENE3D; 38b702624266781855ec924a7e05d23f/97-410; #=GS A0A178UAA5/97-410 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A178UAA5/97-410 DR EC; 2.3.2.27; #=GS A0A178UA46/108-400 AC A0A178UA46 #=GS A0A178UA46/108-400 OS Arabidopsis thaliana #=GS A0A178UA46/108-400 DE RING-type E3 ubiquitin transferase #=GS A0A178UA46/108-400 DR GENE3D; cd8f67b96eaf931e923417eb83e43749/108-400; #=GS A0A178UA46/108-400 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A178UA46/108-400 DR EC; 2.3.2.27; #=GS A0A178VJJ8/112-406 AC A0A178VJJ8 #=GS A0A178VJJ8/112-406 OS Arabidopsis thaliana #=GS A0A178VJJ8/112-406 DE RING-type E3 ubiquitin transferase #=GS A0A178VJJ8/112-406 DR GENE3D; bfce8a20ecf53d15d899e24f58c25727/112-406; #=GS A0A178VJJ8/112-406 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A178VJJ8/112-406 DR EC; 2.3.2.27; #=GS A0A1J3IC44/99-404 AC A0A1J3IC44 #=GS A0A1J3IC44/99-404 OS Noccaea caerulescens #=GS A0A1J3IC44/99-404 DE RING-type E3 ubiquitin transferase #=GS A0A1J3IC44/99-404 DR GENE3D; 273bf2fa4ee85b341edb6c552e00d1d3/99-404; #=GS A0A1J3IC44/99-404 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; #=GS A0A1J3IC44/99-404 DR EC; 2.3.2.27; #=GS A0A078F750/98-408 AC A0A078F750 #=GS A0A078F750/98-408 OS Brassica napus #=GS A0A078F750/98-408 DE RING-type E3 ubiquitin transferase #=GS A0A078F750/98-408 DR GENE3D; 2e6bcc3d2991c3d3f24467ddf0533336/98-408; #=GS A0A078F750/98-408 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS A0A078F750/98-408 DR EC; 2.3.2.27; #=GS M4E6B4/97-409 AC M4E6B4 #=GS M4E6B4/97-409 OS Brassica rapa subsp. pekinensis #=GS M4E6B4/97-409 DE RING-type E3 ubiquitin transferase #=GS M4E6B4/97-409 DR GENE3D; 57571df49f4a3a9137751eeb1ae2b0e6/97-409; #=GS M4E6B4/97-409 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS M4E6B4/97-409 DR EC; 2.3.2.27; #=GS D7M274/89-404 AC D7M274 #=GS D7M274/89-404 OS Arabidopsis lyrata subsp. lyrata #=GS D7M274/89-404 DE RING-type E3 ubiquitin transferase #=GS D7M274/89-404 DR GENE3D; 6c28babdcf9bf7a2404b933750b825ee/89-404; #=GS D7M274/89-404 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS D7M274/89-404 DR EC; 2.3.2.27; #=GS A0A1J3EH42/92-404 AC A0A1J3EH42 #=GS A0A1J3EH42/92-404 OS Noccaea caerulescens #=GS A0A1J3EH42/92-404 DE RING-type E3 ubiquitin transferase #=GS A0A1J3EH42/92-404 DR GENE3D; 8361beac0af56f7a150cf922cc778db5/92-404; #=GS A0A1J3EH42/92-404 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; #=GS A0A1J3EH42/92-404 DR EC; 2.3.2.27; #=GS A0A1J3DPT3/99-404 AC A0A1J3DPT3 #=GS A0A1J3DPT3/99-404 OS Noccaea caerulescens #=GS A0A1J3DPT3/99-404 DE RING-type E3 ubiquitin transferase #=GS A0A1J3DPT3/99-404 DR GENE3D; 92bc8b10e062eee2311112f67c7ebebe/99-404; #=GS A0A1J3DPT3/99-404 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; #=GS A0A1J3DPT3/99-404 DR EC; 2.3.2.27; #=GS R0GU05/82-409 AC R0GU05 #=GS R0GU05/82-409 OS Capsella rubella #=GS R0GU05/82-409 DE RING-type E3 ubiquitin transferase #=GS R0GU05/82-409 DR GENE3D; e66802faa8bbc93f2ca687e443981c1a/82-409; #=GS R0GU05/82-409 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS R0GU05/82-409 DR EC; 2.3.2.27; #=GS V4KJL6/97-318 AC V4KJL6 #=GS V4KJL6/97-318 OS Eutrema salsugineum #=GS V4KJL6/97-318 DE RING-type E3 ubiquitin transferase #=GS V4KJL6/97-318 DR GENE3D; 3a9fb1501b24e7997a0249032ccfbdb9/97-318; #=GS V4KJL6/97-318 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; #=GS V4KJL6/97-318 DR EC; 2.3.2.27; #=GF TC 410.6 1.8E-126 #=GF SQ 14 Q9LSA6/112-406 -----------------------------ERLMSLENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDII------RTKKTKIELVIMAIRILDSIK---VDRERLSNLMLANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLT-NVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFNS-SALAAYE Q9LXE3/108-400 -------------------------RIEN------DARSKILRFARESDENREFLAGKDDFVAMLVDLI--SDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLSNLILTN-GGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLIS--SDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTT--SVSVTEKCLKLLEAISSCKEGRSEIC--D-GVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQ-DAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRSCLSVYE Q9FLF4/97-410 ---------------DEIADAIDRVKIEKEERDDREVLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIRSKVSDRRRFSNLILTN-GRDRLSVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIAERDGLITELMKSIS--KDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDSTSSLSVSVTEKCLKLLEILASTKEGRSEICGGD-GECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKAL-EAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAY- A0A178UAA5/97-410 ---------------DEIADAIDRVKIEKEERDDREVLSKIVRFGRESDDNRGFLAGKDDFVILLVDLINQVDFETTSAAKSLVVQEAVKILSTIRSKVSDRRRFSNLILTN-GRDRLSVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIAERDGLITELMKSIS--KDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDSTSSLSVSVTEKCLKLLEILASTKEGRSEICGGD-GECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKAL-EAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAY- A0A178UA46/108-400 -------------------------RIEN------DARSKILRFARESDENREFLAGKDDFVAMLVDLI--SDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLSNLILTN-GGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLIS--SDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTT--SVSVTEKCLKLLEAISSCKEGRSEIC--D-GVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQ-DAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRSCLSVYE A0A178VJJ8/112-406 -----------------------------ERLMSLENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDII------RTKKTKIELVIMAIRILDSIK---VDRERLSNLMLANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLT-NVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFNS-SALAAYE A0A1J3IC44/99-404 -----------------IA-----AAIEKEERYDREILSKILRFARESDDNKGFLAGKDDFVRLLADLLSQVDFKTTSTAKLLVVQEAVKILSMIRIKISDRRRFSNLILNN-GRDRLTAIIFLFKTGNVELKIECAGLLEFMAVDAESKLLIAERDGLISELMKSIS--RDSDPSLIESTLSVLIAISSQKRVKLNLIREKLIKDLTKLLSDPTTS-SVSVTEKCLKLLETLASTKEGRSEICGGD-GECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKAL-EAVTSTNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAY- A0A078F750/98-408 ----------------EIADAIDRVKVEKEERFDREVLAKILRFARESDDNRGFLAGKDDFVRLLVDLMSQVDFKTTSAAKLLIVQEAVKILSMIRSKISDRRRFSNLVLNN-GRDRLSTIVYFFKTGNVELKIDCAGLLEFIAVDSESKVSIAERDGLVVELMKSIS--RDSDSSLIEATLSCLIAISSPRRVKLNLIREKLIKDLTKLLTDPTTS-SVSVTEKSLKLLESLASTKEGRSEICGGD-GECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEEKAL-EAVTSTNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSA-- M4E6B4/97-409 ---------------DEIADAIDRVKVEKEERFDREVLAKILRFARESDDNRGFLAGKDDFVRLLVDLMSQVDFKTTSAAKLLIVQEAVKILSMIRSKISDRRRFSNLVLNN-GRDRLSTIVYFFKTGNVELKIDCAGLLEFIAVDSESKVLIAERDGLVVELMKSIS--RDSDSSLIEATLSCLIAISSPRRVKLNLIREKLIKDLTKLLTDPTTS-SVSVTEKSLKLLESLASTKEGRSEICGGD-GECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEEKAL-EAVTSTNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAY- D7M274/89-404 ------SPESNTPSRDEINAAIEKIRIEN---DNCDVLSKILRFAKESDENREFLAGKDDFVGMLVDLIIQFDSRHFSGSQLILVGEAVKILSMICRKIFDRRRLSNLILTN-GGDCLTSFFLLIKSGNPKLKIDCSAVLEFIAVDAESKLIIAERDGLVIEIMKSIS--SDSDSSLIEASLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTT--SVSVTEKCLKLLEAFSSCKEGRSEIC--D-GACVETVVKKLMKVSTAATEHAVTVLWSVCYLFKEKKAQ-DAVIKTNGVTKILLLLQSNCSLTVRHMLTDLLKVLKVNSRSCL-YTE A0A1J3EH42/92-404 ----------SVPTRDEIA-----AAIEKEERYDREILSKILRFARESDDNKGFLAGKDDFVRLLADLLSQVDFKTTSTAKLLVVQEAVKILSMIRIKISDRRRFSNLILNN-GRDRLTAIIFLFKTGNVELKIECAGLLEFMAVDAESKLLIAERDGLISELMKSIS--RDSDPSLIESTLSVLIAISSQKRVKLNLIREKLVKDLTKLLSDPTTS-SVSVTEKCLKLLETLASTKEGRSEICGGD-GECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKAL-EAVTSTNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAY- A0A1J3DPT3/99-404 -----------------IA-----AAIEKEERYDREILSKILRFARESDDNKEFLAGKDDFVRLLADLLSQVDFKTTSTAKLLVVQEAVKILSMIRIKISDRRRFSNLILNN-GRDRLTAIIFLFKTGNVELKIECAGLLEFMAADAESKLLIAERDGLISELMKSIS--RDSDPSLIESTLSVLIAISSQKRVKLNLIREKLITDLTKLLSDPTTS-SVSVTEKCLKLLETLASTKEGRSEICGGD-GECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKAL-EAVTSTNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAY- R0GU05/82-409 RRASVESAELAAPTRDEIADAIDRVKIEKEERDDREVLSKIVRFGRESDDNRGFLAGKDDFVRLLVDLIDKVDFETTSAAKSLVVQEAVKILSLVRTKISDRRRFSNLILNN-GRDRLAVIVFLFRTGNVELKIDCAGLLEFIAVDAESKLLIAERDGLVTELMKSIS--KDSDSSLIESSLSCLIAISSPKRVKLNLIREKLIGDVTKLLSDPTAS-SVSVTEKCLKLLEILASTKEGRSEICGGD-GECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKAL-EAVTSANGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAY- V4KJL6/97-318 ---------------DEISDAIDRVKIEKEERYDREILSKILRFARESDDNRGFLAGKDDFVRLLVDLMGQVDFKTTSTPKLLVVQEAVKILSMIRTKISDRRRFSNLILNN-GRDRLTAIVFLFKTGNVELKVDCAGLLEFIAVDAESKLLIAERDGLVTELMKSIS--RESDPSLIESSLSCLVAISSPKRVKLNLLREKLIKDLTKLLTDPT---SVSVTEKCLKLLEILASTKEGRSEI-------------------------------------------------------------------------------------------- #=GC scorecons 00000000000000012321111123454533243746599699577995976997696799469797613353346635755694697799658625449969699969590959596565555659956698775569767769779985997789765967979900469959999659949879665899765976696745665794659320797999969999947694799969963260636445665665666656666666566554656564653055633366666565556666633664644665665656636464451 #=GC scorecons_70 ___________________________________*_*_*****_****_**_*****_***_******________*__*___*__******_**____**********_*_*_*_**_*____*_**_******__*************_*******__*_*****____**_****__**_******_*****_*******___*_**_*_*___*************_*_*_********__*_*_*___**_**_****_*******_**___*_*_*_*_____*___*****_*___*****__**_*__**_**_*_**_*_*____ #=GC scorecons_80 ___________________________________*___**_**_****_**_**__*_***__****________________*__*****__*_____**_*_***_*_*_*_*_*_________**___**_____**_*__**_***_*******__*_**_**____**_****__**_****___****__*___*_*_____**___*____*_****_*****___*_****_**____________________________________________________________________________________________ #=GC scorecons_90 _______________________________________**_**___**_*__**__*__**__*_*_________________*__*__**__*_____**_*_***_*_*_*_*_*_________**___**_____*_____*__**__**___*___*__*_**____**_****__**_**_*___***___*___*________*___*____*_****_*****___*__***_**____________________________________________________________________________________________ //